Cell Structure Flashcards

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1
Q

Define magnification

A

The degree to which the image size is larger than the object itself.

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2
Q

Define resolution

A

The ability to distinguish between two separate points/objects that are close together, in detail.

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3
Q

What are microscopes, and what can they do?

A

Microscopes are instruments which enlarge an object to a chosen scale. As a result, scientists have been able to discover the sub-cellular structures of cells and view the functions of the structures, improving scientific understanding.

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4
Q

Cell theory was named after the ability to see individual cells. What does this theory state?

A

1) Both plant and animal tissue are composed of cells
2) Cells are the basic unit of all life.
3) Cells only develop from existing cells.

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5
Q

What the advantages of using a light microscope?

A

Easily available, cheap, can be used in the field, and can observe living, as well as dead specimens.

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6
Q

What are the disadvantages of using a light microscope?

A

Low magnification and resolution. Less detail can be seen as a result. Can only show 2D images. Images tend to be low contrast, as most cells do not absorb a lot of the light.

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7
Q

What types of lenses do compound microscopes have?

A

1) Objective lens - placed near the specimen.

2) Eyepiece lens - specimen viewed through.

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8
Q

How does a light microscope work?

A

The objective lens produces a magnified image, which is further magnified by the eyepiece lens. The objective/eyepiece configuration allows for greater magnification and reduced chromatic aberration. Illumination is provided by a light underneath the sample, (which is on a slide, on the stage) . Some microscopes allow illumination from above with an opaque specimen.

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9
Q

Describe a dry mount sample preparation. Give examples of specimen that can be viewed.

A

Solid specimens are viewed whole or cut into very thin slices with a sharp blade. This is called sectioning. The specimen is placed in the centre of the slide and cover slip placed over the sample. e.g. hair, pollen, dust or insect parts, as well as muscle tissue and plants.

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10
Q

Describe a wet mount sample preparation. Give examples of specimen that can be viewed.

A

Specimens are suspended in a liquid, like water or an immersion oil. A cover slip is placed on from an angle. e.g. aquatic sample and other living organisms.

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11
Q

Describe a squash slide sample preparation. Give examples of specimen that can be viewed.

A

A wet mount is first prepared. A lens tissue is used to press down the cover slip. Potential damage to the cover slip can be avoided by squashing the sample between two microscope slides. This is a good technique for soft samples. e.g. root tip squashes are used to view cell division.

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12
Q

Describe a smear slide sample preparation. Give examples of specimen that can be viewed.

A

The edge of a slide is used to smear the sample, creating a thin, even coating on anther slide. A cover slip is then placed over the sample. e.g. a smear slide for a sample of blood. This helps view the cells easily.

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13
Q

How is resolution limited?

A

Limited by the diffraction of light as it passes through samples. The structures present in the specimens are very close together and the light reflected from individual structures can overlap due to diffraction. This means the structures are no longer seen as separate entities and detail is lost. Also determined by the wavelength of light as it passes through the sample. Wavelength of light is approx. 500nm.

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14
Q

What is diffraction?

A

The bending of light as it passes close to the edge of an object.

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15
Q

What happens to an image if magnification is increased, but resolution is not?

A

As magnification is increased, the limited resolving power gives a blurred image.

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16
Q

What are the benefits of using stains?

A

The cytosol of cells and other structures are often transparent. Stains increase the contrast as different components within a cell absorb the stain to differing degrees. The greater the contrast, the more visible the cells, and the easier the identification.

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17
Q

How do you prepare a slide for staining?

A

Place the sample/specimen on the slide and allow to air dry. This is heat - fixed by passing through a flame. The specimen adheres to the slide and will take up the stains.

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18
Q

What can be used for positive stain technique?

A

Crystal violet or methylene blue are positively charges dyes, which are attracted to negatively charged materials in the cytoplasm, leading to the staining of cell components.

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19
Q

What can be used for negative stain technique?

A

Nigrosin and Congo red are negatively charged and are repelled by the negatively charged cytosol. The dyes stay outside the cells, leaving the cells unstained, which stand out from the stained background

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20
Q

What is differential staining?

A

Helps distinguish between two types of organisms that would otherwise be hard to identify. It can also differentiate between different organelles of a single organism with a different tissue sample.

