Chapter 1: Introduction (Book) Flashcards

1
Q

What is cancer (what is it characterised by)?

A

A group of diseases characterized by unregulated cell grwoth and the invasion and spread of cells from the site of origin to other sites in the body.

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2
Q

Cancer is characterised as a group of diseases. What does this mean?

A

That over 100 types of cancers have been classified that each have their own origin, cause, phenotype, molecular mechanism and treatment. (E.g. lung cancer caused by smoke inhalation compared to skin cancer caused by UV-radiation).

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3
Q

Hanahan and Weinberg defined six hallmarks of cancers. Besides this, they modified their concept to include two enabling characteristics and two emerging hallmarks. Name the six hallmarks, two enabling characteristics and two emerging hallmarks.

A
  • Six hallmarks: autonomous growth signals, evasion of growth inhibitory signals, evasion of apoptotic cell death, unlimited replicative potential, angiogenesis and invasion and metastasis.
  • Two enabling characteristics: genome instability and tumor-promoting inflammation.
  • Two emerging hallmarks: reprogramming energy metabolism and avoiding immune destruction.
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4
Q

Why are malignant tumors life-threatening and how can benign tumors be life-threatening?

A

Malignant tumors are life-threatening because they’re physical obstructions and compromise function of other organs upon invasion. They also compete fierely with healthy tissue for nutrients and oxygen. Benign tumors can be life-threatening because of their location (e.g. in the brain).

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5
Q

(I didn’t discuss this properly in the lecture part of chapter 1, so the following cards are a bit of a repetition). What is meant by contact inhibition?

A

Contact with neighboring cells inhibits growth. Normal cells grow as a single layer (monolayer) due to contact inhibition.

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6
Q

So what happens when normal cells transform to cancer cells (what phenotype do they acquire) in cell culture?

A
  • No contact inhibition -> cancer cells grow as piles of cells (foci) against a monolayer of normal cells.
  • They can grow in conditions of low serum.
  • They adopt round morphology (rather than flat and extended).
  • They are able to grow without attaching to a substrate (e.g. surface petri dish) -> anchorage independence.
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7
Q

Fill in: Most agents that cause cancer, called … (1), are agents that cause alterations to the DNA sequence, called mutations (e.g. … (2).

A
  1. carcinogens 2. mutagens
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8
Q

What are two factors that contribute to the increasing risk of cancer development during aging?

A

Mutations in cells accumulate over time and the world life expectancy has more than doubled.

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9
Q

Fill in: Interestingly, only … (1)% of the mutations observed are thought to be directly involved in causing cancer.

A

5-10%

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10
Q

True or false: Clonal evolution explains the heterogeneous population of cells within a tumor.

A

True

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11
Q

What process is explained by the fact that clonal evolution explains the heterogeneous population of cells within a tumor.

A

Darwinian evolution, the additional mutations give the cancer cells a growth advantage over its normal neighbors.

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12
Q

When can mutations accumulate in a cell?

A

When the cell’s defence mechanism (e.g. DNA repair) have been evaded.

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13
Q

What three important processes contribute to the overall net cell number in an individual?

A

Cell proliferation, apoptosis and differentiation (make sure you can understand how an increase/decrease/imbalance in these processes can result in more/less cells.

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14
Q

Why does a oncogene “act” dominant?

A

An oncogene is a gene mutated such that its protein product is produced in higher quantaties or has increased activity and therefore acts in a dominant manner to initiate further tumor formation.

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15
Q

Why are tumor suppressor mutations mainly recessive?

A

Because one intact allele is usually sufficient to inhibit growth and so one mutated allele is insufficient to stimulate growth.

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16
Q

What is Knudson’s two-hit hypothesis?

A

It states that both alleles need to be mutated (recessive) to trigger carcinogenesis.

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17
Q

Why do patients with one inherited mutated tumor suppressor allele have a “head start” towards a cancer phenotype?

A

Because these patients only need to acquire a second somatic mutation, the first mutation is already there.

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18
Q

What is haploinsufficiency?

A

Only one mutated tumor suppressor allele can lead to the cancer phenotype.

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19
Q

Why do normal stem cells seem to be a main starting point for carcinogenesis in some cancers?

A

Both cancer cells and stem cells utilize and rely on self-renewal molecular programs. Also, cancer is more likely to develop in cells that are actively proliferating, as there is a greater chance for mutations to accumulate.

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20
Q

What is correlative evidence?

A

The observation between two events and weakly intimates that one may cause the other. (For example, a gene from a tumor has a mutation, compared with the same gene isolated from healthy tissue –> keep in mind that this kind of evidence has a good starting point, but is not strong evidence (and may even be coincidental))

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21
Q

What is loss-of-function evidence?

A

Inhibiting the function of a gene, gene product or other factor of interest (with antibodies or knock-out mice). There needs to be an appropriate control, to ensure that only the target is affected.

22
Q

What is gain-of-function evidence?

A

Strongest type of evidence. Obtained when your factor of interest is moved to a new location and triggers a causative event at a time or place where it normally doesn’t occur.

23
Q

Name risk factors for cancer (don’t learn by heart)

A

UV-radiation, hormones (contraception and fertility treatments), age of a women at the time of giving birth for the first time, age begin and age end menstruation, sexual promiscuity, viruses, diet, exercise, alcohol, smoking.

24
Q

What is the cause for the decrease in breast cancer incidence?

A

Reduction in use of hormone replacement therapy

25
Q

Fill in: Stomach cancer is a predominant cancer in the … (1) population and a minor cancer in the population of the … (2). Interestingly, the risk of stomach cancer in … (3) people who have migrated to the … (4) decreases only if they adopt the … (5) diet, but not if they retain a … (6) diet.

