Chapter 1- Eukaryotic cell structure Flashcards
Cell
A unit of space enclosed by a membrane, which is the basis of all living organisms
Plasma membrane
The external cellular membrane, which is composed of amphipathic phospholipids and protein. It separates the relatively constant internal cellular environment from the potentially hostile external environment. The protein composition of the membrane varies between cell types, but the lipid composition is common to all cells. The two sides of the plasma membrane have a different lipid composition. Proteins and lipids are not randomly distributed throughout the membrane
Characteristics of a cell (8)
- Many cells contain the same inorganic ions and organic molecules- carbohydrates, lipids, proteins, and nucleic acids
- A plasma membrane
- Systems that link the internal and external environment
- The ability to transform external energy sources into utilizable energy that powers cellular reactions
- The ability to convert ingested nutrients into necessary components of the cell, and to eliminate waste products
- The ability to synthesize macromolecules
- A DNA genome
- The ability to replicate, transferring the cell’s genetic information to offspring
Prokaryotes
Cells with single stranded DNA lacking a defined nucleus and internal membrane structures. Includes common bacteria and archaea. Prokaryotes are usually unicellular but can form colonies or filaments
3 major domains
Archaea, eubacteria (common bacteria), and eukaryotes
All organisms are grouped into one of these 3 domains
Nucleoid region
Prokaryotes contain a single circular strand of DNA, which is confined to a separate mass in the cell called the nucleoid. The nucleoid is not surrounded by a membrane or envelope
Eukaryotes
Includes single celled organisms like yeasts and fungi, as well as multicellular plants and animals. Eukaryotes have a defined nucleus with a well defined membrane that contains most of the cell’s DNA. They also have extensive membrane systems and intracellular organelles surrounded by membranes
Compartmentalization in eukaryotic cells
The intracellular membrane systems in eukaryotes establishes cellular compartments, which allows for subcellular organization. Due to these compartments, different chemical reactions that require different environments can occur simultaneously
Chemical structure of water
In water, two hydrogen atoms share their electrons with an unshared pair of electrons of an oxygen atom. Water is polar because oxygen is more electronegative than hydrogen, and therefore electrons are unevenly distributed in the molecule. The hydrogens have a partial positive charge while oxygen has a partial negative charge
Hydrogen bond
A relatively weak bond where a hydrogen that is bonded to an electronegative atom forms a bond with another electronegative atom (like O or N). Partially positive atoms (like hydrogen) are attracted to partial negative atoms (like oxygen). Water molecules interact with each other to form hydrogen bonds.
How does hydrogen bonding contribute to the properties of water?
The large number of hydrogen bonds contributes to the stability of water. The atoms of water can also hydrogen bond to other ions and other chemical structures. When water interacts with other molecules, its orientation changes. For example, water molecules near membranes are more ordered due to the amphipathic nature of cell membranes. Liquid water has a high amount of hydrogen bonds, which accounts for its high heat of vaporization. Hydrogen bonds are disrupted as water transitions from liquid to the vapor state
How does water interact with other biological molecules?
Water can be present on/within nucleic acid and protein molecules, and it stabilizes these molecules. Substances that are required for cellular functions are dissolved in an aqueous medium, and their activities are influenced by the orientation of water molecules. Microenvironments with different structures of water form on the surface of macromolecules and lipid membranes because water interacts with groups on these molecules. Microenvironments can change the activity of ions and molecules in different areas of the cell
Tetrahedral structure
5 molecules of water form a tetrahedral structure due to hydrogen bonding. This is because each oxygen shares its electrons with 4 hydrogen atoms, and each hydrogen shares electrons with another oxygen. This tetrahedral structure is responsible for the crystal structure of ice. As ice transitions to liquid water, only a few hydrogen bonds are broken
Why does water act as a solvent?
Water has a polar nature and it is able to form hydrogen bonds, which allows it to dissolve inorganic (salts) and organic molecules
How does water dissolve salts?
Salts are held together by attraction of positively and negatively charged atoms or groups. In water, the electrostatic forces in the salt are overcome, as the ions in the salt are attracted to the dipoles of water. Na+ is attracted to oxygen, Cl- is attracted to hydrogen. In solution, the ions are surrounded by a shell of water
Which organic molecules are soluble in water?
Organic molecules that contain weakly polar groups are soluble in water, as the polar groups are attracted to molecules of water. This is why sugars and alcohols are soluble in water
Amphipathic molecules
Molecules that contain both polar and nonpolar groups
Does water dissolve amphipathic molecules?
Amphipathic molecules dissolve in water if attraction of the polar group to water overcomes the hydrophobic interactions from nonpolar parts of the molecule
Cations
Positively charged ions
Anions
Negatively charged ions
Electrolytes
Molecules that dissociate in water to form ions (cations or anions). The ions facilitate the conductance of an electrical current
Nonelectrolytes
Molecules that dissolve in water but do not carry a charge or dissolve into charged molecules. This includes sugars and alcohols
Strong electrolytes
Salts that dissociate completely in water
Salts in biological systems
Salts of alkali metals (Li, Na, K) and acids like hydrochloric and sulfuric acid dissolve completely in water at low concentrations. Since these compounds are at low concentrations in biological systems, they always dissociate completely. Salts only exist as ions in solution, not as complete molecules like NaCl. In water, the dissociated anions of organic salts react with free protons (H+) from the dissociation of water to form the undissociated acid
Acid equilibrium
Some acids, like lactic acid, do not dissociate completely in water. They form an equilibrium between the dissociated components and the components that have not dissociated. The products of the reaction reform the undissociated reactant while other molecules dissociate
What determines whether an electrolyte completely dissociates in water?
