Chapter 1 - The Chemical Basis of Life Flashcards
biochemistry
a study of the chemical processes and chemical transformations in living organisms
what distinguishes life from death?
life - able to maintain a state that is different from the environment
death - in equilibrium with the environment
what are the most abundant elements found in biological systems?
carbon, nitrogen, oxygen, hydrogen
what are the 4 major types of biomolecules that cells contain?
amino acids, carbohydrates, nucleotides, lipids
what are the 3 major kinds of biological polymers?
proteins, Nucleic Acids, polysaccharides
major and minor functions of proteins
major functions: carry out metabolic reactions, support cellular structures
minor function: store energy
major and minor functions of nucleic acids
major functions: encode information
minor functions: carry out metabolic reactions, support cellular structures
major and minor functions of polysaccharides
major functions: store energy, support cellular structures
minor functions: encode information
first law of thermodynamics
energy is conserved
energy change of a system
heat (q) absorbed by the system from the surroundings - work (w) done by the system on the surroundings
change in enthalpy
- the heat content of the system
- change in energy (U) + pressure*change in volume
second law of thermodynamics
entropy tends to increase
entropy
- a measure of the system’s disorder or randomness
- S=kB*W, where kB is the Boltzmann constant, W is the number of energetically equivalent ways
Gibbs free energy
- a measure of the free energy of a system based on enthalpy and entropy
- change in Gibbs free energy (G)= change in enthalpy (H)-temperature*change in entropy (S)
- change in G < 0 is a spontaneous, exergonic reaction
- change in G > 0 is a non-spontaneous, endergonic reaction
how do organisms acquire and use energy?
cells couple unfavourable metabolic processes with favourable ones so that the net change in free energy is negative
reduction
- gain of electrons
- addition of hydrogen
- removal of oxygen
oxidation
- loss of electrons
- removal of hydrogen
- addition of oxygen
reduction and deoxidation of carbon compounds
using light energy, reduction of carbon dioxide occurs, creating monosacchardies. this process is unfavourable. then oxidation occurs, converting the monosaccharide back to carbon dioxide. this process released free energy into the surroundings and is favourable
amino acids
contain amino group (-NH2) and carboxylic acid group (-COOH). under physiological conditions, they are present as NH3+ and COO-
nucleotides
- contains 5-carbon sugar, nitrogen-containing ring, and 1 or more phosphate groups
- nitrogenous ring compounds/bases: adenine (A), cytosine (C), guanine (G), thymine (T), uracil (U)
proteins
- polymer of amino acids
- peptide bonds link amino acids residues
- 20 different amino acids
- this biological polymer class is the most structurally variable and therefore the most functionally versatile
nucleic acids
- polymer of nucleotides
- phosphodiester bonds
- RNA: A, C, G, U
- DNA: A, C, G, T
- sequence is important rather than structure. it determines genetic information
order of oxidation states from least reduced to most reduced
carbon dioxide, acetic acid, carbon monoxide, formic acid, acetone, acetaldehyde, formaldehyde, acetylene, ethanol, ethene, ethane, methane