Cell cycle Flashcards
What phases are considered as part of interphase?
Everything except cell division (M phase)
G1, S, G2 phases
*Interphase is much longer in time than M phase
In what phase does DNA replication occur?
S phase of the interphase
What are the different steps of mitosis?
- Prophase
- prometaphase
- metaphase
- anaphase
- Telophase
What happens during mitosis at the transition from metaphase to anaphase?
Abrupt change in biochemical state
The cell can pause in metaphase before this transition point, but one the point has been passed, the cell carries on to th end of mitosis and though cytokinesis into interphase
What is the difference between mitosis and cytokinesis?
Mitosis: Nuclear division
Cytokinesis: Cytoplasmic division of the cell at the end of mitosis
What are popular models of study for unicellular and multicellular organisms?
Unicellular: Fission Yeast and Budding Yeast
Multicellular: C. elegans and drosophila
How are the cell cycles of budding yeast and fission yeast different?
Fission yeast: same G1, S, G2, M phases, but during M phase, the nuclear enveloppe does not break.
Budding yeast: normal G1, S phases, but not nomal G2 phase (gradual transition from S → M phase) → microtubule based spindle begins to form inside the nucleus early in the cycle, during S phase. Cell divides by budding
Condensed mitotic chromosomes are readily visible in fission yeats, but less in budding yeast
What are the effects of temperature on the cell cycle?
At permissive (low) temperature, the cell divide normally, found in all phases of the cycle
At high restrictive temperatures → mutant gene product functions abnormally → cell cycle is stopped at the specific step that mutation affects
cdc mutant still continue to grow → abnormally large
non-cdc mutant eventually runs out
What is the effect of the cdc15 mutant on budding yeast cells?
They are stuck in anaphase → can see the large buds staying and not dividing
What is the process of growth of a frog oocyte?
- Oocyte grow without dividing (no DNA replication) for many months in mother’s ovary → matures into an egg (ready for fertilization)
- Fertilization
- Egg cleaves very rapidly (initially 1 division cycle/30min) → multicellular tadpole in 1-2 days
*No G1 and G2 phases which makes the process much faster - Cells get progressively smaller with each division, embryo remains same size
- Growth starts when tadpole begins feeding
Does the cell cycle absolutely have to be in a cellular environment to occur adequatly?
No, a cell-free mitotic cycle can be observed.
1. Activated frog eggs broken open by gentle centrifugation → separates the cytoplasm from other cell components
2. Undiluted cytoplasm is collected + sperm nuclei added to it + ATP → tube
3. Sperm nuclei decodes and goes through repeated cycles of DNA replication and mitosis
Conclusion: cell-cycle control system is operating in a cell-free cytoplasmic extract
How do mammalian cells look like in culture?
Most of the cells are spindle shaped, flat and attached
Some are round → going through mitosis
How can radioactivity be used to identify cell in the S phase in a sample?
- Expose the tissue for a short period to 3H-thymidine
- Visualize by autoradiography
- Silver grains (black dots) over a nucleus = cell incorporated 3H-thymidine into its DNA → was in S phase during labeling period
*Presence of an S-phase cell is evidence of cell proliferation occurring (can be in response to damage)
How can cell proliferation be identified using fluorescence?
Immunofluorescence micrograph of BrdU-labeled glial precursor cells in culture
- Cells that were exposed to BrdU for 4h which incroporates into the DNA, then where fixed,
- Take a slice and exposed to fluorescent anti-BrdU Ab (red)
- All cells are stained with blue fluorescent dye
All cells appear blue, if they were in S-phase during exposition to BrdU, the nucleus appears red also
How can we do analysis of DNA content with flow cytometry?
Analysed cells are stained with a dye that becomes fluorescent when it binds to DNA → amount of fluorescnce ~ amount of DNA in each cell.
Uses a laser to fluoresce every cell 1-by-1 and sort them depending on their fluorescence
3 categories:
- unreplicated complement of DNA (G1 phase) → x1 relative DNA amount
- G2 or M phase → x2 relative DNA amount
- S phase are in between the 2 peaks
Where would cells that are dead by apoptosis and cancer cells appear on a flow cytometry graph?
Dead cells would have no DNA content to bind to → would appear between 0-1 relative amount of DNA/cell
Cancer cells replicate very fast and can have more copies of chromosomes → could appear 3-4 relative amount of DNA/cell
What is the G2 checkpoint associated with?