It is depends on the electrolyte anion’s affinity for a proton. There is more dissociation if the dipole forces of water that interact with the anion are stronger than the electrostatic forces between the anion and a proton
Weak electrolytes
Molecules that do not dissociate completely in water. They have a lower capacity to carry an electrical charge than strong electrolytes
Hydronium ion
H3O+. The hydronium ion forms when protons interact with the oxygen of another water molecule. Water dissociates into OH and H, producing free protons that will interact with other molecules
pH
The inverse logarithm of the number of protons in a solution, or pH= log (1/H+). Blood plasma and interstitial fluid have a neutral pH of 7.4. Gastric juice has a normal pH of 1.5-3.
Proton donor
A Bronsted-Lowry acid is described as a proton donor. For example, HCl is considered a strong acid because it totally dissociates in water, releasing a proton.
Proton acceptor
A Bronsted-Lowry base is described as a proton acceptor. For example, OH- is considered a strong base because it readily associates with protons to form water.
Weak acids
Most organic acids in biological systems partially dissociate and are classified as weak acids. They establish equilibrium between the proton donor, an anion of the dissociated acid, and a proton. The anion formed in this dissociation is a base because it can accept a proton to reform the acid
Conjugate pair
A weak acid and its base (anion) that was formed during dissociation
Small Keq
The smaller the Keq value, the less the tendency of a conjugate acid to release a proton and the weaker the acid. Water has a low Keq and is considered a very weak acid
Blood pH
In mammals, there are different intra- and extracellular aqueous environments. However, the pH of these different environments is in a dynamic steady state. The blood pH reflects changes in pH in tissues. The normal blood pH range is 7.35-7.45. Any pH value outside of this range indicates potential disease. Measuring blood pH is normal practice since irregular increase or decrease may lead to life threatening conditions.
Acidosis
A blood pH below 7.35, due to increase in acid (excess lactic acid or ketones) or the loss of the bicarbonate base. This can be caused by a metabolic or respiratory change.
Alkalosis
Blood pH above 7.45. This is also due to a metabolic or respiratory change. Metabolic alkalosis is caused by retention of bicarbonate and ingestion of bases. Respiratory alkalosis is caused by hyperventilation, overdose of some drugs, or fever
Metabolic acidosis
It can indicate conditions like diabetes, hypoxemia, and metabolism of xenobiotics that form acids. Loss of bicarbonate changes the acid-base balance and occurs in severe diarrhea, uremia, and chronic renal diseases.
Respiratory acidosis
Respiratory acidosis occurs when carbon dioxide is retained, caused by conditions that restrict exhalation of carbon dioxide. These conditions include emphysema, trauma, asthma, polio, and severe obesity
Hypoxemia
Excess lactic acid production, which can occur in long distance runners
Carbonic acid
H2CO3, which is a weak acid that is important in controlling pH in mammals. Carbon dioxide is constantly produced in catabolic reactions and is removed by the lungs. Medical conditions that restrict exhalation of carbon dioxide from the lungs lead to accumulation of carbonic acid and respiratory acidosis
CO2/HCO3 system
Carbon dioxide, when dissolved in aqueous systems, is involved in equilibrium reactions. Carbonic acid (H2CO3) is in equilibrium with dissolved carbon dioxide, or CO2 and water. Dissociated carbonic acid can also form a proton and bicarbonate (HCO3). Therefore, the increase or decrease of one component – CO2, H2CO3, H+, or HCO3- causes a change in pH. The CO2/ HCO3- system is extremely important for maintaining pH homeostasis
Henderson-Hasselbach equation
Defines the relationship between pH and concentrations of conjugate acid and base. A change in any component of an equilibrium reaction requires a corresponding change in the other components. For example. an increase in acid/protons decreases the concentration of conjugate bases and increases the concentration of the conjugate acid. pH = pK’ + log [conj. base] / [conj. acid]
Buffering
The ability of a solution to resist a change in pH when an acid or base is added. This is important for regulating pH in the body. For example, cellular production of acids leads to the acidification of blood, where the H+ is buffered by several different bases. These bases include HCO3-, hemoglobin and HPO42-. As a result, the pH of the blood will decrease due to the using of all the bases to buffer resulting in loss of buffering capacity
Buffering capacity
Depends on the concentrations of the conjugate acid and base. The higher the concentration of conjugate base, the more it can react with a high H+ concentration. However, if all bases are consumed, buffering capacity decreases and pH will also decrease drastically. For this reason, bicarbonate is very important to pH. Bicarbonate buffers against acid, and if too much is lost, the pH would decrease and the patient would likely die
Embryonic stem cells
In the postfertilization period of an egg, these cells have the potential to develop into every cell of every organ in the adult organism. They are referred to as pluripotent cells
Multipotent cells
Cells that can differentiate into a limited number of different cell types. They are found in differentiated tissues. The genome of differentiated cells can be reprogrammed to form multipotent or pluripotent cells, suggesting that parts of its genome are suppressed rather than lost entirely