Cell Division Flashcards

You may prefer our related Brainscape-certified flashcards:
1
Q

What are the major groups of microbes studied by microbiologists?

A
Prokaryotes eg. bacteria
Eukaryotes eg. algae
Viruses
Archaea
Protists
Fungi
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

How do microbes affect human history?

A

Food availability- destroy crops, but preserve food eg. bread, wine, cheese, chocolate.
Microbial diseases eg. black plague in Europe, Smallpox in Americas.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

How were microbes first discovered?

A

Light microscope invented in the 1600s.

Robert Hooke observes small eukaryotes, and he is credited with being the first to discover small microbes.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Why is Anton van Leeuwenhoek important?

A
He was a Dutch scientist who invented the first compound micoscope. He was the first to observe living cells- blood cells and protists.
Discovered bacteria (prokaryotes) in 1676.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

What proof is there that microbe arise only from other microbes?

A

There is no spontaneous generation:
1688- Redi showed that flies don’t spontaneously generate.
1861- Pasteur showed that microbes don’t grow in liquid until introduced from outside.
Wouldn’t grow in sterile liquid unless something else was introduced.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

What makes microbial species difficult to classify?

A

Difficult to distinguish by shape- many are similar.
Often reproduce asexually.
Pass DNA to each other without reproduction.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

How are microbial species classified?

A

Biochemical properties- Gram stain, ability to metabolise different substrates.
DNA sequence- bacterial genomes are relatively small.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

How are bacteria similar and different to archaea?

A

Similar shape and size, but very different biochemistry.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

Describe Gram positive and Gram negative cells.

A

Gram positive have one membrane and a thick cell wall made of peptidoglycan.
Gram negative have two membranes, an inner and outer one, with periplasm in between. The peptidoglycan cell wall is in between the membranes, above the periplasm.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

Describe the different bacterial shapes, arrangements and sizes, and why they are important.

A
Coccus- spherical.
Bacillus- Rod:
- coccobacillus- very short and plump (Brucella abortus)
-streptobacilli (Bacillus subtilis)
- Diplobacilli
Spirillum- helical, comma, twisted rod:
-spirochete- spring-like, flexible (Treponema pallidum)
-vibrio- gently curved (Vibrio cholera)
-spirilla- rigid (Borrelia species)
Pleomorphic- variable in shape (Corynebacterium).
Polar flagella- all at one end.
Peritrichous flagella- all over.

Influences how they grow and propagate.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

What are the subdivisions of cocci?

A

Diplococci- remain in pairs after dividing.
Streptococci- remain in chains after dividing.
Tetrads- divide in two planes and remain in groups of four.
Sarcinae- divide in three planes and remain in cube-like groups if eight.
Shaphylococci- divide in multiple planes and form grape-like clusters or sheets.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

What are the subdivisions of bacilli?

A

Most are single rods.
Diplobacilli- pairs after division.
Streptobacilli- chains after division.
Coccobacilli- ones taht are so short and fat that they look like cocci.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

How goes microbial growth work?

A

Increase in cell number, not cell size.

One cell becomes a colony of millions of cells- arise from one microbe.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

Describe the dilution and plating method?

A

Direct method.
Grow a culture, then create a serial dilution set (usually by adding 100ul sample to 900ul solution to make 1ml culture, then take 100ul culture one to culture two etc). Plate dilutions, spead evenly and incubate. Use dilutions that grew a good number of clear colonies to work out CFUs per ml.
(can look for antibiotic resistance).

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

What is the cell counting method?

A

Culture added onto grid of 25 squares. Culture fills volume over squares by capillary action. Depth under cover glass and area of squares are known, so bacterial suspension can be calculated (depth x area). All cells in squares are counted and averaged. Calculation can be done.
Count how many colonies you see. Can use a light or electron microscope. Count live and dead cells.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

How is spectrophotometry used in bacterial number estimation? What are some problems?

A
Indirect method.
Measures turbidity (measure of water clarity- material suspended in water that disturbs light passage).
Optical density (measure of amount of light absorbed by bacterial suspension) is a function of cell number.