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21
Q

Describe gram stain technique

A

Used to separate bacteria into two groups, Gram-positive bacteria and Gram-negative bacteria. Crystal violet is applied to a specimen on a slide, then iodine, which fixes the dye. The slide is washed with alcohol. The Gram-positive retain the crystal violet stain and will appear blue or purple under a microscope.
Gram negative bacteria have thinner walls and lose the stain. They are stained with safranin dye, which is called a counterstain. The bacteria then appear red.

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22
Q

What effect does penicillin have on Gram-positive and Gram-negative bacteria?

A

Gram-positive are susceptible to penicillin, which inhibits the formation of cell walls. Gram-negative have much thinner cell walls, so are not susceptible.

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23
Q

Describe acid-fast technique

A

Used to differentiate species of Mycobacterium from other bacteria. A lipid solvent is used to carry carbolfuchsin dye into the cells being studied. The cells are washed with dilute acid-alcohol solution. Mycobacterium are not affected by the solution and retain the carbolfuchsin stain, which is bright red. Other bacteria lose the stain and are exposed to methylene blue.

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24
Q

How are pre-prepared slides produced?

A

1) Fixing - chemicals like formaldehyde are used to preserve specimens in as near-natural state as possible.
2) Sectioning - specimens are dehydrated with alcohols then placed in a mould with wax or resin to form a hard block. This can be sliced thinly with a microtome.
3) Staining - specimens treated with multiple stains to show different structures.
4) Mounting - specimens secured to a microscope slide and a cover slip placed on top.

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25
Q

Name some rules for scientific drawings

A

Include a title, state magnification, use a sharp pencil, use white, unlined paper, use 50% of the page, draw a smooth, continuous line, do not shade, annotate, label lines should not cross or have arrow heads, etc.

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26
Q

What are the units are measurements and how are they converted between?

A

Meter, centimetre, millimetre, micrometre, nanometre and picometre. Getting smaller x1000. Getting bigger /1000

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27
Q

How is magnification calculated?

A

magnification = size of image / actual size of the object

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28
Q

Why does an eyepiece graticule need to be used?

A

The true magnification of the different lenses can vary slightly from the magnification stated, so every microscope and lens had to be calibrated using an eyepiece graticule and a slide micrometer.

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29
Q

What is an eyepiece graticule?

A

A glass disc marked with a fine scale of 1 to 100. The scale has no units and remains unchanged whichever objective lens is in place. The relative size of the divisions increases with each increase in magnification.

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30
Q

What is a stage micrometer?

A

Used to to calibrate the scale on the graticule at each magnification. A microscope slide with a very accurate scale in micrometres engraved on it. The scale marked on the micrometre slide is usually 100 divisions = 1mm, so 1 division = 10µm. You calibrate the eyepiece graticule scale for each objective lens separately. Once all 3 lenses are calibrated, if you measure the same cell using the 3 different lenses you should get the same actual measurement each time.

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31
Q

What are the benefits of using an electron microscope?

A

A beam of electrons with a wavelength of less than 1nm is used to illuminate the specimen. More detail of cell ultrastructure can be seen because electrons have a much smaller wavelength than light waves. They can produce images with magnifications of up to x500 000 and still have a clear resolution.

32
Q

What are the disadvantages of using electron microscopes?

A

Very expensive pieces of equipment, which can only be used in a controlled environment, in a dedicated space. Specimens can also be damaged by the electron beam and artefacts can form in the preparation process, e.g. air bubbles.

33
Q

How do transmission electron microscopes (TEM) work?

A

A beam of electrons are transmitted through a specimen and focussed to produce an image. The best resolving power of 0.5nm.

34
Q

How do scanning electron microscopes (SEM) work?

A

A beam of electrons are sent across the surface of a specimen, and the reflected electrons are collected. The resolving power id 3-10nm, so the resolution is not as good as TEM. 3D images can be produced, giving valuable information.

35
Q

How are samples prepared in an electron microscope, and why in a specific way?

A

Specimen prep involves fixation using chemicals, staining with heavy metals, and dehydration with solvents. Samples for TEM will be set in resin and may be stained again. Samples for SEM are fractured and exposed, and will be coated with heavy metals. Used because there is a vacuum inside an electron microscope, to ensure beams in straight lines.

36
Q

What are the benefits of these methods?