A
  1. Japanese 2. USA 3. Japanese 4. USA 5. American 6. Japanese
26
Q

In addition to lifestyle factors, there are risk factors inherent in our own physiology. What are these?

A

By-products of our own metabolism (by-products of oxygen radicals are mutagenic) and errors that occur during DNA replication contribute to carcinogenesis.

27
Q

What is the main objective of cancer therapy?

A

To prevent proliferation (cytostatic effect) and to kill cancer cells (cytotoxic effect).

28
Q

Fill in: The aim with all drugs is to achieve an effective result with … (1) side effects. This is indicated by the … (2). This is the value of the difference between the minimum … (3) dose and the maximum … (4) dose. The … (5) the value, the safer the drug. Many conventional cancer treatments are adminstered at … (6).

A
  1. mimimum 2. therapeutic index 3. effective 4. tolerated 5. larger 6. maximum tolerated dose
29
Q

What is used during conventional chemotherapy and what is targeted?

A

Chemicals are used to target DNA, RNA and protein to disrupt the cell cycle in rapidly dividing cancer cells and thus has broad specificity.

30
Q

What is the ultimate goal of (cytotoxic) chemotherapy?

A

To cause severe DNA damage and to trigger apoptosis in rapidly dividing cancer cells.

31
Q

What are the side effects of chemotherapy (alopecia, ulcers and anemia) caused by?

A

Hair follicles, stomach epithelia and hematopoietic cells are also rapidly dividing and are therefore greatly affected by chemotherapy.

32
Q

Fill in: About …% of drugs tested in Phase I of a clinical trial will progress to Phase II studies. And about …% of drugs tested succesfullu complete Phase III trials.

A

70% and 30% respectively.

33
Q

Phase I trials examine dose responses for assessing drug safety, using a small number (20-80) of healthy volunteers. Phase II trials examine efficacy in a larger group of people (100-300). What is a must to know before proceeding to Phase II trials?

A

The effective drug dosage, this needs be known prior to initiation of a Phase III trial.

34
Q

In many countries, only a particular group can be recruited for clinical trials which has implications for the outcome. What group is this?

A

Terminally ill patients

35
Q

What is the goal of trial randomization?

A

Patients are randomly assigned to either a treatment group or control group, guaranteering that the two groups are similar.

36
Q

Why does targeted therapy not require the adminstration of the maximum tolerated dosage?

A

Because the design of trials for molecurlarly targeted drugs needs to be well though out. (It is important to consider the stage and type of cancer to be treated, patient populations with the correct molecular profiles, assessment of the compound in inhibiting its molecular target, and assessment of the relationship between molecular inhibition and clinical respons.)

37
Q

What is a major flaw in the rationale of most conventional therapies?

A

The lack of selectivity against tumor cells versus normal cells. (As a result, the side effects of most therapies are very harsh.)

38
Q

Just keep in mind, when examining molecular pathways that underlie carcinogenesis, that the pathways do not act in isolation but are interconnected.

A

Okay

39
Q

What are important proteins in cancer biology?

A

The family of protein kinases, the Ras family, tumor suppressor protein p53 (TP53) and the retinoblastoma gene (Rb).

40
Q

What is the function of kinases and why does this contribute in cancer biology?

A

Kinases phosphorylate a hydroxyl group on specific amino acids in proteins. Phosphorylation results in a conformational change, a mechanism known for regulating the activity of a protein. Kinases play a critical role in major cell functions, like cell cycle progression, signal transduction and transcription. And thus are important molecular targets for the design of cancer drugs.

41
Q

What kind of enzymes can act as tumor suppressors in some types of cancer?

A

Phosphatases (removes phosphate groups).

42
Q

Ras is mutated in over 50% of certain cancers. What is the function of Ras?

A

It is an intracellular transducer protein that can induce binding of a growth factor to its receptor. It is involved in transmitting the signal from the receptor through the cell.

43
Q

What is the function of tumor suppressor p53?

A

They acts as guardians over the integrity of the genome by coordinating responses of the cell (e.g. cell cycle arrest, DNA repair, apoptosis) to different types of stress. It then acts as a transcription factor that induces the expression of genes required to carry out its function.

44
Q

What is the normal function of the retinoblastoma protein (Rb)?

A

It is also a tumor suppressor that plays a central role in regulating the cell cycle. Normally, it is an inhibitor of cell proliferation by binding to, and suppressing, an essential transcription factor of cell cycle progression.

45
Q

What is the Human Genome project?

A

A project whereby every nucleotide of a human genome has been sequenced and mapped.

46
Q

How did the Human Genome Project contribute to research about cancer?

A

That the genomic profile of an individual’s tumor is unique and personal. This is leading us into the era of personalized medicine where a patient’s tumor genome will inform doctors of the best treatment for that individual.

47
Q

What information did the International Cancer Genome Consortium (ICGC) provide?

A

They performed large genomic studies across the globe to characterize at least 50 classes of cancer, including the sequencing of several hundreds of tumors for each type, and to make the data available to the entire research community.

48
Q

What is the kinome?

A

Mapping of the complete set of (518) protein kinases genes in the genome.

49
Q

What is the goal of the International SNP Map Working Group?

A

To identify mutations within the genome that may be linked with cancer.

50
Q

What is the goal of Genome-Wide Association Studies (GWAS)?

A

They investigate the entire genome for common genetic variants in different individuals to see if there are any associations betweens SNPs and a trait/disease such as cancer.

51
Q

For what are functional genomics important?

A

Functional genomics is a field of molecular biology that attempts to describe gene (and protein) functions and interactions (knock-out mice, siRNAs, CRISPR). And so to provide insights into cancer biology.