Medium may not be completely clear. Bacteria may be in aggregates. Bacteria may be photoreceptive. Bacteria can make molecules eg. polysaccharides and proteins which can interfere and gives false readings.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
17
Q

Give an example of measuring metabolic activity and why it is good?

A

Measuring of carbon dioxide production during fermentation.

Can look at under different growth conditions.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
18
Q

What is dry weight measurement, and what are some problems with it?

A

Measurement of dry weight when individual cells/colonies can’t be distinguished as they are too dense or aggregated.
Not very accurate or time consuming, but sometimes only option eg. fungal filaments.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
19
Q

What are the environmental limits on microbial growth?

A

Nutrient source, temperature, pH, osmolarity, oxygen, pressure.
Different optimum conditions for each species.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
20
Q

What are the phases involved in bacterial growth and food availability?
What happens in each phase?
What do bacterial cells do when food is low?

A

Lag phase- bacteral growth low, food high.
Log phase- bacterial growth increases, food decreases.
Declining growth phase- bacterial growth starts to plateau, food decreases more.
Endogenous repiration phase- bacterial growth starts to decrease, food is low.
Food to mass ratio decreases throughout each stage.

Sporulation in conditions of nutrient stress. Ensure genetic line is safe. (eg. B.subtilis) Can be viable but non-culturable.
Programmed cell death.
Dormancy.

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
21
Q

Describe the categories of temperature and the microbes that survive in each one.

A

Cold temp- 0-20oC- psychrophiles.
Moderate temp-12-45oC- mesophile.
High temp- 40-80oC- themophile.
Very high temp- 65-105oC- extreme thermophile (many archaea found here)

22
Q

Describe the effects of pressure on microbes.

A

Barosensitive organisms die as pressure increases.
Barotolerant organisms grow up to a certain pressure, but die at higher pressures.
Barophiles require high pressure to grow, though they still die at higher pressures.

23
Q

Describes some locations of extreme environments, and microbes that can survive there.

A

Sea ice- cold loving microbes (psychrophiles)- Polaromonas vacuolata .
Deep sea vent- Heat loving microbes (thermophiles and hyperthermophiles)- Methanopyrus kandleri .
Sulphuric spring- acid loving microbes (acidophiles)- Sulfolobus acidocaldarius .
Salt lake- salt loving microbes (halophiles)-Haloferax volcanii.
Soda lake- alkali loving microbes (alkaliphiles)- Natronobacterium gregoryi.

24
Q

What is the most common method of bacterial cell division?

A

Binary fission.

25
Q

What is generation time?

A

The time it takes for one bacterial cell to undergo DNA replication, elongation and septum formation, to then separate into two cells. This is an asexual process.

Highly variable- 20 mins to 24 hrs or longer in natural environment.
(E.coli- 20 mins, M.tuberculosis-12 hrs).
Slow growth usually correlated with lower metabolic rate and efficiency.

26
Q

Describe the process of endospore formation (sporulation) in Bacillus subtilis.

A

B.subtilis is a Gram positive rod shaped bacterium.
Most of the chromosome is at one side- ftsZ ring forms asymmetrically.
One of the chromosomes gets pumped into the forespore.
Cell and forespore become different biochemical environments.
Engulfment of forespore produces membrane.
Gene for spore coat are never transcribed in mother cell.
Mother cell sacrifices itself in the end.
Spore is free living and can germinate under right conditions. It becomes a normal cell.
Can stand high temperatures and proteases.

27
Q

Describe the reproductive strategy of Bdellovibrio bacteriovorus.

A

Bdello is found everywhere and is investigated as a living antibiotic. Solitary hunter that uses a single polar flagellum to seek other Gram negative bacteria. Invades the periplasm of a Gram negative cell.
Uses cytoplasm as a food source.
Can control its cell division so there are no wasted cells.
Cell won’t get an infection from another cell id Bdellovibrio is already there.
Protects chickens from salmonella.
Stages involve elongation, synchronous septation, maturation and lysis.

28
Q

Describe the life cycle of Streptomyces coelicolor.