Entry into the M phase → trigger of the mitosis machinery → assembly of the mitotic spindle
Cell checks if all the DNA has been replicated with no mutations
*When passing through a checkpoint, cell can’t come back
What is the G1 checkpoint associated with?
Cell checks if the envrionment is favorable of DNA replication → triggers DNA replication machinery
*When passing through a checkpoint, cell can’t come back
What would happen to a cell that has no checkpoints in its cycle?
- It would accumulate mutations because would divide (M phase) before they are all repaired (G2)
- It would divide too quickly → become a cancer cell
What is the metaphase checkpoint associated with?
Are all chromosomes attached to the spindle? → trigger anaphase and proceed to cytokinesis → complete cell division
*When passing through a checkpoint, cell can’t come back
Can a cell go through the cell cycle without its checkpoints?
Yes, checkpoints are breaks for the cell to not pass to the next phase, they are not required for entry in the next phase
What is the cdk? And its role in the cell cycle?
cdk = cyclin dependent kinase → needs to be phosphorylated by kinase for its activation, on threonine of the T loop
- cdk associates successively with different cyclins to trigger different events of the cycle
- cdk acivity usually terminated by cyclin degradation
- On single cdk for every phase, but different specific S-cyclins, M-cyclins, etc. → form S-cdk complex
*Same cdk for all the cycle, but activated by different cyclins specific to the phase
How many different cdk are there in budding yeast vs in vertebrates?
Budding yeast: Only Cdk1, several cyclin to make Cdk specific for each checkpoint
Vertebrate:
Different Cdks, all very similar
Different cyclins → very specific
How does cycling binding to Cdk → Cdk activation?
- Inactive state → without cyclin bound → active site is blocked by T-loop (region of the protein)
- Partial activation → caused by binding of cyclin which causes the T-loop to move out of the active site
- Fully active → phosphorylation of Cdk2 by CAK (Cdlk-activating kinase) at a threonine residue in the T-loop → changes the shape of the T-loop → improve the ability of the enzyme to bind its protein substrate → further activates the enzyme
*Active site fully exposed so can act and phosphorylate its substrates
What is the whole process of M-Cdk activation (with its positive feedback loop)?
- Cdk1 + M-cyclin = inactive M-Cdk → levels gradually rise
- Cdk inhibitory kinase (Wee1) x2 + Cdk-activating kinase CAK phosphorylate M-Cdk → inactive Cdk (because of its inhibitory phosphates)
- At end of G2: Cdc25 (phosphatase) takes inhibitory phosphates → active M-Cdk (a lot at the time since they had accumulated)
*Cdc25 has to be phosphorylated to be active
Positive feedback:
- Active M-Cdk further phosphorylates Cdc25
- Active M-Cdk inhibits Wee1
What is the role of CKI p27?
Active cyclin-Cdk complex → inactive p27-cyclin-Cdk
p27 binds to both cyclin and Cdk in a complex, distorting the active Cdk
Also inserts into ATP-binding site, further inhibiting the enxyme activity
Acts in checkpoints to inhibit the active cyclin-Cdk complex
*control of progression from G1 → S phases
How does M-cyclin trigger the mitotic machinery?
- M-Cyclin is upregulated → accumulates
- Binds to, and activates CDK → M-Cdk (kinase)
- M-Cdk (active kinase) will phosphorylate proteins responsible for mitosis → activate them
*M-cyclin confers specificity to the kinase (kinase is the same for all phases)
How does Cdk use ATP?
Cdk = Kinase which catalyses the tranfer of gamma P of ATP (→ADP) → phosphorylate substrates (Ser/Thr)
What is the role of SCF
SCF = Ub E3 ligase
*Controls proteolysis
(unphosphorylated CKI can NOT bind SCF → regulation)
1. Phosphrylation of CKI (p27) allows to be recognized by SCF
2. With E1 and E2, SCF poly-Ub CKI
3. Ubiquitinylated CKI then recognized and degraded by proteasome
What is the role of APC
*Control of proteolysis → specifically M-cyclin Ubiquitylation (activated in late mitsosis
- Inactive APC is activated by Cdc20
- M-Cdk (M-cyclin + Cdk) + active APC + E1 + E2 + Ub → poly-Ub chain
- Degredation of M-cyclin in proteasome
What did cell fusion experiments show about the cell cycle?
- Fuse S + G1 phases → S-phase for both nucleus
- Fuse S + G2 phases → G2 nucleus stays in G2, S-phase nucleus continues DNA replication (No going back)
- Fuse G1 + G2 phases → Nucleus stay in their respective phases showing that factors of S-phase that did drive G1 are gone