CBG Lecture 35: Secretory Pathway:Protein Translocation Flashcards
how does epstein barr virus replicate
in an episome
how does EBV survive in a host cell
Survives in an infected cell by interfering with the T-cell adhesion response
in what can EBV be reactivated in
Can by reactivated in cancers
what do TRIM5 proteins do
prevent uncoating of viral capsid proteins
WHAT IS the signal hypothesis
signal sequences are typically 15-60aa, oftern @N-terminus, often cleaved by signal peptidases
GUNTER BLOBEL
how long are signals
15-60 aa
where does synthesis of all proteins begin
in cytoplasm
whatis the signal for ER translocation
N-terminal positive…hydrophobic….polar
what is the -3, -1 rule
residues @ position -3,-1 relative to cleavage site ,ust be small and neutral (lysine,arg) for cleavage to occur correctly
what is the SRP
signal recognition particle
what is Sec
a translocon that is an evolnary conserved passive pore
found on ER membrane
name an evolnary conserved passive pore
Sec translocon
which Sec in mammals and euks
Sec61
which Sec in proks and archaea
SecY
discuss structure of Sec translocon
heteroetrimeric complex
Sec61alpha, beta, gamma
which monomers of Sec translocon are essential
Sec61 alpha and Sec61beta
how is Sec61 a passive pore
associating partners provide the driving force
no ATP
depending on partner there are different ways channel could work
what are the Sec modes of action
Cotranslational -SecY
Posttranslational eukaryotic - ratcheting
Postranslational bacterial - pushing
what Sec is found exclusively in bacteria
SecA
which type of Sec transport requires addditional enerygy
brownian ratchet - eukaryotes Sec61
bacterial pushing - SecA
where does energy for cotranslational secretion in Sec come from
GTP -> GDP
describe cotranslational Sec61 mode of action
protein still being synthesized so pp only has one way to go - energy from GTP hydrolysis
when does postranslational translation happen
after protein synthesized - additional energy is necessary - ATP->ADP
discuss cotranslational translocatoin
most general mode, most membrane protein translocation
partners include SRP and SRP receptors