A

1) Fixation stabilises the sample, and prevents decomposition.
2) Dehydration prevent vaporisation of water in the vacuum, as vaporisation would damage the sample.
3) Embedding allows thin slices to be obtained.
4) Staining with heavy metals creates contrast in electron beams.

37
Q

Compare a light microscope to an electron microscope

A

Light: inexpensive, small and portable, simple preparation, sample prep does not lead to distortion, no vacuum, natural colour of sample seen, specimens can be living or dead, magnification up to x2000, resolving power 200nm.
Electron: expensive, large and needs installing, complex preparation, vacuum, black and white images, so colour added digitally, specimens are dead, magnification over x500 000, resolving power of TEM is 0.5nm and SEM 3-10nm.

38
Q

What are artefacts? Give examples

A

A visible structural detail caused by processing the specimen and is not a feature of the specimen. Appear in both light and electron microscopes. e.g. bubbles that get trapped under a cover slip. The prep of electron specimens sees changes in cell ultrastructure. Seen as a loss of continuity in membranes, distortion of organelles and empty spaces in the cytoplasm.

39
Q

What is an example of an artefact under much discussion and controversy?

A

Mesosome was once thought of as an organelle in bacteria, but the use of a fixing with a non-chemical technique called cryofixation, meant the mesosomes were no longer visible.

40
Q

How do fluorescent microscopes work?

A

A higher light intensity is used to illuminate a specimen that has been treated with a fluorescent chemical, known as fluorescent dye. Fluorescent is the absorption and re-radiation of light. Light of a longer wavelength and lower energy is emitted, and used to produce a magnified image.

41
Q

How does a laser scanning confocal microscope work?

A

A single spot of focussed light across a specimen is moved (point illumination). This causes fluorescence from the components labelled with a dye. The emitted from the specimen is filtered through a pinhole aperture. Only a light radiated from very close to the focal plane is detected. Light emitted from other parts of the specimen would reduce the resolution and cause blurring . This unwanted radiation does not pass through the pinhole, so is not detected. A laser is used instead of light to get higher intensities, which improves illumination.

42
Q

What are the advantages and disadvantages of laser scanning confocal microscopes?

A

Non-invasive, can see the distribution of molecules within cells, can produce 2D and 3D images. Very expensive to use and install.

43
Q

What are the two types of cell?

A

Eukaryotic and prokaryotic.

44
Q

What are prokaryotic cells like?

A

Single-celled organisms with a simple structure of a single undivided internal area (cytoplasm) composed of cytosol, which is water, salts and proteins.

45
Q

What are eukaryotic cells like?

A

Multicellular organisms like animals, plants, and fungi. More complicated internal structure, containing a membrane - bound nucleus (nucleoplasm) and cytoplasm, containing membrane -bound organelles.

46
Q

What does metabolism involve?

A

The synthesis and the breaking down of molecules. Different sets of reactions take place in different parts of the cell ultrastructure. The reactions take place in the cytoplasm.

47
Q

How are membrane-bound organelles useful?

A

Provide a distinct environment and conditions for the different cellular reactions.

48
Q

How are plasma membranes effective?

A

Selectively permeable and control the movement of substances in and out of the cell and organelles. Membranes are effective barriers in controlling which substances enter and exit, but are fragile.

49
Q

What is the function of cytoplasm?

A

Internal fluid component of the cell.

50
Q

What is the function of the nucleoid (chromosomal DNA)?

A

Irregularly shaped region of cytoplasm that contains all or most of the DNA.

51
Q

What is the function of plasmids?

A

Autonomous circular DNA that may be transferred between bacteria (horizontal gene transfer).

52
Q

What is the function of ribosomes?

A

Complexes of RNA and protein used for protein synthesis. Size of 70S.

53
Q

What is the function of the plasma membrane?

A

Selective barrier surrounding the cell.

54
Q

What is the function of the cell wall?

A

Rigid peptidoglycan covering maintaining shape and prevents bursting (lysis).

55
Q

What is the function of the slime capsule?

A

Polysaccharide layer used for protection against desiccation (drying out) and phagocytosis.

56
Q

What is the function of the flagella?

A

Projection containing a motor protein to enable movement.

57
Q

What is the function of pili?

A

Hair like extensions that enable adherence to surfaces or mediate bacterial conjugation.

