Ch 9 DNA Structure And Replication Flashcards

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0
Q

History of DNA

Archibald Garrod

A

Linked inheritance to “inborn errors of metabolism” with lack of particular enzymes

Ex. PKU

First described the disease alkaptonuria (black urine) caused by enzyme error

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1
Q

History of DNA

Friedrich Miescher

Physician

A

Isolated white blood cell nuclei from pus (WBC, DNA)

Found an acid substance with nitrogen and phosphorus(negatively charged, in the nucleus)

Called it nuclein
Later it was called nucleic acid (by his student)

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2
Q

History of DNA

Frederick Griffith

A

Worked with diplodocus (2 bacteria mixed together) pneumonia (streptococcus pneumoniae) , which exists in two types

Type S (smooth) = produces capsule 
Type R (Rough) = no capsule

Capsule associated with virulence

Transformation
Grew Bacteria in petri dish exposes to heat and killed the bacteria injected it into the mouse and the mouse lived

Bacterial ability to take up DNA from its environment and incorporate it into its ow genome

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3
Q

History of DNA

Avery MacLeod and McCarty

A

Treated lysed S bacteria with protease (DNA) and DNase (enzyme)

Only DNase prevented transformation
Thus DNA is transforming principle c

  • can convert type R bacteria into S

This allow them to figure out what the Bacteria was picking up that was causing the transformation

Transforming Principle
They took type R and Type S mixture and added protease (which breaks down protein) to one and DNase (DNA fragments) to the other

Transformation could not occur without DNA

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4
Q

History of DNA

Alfred Hershey and Martha Chase

A

Viruses can infect E. coli bacteria

Used radioactive 35S and 32P to label protein

The blender experiments showed that the virus transfer DNA not protein into bacterial cell
thus DNA is genetic material

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5
Q

Discover Structure of DNA

Phoebus Levine

A

Identified the 5-carbon sugars ribose and deoxyribose

Discovered that the three parts of a milestone are found in equal proportions

  • sugar
  • phosphate
  • Base
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6
Q

DNA Structure

A

A single building block is a nucleotide

Each nucleotide is composed of

  • a deoxyribose sugar H
  • a phosphate group PO4-
  • a nitrogenous base one of fours types
    • Adenine (A), Guanine (G) are purines
    • Thymine (T), Cytosine (C) are pyrimidines

Two polynucleotide chains align forming a Double Helix

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7
Q

Discovering DNA Structure

Erwin Chargaff

A

Analyzed base composition of DNA from Various species and observed regular relationships:

A=T and C=G

If A is used 20% T=20% then C is used 30% G= 30%

Discovered that DNA was made up of all 4 bases, but not equally used

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8
Q

Discovering the structure of DNA

Rosalind Franklin and Maurice Wilkins

A

Distinguished two forms of DNA
“A” form, which is dry and crystalline (compact no water)
“B” form, which is wet and cellular (lots of water)

Used a X-Ray diffraction technique
It took Franklin 100hrs to obtain photo 51 of B-form of DNA
Franklin Reasoned that the DNA is a helix with symmetrically organized

Crystallized the molecule then bombard with X-Ray how the light bounces out then you can see the shape

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9
Q

Molecular Definition of a Gene

A

A gene is a segment of DNA
It directs the formation of RNA to produce protein

The protein(or functional RNA) creates the phenotype

Information is conveyed by the sequence of the nucleotide

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10
Q

DNA Replication Early Beliefs

A

At first research suggested DNA might replicate in any 3 possible ways

Conservative: old/old + new/new
Semiconservative: old/ new + new/old
Dispersive : mixed old & new

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11
Q

DNA Replication

Mathew Meselson and Franklin Stahl

A

Grew E. Coli on media containing 15N for several generations
- thus making all DNA heavy

Shifted bacteria to media containing 14N

Then traced replicating DNA

Determined that DNA replications is semi conservative

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12
Q

Discovering the structure of DNA

James Watson and Francis Crick

A

Did not preform experiments

Rather they used the earlier research and inferences from model building with cardboard cutouts to solve the structure of DNA

They built a model based on published and unpublished findings

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13
Q

Antiparallelism

A

The opposing direction head to toe is called antiparallelism

Note that one strand of the double-helix runs in a 5’ to 3’ direction and other strand runs in a 3’ to 5’ direction

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14
Q

DNA Complementary Base Pairs

A

Adenine pairs with thymine
Cytosine pairs with Guanine

The key to the constant width of the double helix is specific pairing of purines and pyrimidines via hydrogen bonds

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15
Q

DNA is highly Condensed

A

DNA coils around proteins called Histones forming a bead on a string like structure

The bead part is called the nucleosome
The nucleosome in turn winds tighter forming chromatin

Chromatin fibers attach in loops to scaffold proteins

16
Q

Nucleosome

A

the bead part of the DNA

17
Q

Chromatin

A

The nucleosome in turn winds tighter to form chromatin

18
Q

Scaffold proteins

A

Chromatin fibers attach in loops to scaffold proteins

19
Q

Replication fork

A

A site where DNA is locally opened is called the replication fork

20
Q

Overview of DNA replication

A

DNA replication occurs during the S phase of the cell cycle prior to cell division

Human DNA replicates about 50 bases/sec

A human chromosome replicates simultaneously at hundred points along its length

21
Q

Enzymes in DNA Replication

Helicase

A

An enzyme that uncoils (breaks the hydrogen bond) double-stranded DNA, allowing it to replicate

22
Q

Enzymes in DNA Replication

Binding Proteins

A

Stabilize separate strands keeps the strand separate for copying

23
Q

Enzymes in DNA Replication

Primase

A

Adds short primer to template strand

Can put the new nucleotide down to start a new strand

24
Q

Enzymes in DNA Replication

DNA Polymerase

A

Bonds nucleotide to form new strands elongates after the primer primase start the strand 3’ to 5’ direction

Adds DNA nucleotides to the RNA primer

On the Lagging strand Polymerase proofreading activity checks and replaces incorrect bases

25
Q

Enzymes in DNA Replication

Ligase

A

Joins Okazaki fragments and seals other nicks in sugar phosphate backbone
Enzyme removes RNA primers

26
Q

Activities at Replication Fork

Lagging strand

A

Lagging strand is worked backwards directions each little fragment created is OKAZAKI FRAGMENTS