A

Streptomyces is Gram positive, prolific in antibiotic production (Half of currently used antibiotics come from streptomyces.). Undergoes morphological differentiation.
Stages are free spore, substrate mycelium, aerial mycelium, spore development, growth, release of spore and so on.
This would have to be a dry weight measurement- nothing else would work.
Not every cell in the population is the same- division of tasks.
Behave similar to a fungus, but they are prokaryotes.

29
Q

Describe the Epulopiscium fishelsoni life cycle.

A

Epulopiscium fishelsoni is a Gram positive bacterium with a symbiotic relationship to surgeonfish.
Unusual form of sporulation.
One to twelve daughter cells can grow inside parent cell, until parent lyses.
The new cells are active, unlike endospores which are dormant.
This unusual reproductive method may allow transfer of bacteria from one host to another.

30
Q

Describe the Gemmata obscuriglobus cell budding cycle.

A

Gemmata obscuriglobus is a freshwater spherical budding eubacterium.
Budding- daughter cell forms unequally from mother cell, then breaks off.
Budding not common of bacteria.
DNA transfer from parent to offspring soon after formation of daughter bud.
DNA transferred by a connecting passage between the two until maturation and separation occurs.
Young bud has naked DNA, but it is bound by a membrane derived from the mother and daughter.
Daughter cell can live freely and bud itself.
Mature cells can bud multiple times in their lifetime.
Absence of ftsZ gene in this species of bacteria- no binary fission like action at all.

31
Q

Describe the baeocyte production in the cyanobacterium Stanieria.

A

No binary fission.
Starts as a small spherical cell (1-micrometre diameter)- this is baeocyte.
Baeocyte grows and forms a vegetative cell around 30 micrometers in diameter.
Cellular DNA replicated many times, cell produces thick extracellular matrix.
Vegetative cell transitions into a reproductive phase- undergoes a succession of cytoplasmic divisions to produce more baeocytes.
ECM eventually tears open, releasing the baeocytes.

32
Q

Describe the process of binary fission.

A

Binary fission is a continuum of processes that are interlinked.
A bacterial cell elongates and DNA is replicated. The cell wall and plasms membrane begin to divide. A cross-wall forms completely around divided DNA. Cells can then separate, but they don’t always do.

33
Q

What is the first step of binary fission?

How does cell growth and elongation work in different types of bacteria?

A

First step is cell growth.
Cell wall is a dynamic structure that can be remodelled, and elongation occurs through formation of new peptidoglycan.
Staphylococcus aureus doesn’t elongate, just divide. They don’t separate- cell walls remain stuck together. B.subtilis and E.coli elongate in the middle of the cell, then divide. Coryne bacterium diphtheriae elongate at the ends of the cell, then divide.

34
Q

How is the bacterial cell wall made up and what does it do?

A

Sacculus made of peptidoglycan:
Sugar chains wrapped in circles around cell-
“glyco” = “sweet”.
Sugar chains linked to each other by short polymers of amino acids-
amino acid = “peptide”.
Combination of cross-linked peptide and polysaccharide components.

Stops cells from imploding or exploding.
Gives cell structure and rigidity.

35
Q

What is peptidoglycan and how is it made?

A

Peptidoglycan: Rigid layer that provides strength

Polysaccharide composed of
N-acetylglucosamine (NAG or G) and N-acetylmuramic acid (NAM or M).
Amino acids
Lysine or diaminopimelic acid (DAP).
Cross-linked differently in gram-negative bacteria and gram-positive bacteria.
Crystal violet in Gram stain shows up in peptidoglycan.
Cell wall- positive has 50-90% peptidoglycan, negative has 10% peptidoglycan.

36
Q

What is the basic repeating unit of peptidoglycan?

A

N-acetylglucosamine (NAG) and N-acetylmuramic acid(NAM) linked by a beta-1,4- linkage. DAP is linked to NAM through peptide cross links.

37
Q

How is the bacterial cell wall assembled?

How to antibiotics play a role?

A

Transglycosylase enzyme is responsible for linking units together t make peptidoglycan.
Many antibiotics block cell wall biosynthesis, which kills microbes. Eg. Penicillin.

