Case Unit 1: Cholera Flashcards

1
Q

What is a case report?

A
First line of evidence
Detailed story of a unique or unexplained case 
Presentation of new information 
Observational 
Lowest level evidence
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2
Q

Advantages of a case report

A

Good way to detail new cases
Useful for identifying new diseases or new drug side effects
Can be used to generate research hypotheses

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3
Q

Disadvantages of a case report

A

May focus too strongly on misleading/unimportant aspects

The features of this specific case may not be applicable to others with the disease

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4
Q

What is a case-control study?

A

Identify a group of people with the disease and match them to a group of people without the disease
Look back (retrospectively) to try and identify exposure to risk factors in the case group
Observational

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5
Q

Advantages of a case-control study?

A

The disease has already occurred so no waiting around
Good for studying rare diseases as all the known cases can be included
Multiple risk factors can be examined at once

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6
Q

Disadvantages of a case-control study?

A

May be difficult to find a closely matched control group for the case group
Relies on accurate memory, there may be recall bias

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7
Q

What is a cohort study?

A

One (or more) cohorts are followed (prospectively) and ‘measured’ at intervals to track disease development/if they are developing it at all
Different cohorts may have one varying risk factor between them, but are matched otherwise to eliminate confounding variables

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8
Q

Advantages of a cohort study

A

Not as expensive as the conditions are ‘natural’ i.e. not controlled like in a randomised-control trial

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9
Q

Disadvantages of a cohort study

A

May take a long time for the disease of interest to develop
People may decide to drop out
The cohorts are not randomised so there may be other unidentified confounding variables influecing the different outcomes of the cohorts

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10
Q

What is a randomised control trial?

A

Participants randomised into control group and intervention group
Intervention group given treatment
Dependent variable measured from both groups
Statistical analysis used to determine difference between groups

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11
Q

Advantages of randomised control trial

A

Groups are randomised to eliminate confounding variables and population bias
Can be placebo-controlled
The researchers and participants can be blinded

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12
Q

Disadvantages of randomised control trial

A

May be bias in the type of people who volunteer to participate
Expensive to run and time-consuming

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13
Q

What are Koch’s Postulates?

A

The disease-causing organism must be present in those with the disease and not in those without it
The organism should be isolated from a diseased person and grown in pure culture
The cultured organism should be inserted into a healthy person and cause disease to develop
The organism should be re-isolated and shown to be identical to the original organism

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14
Q

What is a paradigm shift?

A

A shift in the way society views a certain topic in terms of approach and assumptions

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15
Q

What are the steps of a paradigm shift?

A

New evidence is presented that contradicts the current theory
Current theory undergoes crisis
New paradigm is established

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16
Q

What is PCR used for?

A

Amplifying a target sequence of DNA
Shows if the target sequence is present or not
Creates enough product to be used in gel electrophoresis

17
Q

Advantages of PCR

A

Easy, cheap, reliable

18
Q

5 ‘ingredients’ of a PCR reaction

A
Template DNA
Buffer solution
dNTPs
Heat resistant polymerase (usually Taq polymerase)
RNA Primers
19
Q

Steps of PCR and temperatures

A

Denaturation (90 degrees)
Annealing (60 degree)
Elongation (72 degrees)

20
Q

What is qPCR?

A

Quantitative PCR/Real time PCR

21
Q

What is qPCR used for?

A

Measuring the amount of DNA in a sample

e.g. for testing how much viral DNA is in a sample

22
Q

What additional element is included in a qPCR reaction?

A

A fluorescence reporter

23
Q

Steps of qPCR to determine level of viral RNA in a patient sample

A

Convert viral ssRNA into dsDNA using reverse transcriptase
Carry out PCR as normal with fluoresence reporter
Record fluorescence after each cycle
Plot fluorescence on graph

24
Q

How to interpret results of qPCR

A

Number of cycles before fluorescence first becomes visible = CT value
2^difference in CT values between samples = difference in amount of viral RNA in each sample

25
Q

What is RT-PCR used for?

A

Basically just PCR used on RNA, so the RNA first has to be converted to cDNA using reverse transcriptase
Can be used to detect mRNA to detect gene expression
Or detect viral RNA in a sample

26
Q

What are the steps of RT-PCR?

A

RNA/mRNA isolated from cell
RNA converted into complementary DNA (cDNA) using reverse transcriptase
cDNA amplified using PCR
Use gel electrophoresis to see if certain RNA is present