Cell Culture Techniques Flashcards

1
Q

Describe use of skin cell spray

A

Harvest stem cells for a severe burn
Stem cells sprayed onto burn site
Using cells spray gun device
Cell application heals burn

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2
Q

Describe Immuno-purification

A

Antibody-coated magnetic beads
Mixed with heterogeneous cells
Isolation of antigen-expressing cells

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3
Q

Describe use of fluorescence activated cell sorters (facs)

A

Collection process = sample is injected into a stream of sheath fluid that passes through the flow cell and laser intercepts

Stream carries cell through a vibrating nozzle

Disturbance in stream causes it to break into a droplet containing ideally one cell

An electrical charging ring is placed just at the point where the stream breaks into droplets

A charge is placed on the ring based immediately prior to fluorescence intensity being measured, and the opposite charge is trapped on the droplet as it breaks from the stream

The charged droplets then fall through an electrostatic deflection system that diverts droplets into containers based upon their charge

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4
Q

Describe the return of the stream to neutral when using a FACS

A

In some systems, the charge is applied directly to the stream, and the droplet breaking off retains charge of the same sign as the stream. The stream is then returned to neutral after the droplet breaks off

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5
Q

Describe cell isolation from solid tissues

A
Mechanical and enzymatic 
disruption using:
dispase
trypsin
collagenase

Then magnetic Immuno-purification

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6
Q

Discuss positives/negatives of primary cells (derived directly from tissues)

A

+ve:
Unmodified
Good for personalised medicine

-ve:
Aberrant expression of some genes
Variable contamination
Limited 
Short life-span
Inter patient variation
Difficult molecular manipulation
Phenotypic instability
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7
Q

Describe the methods of cells derived from primary cultures

A

Spontaneously, from prolonged culture, multiple ill-defined mutationstransformed phenotype

Through genetic manipulation
Transformation of healthy primary cells

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8
Q

What do we target to generate cell lines

A
  • To generate cell lines we target processes that regulate cellular growth and ageing
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9
Q

Effect on telomeres as cells divide

A
  • As cells divide over time, telomeres shorten, and eventually cell division stops → Apoptosis (p53,pRb)
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10
Q

How can we inhibit the function of tumour suppressor proteins, or introduce telomerase in order to alter a cell’s capability for its finite number of divisions?

A

Answer: taking advantage of viral ‘oncoproteins’

Virus = Simian Virus-40 
(SV40) 
Viral oncoprotein = Large T antigen
Small t antigen
Cellular targets = p53 + pRb

Virus = Human Papilloma Virus (HPV)
Viral oncoprotein = E6 + E7
Cellular targets = p53 + pRb

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11
Q

Compare the use of SV40’s T-antigen and E6/E7

A

V40’s T-antigen interacts with p53 and pRb. This can cause increased growth without loss of function of these proteins

  • E6 targets p53 for degradation, and E7 binds to pRb inactivating it

Cell lines made using E6/ E7 oncoproteins are believed to maintain a differentiated phenotype

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12
Q

Describe what is required for immortalisation of telomeres

A
  • The telomerase gene can also be introduced into a target primary cell.
  • Some cells need both introduction of the telomerase gene and inactivation of the pRb/p53 for “immortalisation”
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13
Q

Effect of E6/E7 + telomerase transformations

A

🡪 E6/ E7 and telomerase transformations are believed to result in cell lines with a differentiated phenotype

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14
Q

List positives of cell lines

A
Good growth characteristics. Standard media
Phenotypic stability
Defined population
Molecular manipulation readily achieved 
Good reproducibility
Good model for basic science
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15
Q

Conditions and requirements for growth in culture

A

Handled under aseptic conditions

Grown on tissue culture treated plastic flasks/dishes

Maintained in a warm (37°C) humidified atmosphere (5% CO2)

In ideal supplemented medium that needs to be replaced by fresh one every 2/3 days* (*Phenol red is a medium pH indicator)

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16
Q

Adherent vs suspension cells - definition

A

Adherent first then suspension

Cells that grow attached to a solid surface

Cells that grow suspended (floating) in a liquid medium

17
Q

Adherent vs suspension cells - Anchorage dependency

A

Adherent first then suspension

Anchorage-dependent
Anchorage-independent

18
Q

Adherent vs suspension cells - Agitation

A

Adherent first then suspension

Not required
Continuous agitation is required

19
Q

Adherent vs suspension cells - Trypsinization

A

Adherent first then suspension

Required
Not required

20
Q

Adherent vs suspension cells - Tissue culture treated vessels required?

