Cell Ultrastructure & Proteins Flashcards
What is the structure and function of the nucleus
envelope (double membrane) continuous with RER
pores allow for exchange of molecules
has a central nucleolus
F:
store and replication of DNA
control of gene expression and therefore protein production
Nucleolus Structure and Function
small spherical found in neucloplasm
fibrillar and granular components forming an ill defined matrix
F:
ribosome assembly
pre rRNA transcription processing and assembly
Mitochondria structure and function
Envelope form Inter-membrane space
foldings of inner membrane forming cristae (lots of ATP-synthase
matrix containing mDNA and enzymes for, LR, KC, OP
contains 70s ribosomes
Site of link reaction, Citric acid cycle and oxidative phosphorylation leading to production of ATP
Smooth ER structure and function
Series membranes folded to form cisternae held in place by cytoskeleton
site of steroid, lipid synthesis, storage, transport
RER structure and function
Series membranes folded to form cisternae
has bound 80s ribosomes
site of protein synthesis proteins enter whilst still being synthesised
post translational folding and modification of proteins, storage and then transport
Lysosomes
membrane bound organelles formed by Golgi
contain hydrolytic enzymes (catalase) remove miss-folded proteins and unwanted cell structures
(bigger than peroxisomes)
Peroxisomes
small membrane bound organelle
contains oxidative enzymes that break down hydrogen peroxide preventing cellular damage
also involved in fatty acid breakdown and lipid synthesis
derived from RER
Golgi apparatus
Convex shaped membranous cisterane
further modification of proteins and lipids addition of glycocalyx to form glycolipids/glycoproteins
Packs proteins into secretory or transport vesicles
Centrioles
Pair of cylindrical structures formed out of tubulin to form microtubules (9+0 arrangement)
Contained within the centrosome
Organise spindle fibres during cell division
Duplicates itself during G2 phase of cell division
Ribosome structure and function
not membrane bound
made from rRNA two subtypes 80S found in cytosol and on RER
70S only found in the mitochondria
Site of translation and production of ppc
Three components of cytoskeleton
Function
Microfilaments (thinnest) actin: muscle contraction cytokenisis
Intermediate filaments keratin fibres (organelle anchoring)
Microtubules (largest) tubuiln
All three:
help to maintain cell shape and structure
enable movement of organelles within cytosol
enable the movement of chromosomes to occur during mitosis/meiosis
Motor proteins
Bind strongly to cytoskeletal filaments allostery release from filament conformational relaxation rebinding
Allows intracellular movement of organelles and molecules
Protein Functions
S- structural (Keratin) T- transport (Hb) E- enzymes A- Antibodies M-membranes and receptors H- hormones and ligands
Primary protein structure
Sequence of amino acids in a polypeptide chain
Amino acids joined via condensation reaction to form a peptide bond and water
Different R groups on amino acids different properties charged, polar, hydrophilic/phobic determines folding
Secondary Strucuture
folding of the ppc into a helices or B pleated sheets
Held in place by H bonds between C=O (-) and NH group (+)
Tertiary Strucutre
further folding of ppc:
Proteins fold into most energetically favourable formation
Ionic, disulphide (cystine), additional hydrogen bonds, and LDF’s all occur between adjacent R groups. NB (disulfide>ionic>hydrogen>LDF’s)
Polar hydrophilic R groups tend to be on the outside of a protein whereas non-polar R groups are on the inside.
Some proteins may become active at this stage
Quaternary Strucutre
When:
two or more ppc chains join together
OR/AND
presence of a prosthetic group e.g. haem group in Hb or the Zn2+ ion
(Zinc fingers suggest DNA regulatory proteins)
Differences between fibrous and globular proteins
Fibrous:
long & insoluble
structural roles
Globular:
compact soluble (hydrophilic outside)
metabolic roles e.g. enzymes hormones
Features of Enzymes
How do they lower the activation energy of a reaction?
Globular proteins
Biological catalysts
Specific
alternative metabolic pathways bring reactants together to form ESC
puts strain on bonds in reactant meaning they are broken and form more easily
What is the turnover rate
amount of molecules that can be converted in a given period of time by a single catalytic site
How is protein function regulated?
Synthesis: proteins are only synthesised when they are needed. Are signals in place to trigger and halt synthesis?
Controlled via feedback inhibition catalytic activity of an enzyme lower down in a synthesis pathway is halted by and increase in concentration of a product further up in the pathway prevents unnecessary protein synthesis
Localisation:
Is the protein where it needs to be? Is the sorting signal correct and present? Is it being stored somewhere?
Modification:
Does the protein need to activated or inactivated.
Degradation:
is it needed any more? Are unnecessary and damaged proteins being broken down?
What are cofactors?
May be required for some enzymes functions:
Non protein components:
o Organic molecules (coenzymes) e.g. vitamins.
o Inorganic ions (Cu2+ Zn2+).
o Cofactors that are bound permanently= prosthetic groups.
Cause an allosteric change in shape of active site making it more complimentary to the substrate
How are proteins activated / deactivated?
Phosphorylation:
Activating, addition of phosphate group to amino acid side chain usually tyrosine threonine or serine.
catalysed by a kinase
Dephosphorylation:
Deactivating, removal of phosphate group catalysed by a phosphatase
Cdk and cyclin example
catalytic protein involved heavily in regulating cell division cylclin dependant kinase
binding of cyclin regulatory proteins via cooperative binding to allosteric binding sites on Cdk
conformational change exposes binding site on Cdk activating it.