38
Q

What class of amino acids are used in peptidoglycal and why? How are peptides linked?

A

D-amino acids are only used on peptidoglycan. L-amino acids are used in protein biosynthesis but not peptidoglycan. D-amino acid use may protect cell wall from attack by peptidases- if they are only used to attacking L-amino acids, they won’t be able to degrade D-amino acids.

Adjacent peptides are cross-linked.

39
Q

How are new peptidoglycan subunits integrated into the cell wall?

A

Subunits are made in the cell and transferred across membrane to the site where they will be integrated into the existing structure. Bonds in cell wall need to be broken to allow new subunits in- this is done by autolysins. Transglycosylase integrates new subunit in. Bactoprenol carries new subunit from cell and across the membrane.

40
Q

What is needed for successful binary fission?

A

Faithful replication and segregation. Without replication, the cell can’t survive.

41
Q

What are the processes involved in DNA replication?

What are ori and dif and how are they involved?

A

Initiation, elongation and termination. All three need to be accomplished.

ori  - origin of replication.
dif - A unique site on the bacterial
chromosome that is located
in the replication termination
region.
Ori and dif are usually opposite each other.
42
Q

What is required for inititaion of chromosome replication?

How does it work?

A

Requires origin of replication, DnaA boxes, ATP-bound DnaA.
Ori marked by DnaA boxes-non palidromic. Bind DnaA- essential for replication.
Unwinds DNA- allows replication machinery to bind to unwound DNA.
Highly conserved boxes.

43
Q

How does replication elongation occur?

A

Replication happens bilaterally.
Replisome ins involved- a complex molecular machine that carries out DNA replication. Has all the necessary proteins for replication.

44
Q

How is chromosome replication terminated?

A

Through the action of Ter sites.
Ter sites are polar- only have an effect in one direction.
About 23 bp long- non palindromic. 14 bp conserved sequence. About 10 Ter sites in terminator region.
Ter bind to DNA replication terminator sequences and prevent passage of replication forks.
Efficiency of this affected by the affinity of a particular protein for the terminator sequence.

45
Q

How does cytokinesis and septation work?

A

Through formation of ftsZ ring, which separates the replicated and segregated nucleoid through the help of other division proteins. Z ring contracts and creates septal wall. Cells are separate.

46
Q

What is ftsZ and why is it important?

A

FtsZ protein is most crucial part of bacterial division.
Very widely conserved.
Binds and hydrolyses GTP.
Self assembes into protofilaments that form into a thick Z ring.
Structural but not sequnce homolog to tubulin.
Structure of ring not know, but can be seen through cell biology techniques.
(MREB- like the cytoskeleton of bacteria. Homolog to actin.)

47
Q

Wat are the main inhibitors of FtsZ assembly and how do they work?

A

Two main inhibitors:
Nucleoid- ring can’t form over DNA.
Min proteins (MinC, MinD, MinE)- these are at the ends of the cell and inhibit assembly. As ftsZ tries to find a place to form, Mins prevent it from forming at ends by getting in the way. Min protein cycle with FtsZ at poles.

48
Q

How is the Z ring assembled?

A

Space opens up in middle- no DNA or Min proteins.
Mutations in Min system mean mini cells- waste of cell division.
Oscillation of Min protein from one pole to the other happens at a regular pace- can be timed. Don’t get mini cells, only get two cells with the right amount of chromosomes.

49
Q

How is the Z ring matured?

A

FtsZ not capable of constriction.
Lots of proteins pulled in to synthesise parts for division.
These proteins make up the divisosome, which is the cell division machinery.
Heirarchal system- proteins come in at different times to ensure septum forms properly.

50
Q

How does constriction of the Z ring work?

A

Coordinated constriction of Z ring means coordinated constriction of the membrane and cell wall. This created two cells.
(B.subtilis cells don’t separate).

51
Q

What happens to cells that don’t separate and ones that do?

A

May not separate after division- form an aggregate, keep progeny with them.
(All contain the potential to make both reporter fusions, but may switch these genes off.)
Cells that separate- autolysins separate bonds in peptidoglycan. Need to be careful- if too much wall is broken down, the cell could rupture.