A

Adherent first then suspension

Required
Not required

21
Q

Adherent vs suspension cells - yield

A

Adherent first then suspension

Low
High

22
Q

Adherent vs suspension cells - Growth limited by what

A

Adherent first then suspension

By the surface area
By the concentration of cells in the medium

23
Q

Adherent vs suspension cells - Types of cells

A

Adherent first then suspension

Most types of cell lines and primary cultures
Some non-adhesive cell lines such as hematopoietic

24
Q

List the microbial contaminations of cell cultures

A

a) Bacteria (pH change, cloudiness/turbidity, precipitation, stink)
b) Yeast (cloudiness, pH change)
c) Fungus (spores furry growths, pH change)
d) Mycoplasma (often covert, poor cell adherent, reduced cell growth)
e) Virus (sometimes cytopathic)

25
Q

List the Cell lines cross-contamination

of cell cultures

A
  • Poor tissue culture technique
  • Culture of multiple cell lines at one time
  • Accidental mixing of cell lines
26
Q

List the negatives of cell lines

A
Often lose differentiated function 
Cell-substrate interactions dominate
Does not mimic real tumour conditions
Lacks cells heterogeneity
Phenotype needs to be validated
27
Q

Organoid vs spheroid 3D culture

A

Organoid first then spheroid

Derived from stem cells vs cell line monoculture

Multiple cell lineages vs represent single/partial tissue components

Recapitulate organ physiological parameters vs transiently resemble cell organization

Long term culture vs difficult to maintain LT

28
Q

Patient-derived organoids allow what

A
  • Patient-derived organoids allow the study of cancer drug resistance
29
Q

Organoids advantages

A

Advantages:

- Gene expression as in vivo (87% phenotype and genotype similarity)
- Cells-cell communication re-established
- Cells are orientated in same ways as tissue
- Ideal platform for individualized therapeutic screening
30
Q

Organoids disadvantages

A

Limitations:

- Limited amount of tissue in some cases (e.g. prostate)
- Organoids in the same culture are heterogeneous 
- Absence of immune cells in culture system
- Unable to mimic in vivo growth factor/signalling gradients
31
Q

Define transfection

A

Transfection is the process by which foreign DNA is deliberately introduced into a eukaryotic cell through non-viral methods including both chemical and physical methods in the lab.
e.g. a plasmid, a CRISPR/Cas9 complex

32
Q

Describe Lipofection

A

Using cationic lipid transfection systems

Lipoplexes positively charged

Membrane is negatively charged

Unilamellar liposomal structure w/plasmid DNA to form a net positive charge

  1. Interaction with the cellb membrane
  2. Taken up by endocytosis
  3. Release from the endosome
  4. Transport to the nucleus
  5. Entry to the nucleus inefficient and may need mitosis
33
Q

Li[psomes - use

A

Liposomes as potential drug carriers for drug delivery

34
Q

Electroporation - describe

A

Use plates of a capacitor
Surrounding cell + plasmid DNA
High electric field forms pores which then reseal

35
Q

List characteristics of nucleofection

A
  • Combination of electroporation and lipofection
  • Increased efficiency particularly of non-dividing cells
  • Technology is protected under patent
  • Different solution and protocols are used for each cell type
36
Q

Viral infection/transduction - list characteristics

A
  • Exploits the mechanism of viral infection.
  • High transfection efficiency.
  • Retrovirus, Adenovirus,
    but most commonly Lentivirus
    are used.
  • Target cells need to express
    the viral receptor to work.
  • There are safety aspects to
    Consider.