58
Q

Describe the nucleus

A

In animals and plants.
Surrounded by a double membrane (nuclear envelope) with nuclear pores. Contains the nucleolus.
Stores DNA as chromatin (chromosomes). Coordinates the cells activities e.g. metabolism, growth, protein synthesis etc.

59
Q

Describe the plasma membrane

A

All eukaryotes and prokaryotes.
Phospholipid bilayer containing cholesterol and proteins.
Surround the cell to provide a physical, selective barrier. Allows entry and exit of substances, cell communication, and detection of environmental changes.

60
Q

Describe the nucleolus

A

In animals and plants.
Small spherical structure, which is the largest structure in the nucleus.
Domain for protein synthesis, the production of ribosomes, and ribosome biogenesis.

61
Q

Describe the rough endoplasmic reticulum

A

In animals and plants.
Series of connected flattened sacs covered in ribosomes, in the cytoplasm.
Main role is protein synthesis, producing essential proteins for bodily function e.g. secretory and membrane proteins. Metabolises carbohydrates.

62
Q

Describe the Golgi apparatus

A

In animals and plants.
Complex of vesicles and folded membranes, in the cytoplasm.
Modifies proteins, and involved in the secretion and intracellular transport, with protein into vesicles.

63
Q

Describe lysosomes

A

In animals only.
Membranous vesicles formed by the Golgi. Contains digestive enzymes.
Digestion and waste removal of excess or worn organelles.

64
Q

Describe the cell wall

A

In plants and prokaryotes.
Made of cellulose in plants, and peptidoglycan in prokaryotes.
Provides tensile strength and protection from osmotic strength. Creates turgor pressure in plants, and provides shape in prokaryotes.

65
Q

Describe the smooth endoplasmic reticulum

A

In animals and plants.
Meshwork of fine disc-like tubular membranous vesicles. Part of a continuous membrane organelle.
Synthesis of lipids and steroid hormones. Detoxification of harmful metabolic byproducts, and storage and metabolism of calcium ions.

66
Q

Describe ribosomes

A

In eukaryotes and prokaryotes.
Sphere shaped structure composed of RNA and proteins. Free in the cytoplasm and often attached to the RER.
Protein synthesis in decoding mRNA and the formation of peptide bonds.

67
Q

Describe mitochondria

A

In animals and plants.
Surrounded by a double membrane which is semi-autonomous. Some organism lack them.
Generate chemical energy needed to power the cell’s biochemical reactions. Energy produced is stored as ATP and used for aerobic respiration.

68
Q

Describe chloroplasts

A

In plants only.
Contain chlorophyll in a high concentration, giving plants a green pigment.
Site of photosynthesis, where energy from the sun is converted into glucose and oxygen. Used for growth, respiration etc.

69
Q

Describe centrioles

A

In animals, and sometimes plants.
Cylindrical organelle composed of tubulin. Has a 9:2 arrangement.
Produces cilia during interphase and the aster and spindle fibers during mitosis.

70
Q

Describe the cytoplasm

A

In eukaryotes and prokaryotes.
Solution composed of water, salts and proteins. All enclosed by the plasma membrane.
Acts as a buffer and protects the genetic material of the cell and sub-cellular organelles from damage from movement and collisions.

71
Q

Describe the vacuole

A

Only in plants.
Closed sacs made of membranes with inorganic and organic molecules like enzymes. Can change shape and be temporary. Surrounded by a membrane called the tonoplast.
Used for turgor pressure in plants. Stores water, nutrients and waste material of the cell. Supports growth, and protect the cell in plants.

72
Q

What evidence is there that endosymbiosis occurs?

A

Mitochondria have a double membrane, its own DNA (so can do protein synthesis), similar size to bacteria, has its own membrane bound organelles, e.g. ribosomes.

73
Q

How is genetic material arranged in eukaryotes and prokaryotes?

A

‘Naked’ DNA in prokaryotes. Not associated with proteins, lipids, or any other molecules to protect it.
DNA is in chromosomes and associated with histone protein in eukaryotes.

74
Q

What are the average cell diameters in eukaryotes and prokaryotes?

A

0.5-5µm in prokaryotes

10-100µm in eukaryotes

75
Q

What are the ribosome sizes in eukaryotes and prokaryotes?

A

70S of 10-20nm in prokaryotes

80S of 22nm in eukaryotes