Cancer Biology Flashcards
What is cancer?
An abnormal growth of cells in an uncontrolled way that can spread or metastasise into other tissues
What is a benign tumour?
Abnormal growth that are no longer under normal regulation
What is a malignant tumour?
Poorly differentiated cells, growing in a rapid, disorganised manner and can invade surround tissue and become metastatic, initiating the growth of similar tumours in distant organs
What are the different classes of cancer based on cell origin?
Carcinomas
Sarcomas
Lymphomas
Leukaemias
Describe carcinomas:
Most common (85%)
Arise from cells that cover external and internal (epithelial) body surfaces
Lung, breast and colon are the most frequent and includes glandular epithelial tissue adenocarcinoma *+(malignant stage)
Describe sarcomas:
Originate from cells found in the supporting tissue of the body (mesenchymal layer) e.g bone, cartilage, fat, connective tissue and muscle
Highly malignant e.g:
-liposarcoma (fat cells)
-osteosarcoma (bone)
-fibrosarcoma (fibrous connective tissue)
Describe lymphomas:
Make up 3% with leukaemia
Arise in the lymph nodes and tissue of the body immune system (B,T,NK cells) the can spread to the intestine, spinal cord, bone or brain
Describe leukaemias:
Cancers of the immature white blood cells that proliferate in the bone marrow and accumulate in the blood stream
What are the stages of cancer based on?
Size of tumour
Site of primary tumour
How far it has invaded into local tissues and structures
Whether it has spread to regional lymph nodes
Whether it has metastaized to other regions of the body
How is cancer graded?
Based on differences in microscopic cellular appearance
Doctors assign a numerical ‘grade’ to most cancers
A low number (I or II) refers to cancer with fewer cell abnormalities than those with higher numbers (III or IV)
What is tumour progression?
Normal cells evolve into cancer cells through a process called tumour progression
It is driven by a series of random mutations and epigenetic alteration (changes in DNA methylation) of DNA that affects the genes controlling proliferation and survival
This process takes place at several places throughout the human body and advances as we age
Name three ways in how DNA damage/ mutations can occur:
Mistakes in DNA replication
Nucloetides within DNA molecules undergo chemical changes spontaneously
Effect of mutagenic agents
Describe how mistakes in DNA replication can cause DNA mutations:
Misincorporation of deoxynucleotides during replication- incorrect bases assigned
Describe how chemically changed nucleotides cause DNA mutations:
Alter the base sequences of DNA
Describe how mutagenic agents cause DNA mutations:
Molecules generated endogenously by normal cell metabolism (Reactive Oxygen Species- ROS)
Mutagenic agents:
-physical agents (X-rays, UV rays)
-chemical agents (vinyl chloride, nitrosamines)
Describe how an incorrect base can have an effect on DNA formation:
Removal of altered bases affecting 3’-5’ exonuclease activity
Proof reading of incorrectly incorporated bases
Describe how a missing base can have an effect on DNA formation:
Removal of altered bases by DNA glycosylases
Removal of purines by acid or spontaneously
Describe an example of how a 3’ deoxyribose fragments are formed and cause DNA mutations:
By free radicals leading to strand breaks
Describe an example of how a bulge due to deletion or insertion of nucleotides are formed and cause DNA mutations:
Intercalculating agents that cause addition or loss of a nucleotide during recombinant replication
Describe how a single or double stand of DNA breaks:
By ionising radiation or chemical agents
Describe how linked pyrimidines are formed to cause a DNA lesion:
From UV radiation
Describe how cross linked strands are formed to cause a DNA lesion:
Covalent linkage of two strands by alkylating agents
Which viruses can cause cancer?
Human herpes virus, HPV, EBV, HBV
How are smoking and viruses linked to cancer?
Viruses are important risk factors for developing cancer after smoking
How do viruses cause cancer?
The viral genome can persist in the infected cells as an episome (circular DNA) and promote the expression of proteins that promote proliferation or that inhibit tumour suppressor genes
Describe how RNA viruses can enter the cell for carcinogenesis:
Reterotranscribed into DNA and incorporated into the host genome (provirus) and allows it to replicate
Describe two ways how RNA viruses cause carcinogenesis:
- Providing a gene that alters growth, the RNA viruses can contain an extra gene additional to the sequence needed for viral replication
- Insertional mutagenesis, the virus integrates into the host genome close to a host gene that regulates growth (e.g GF) and upregulates its expression
How do viruses cause direct carcinogenesis?
Direct-acting carcinogenic agents are generally found in a monoclonal form within the tumour cells, these agents help to keep the tumour phenotype
Viral genomes can form episomes (herpes), or integrate into the host genomic DNA (EBV, reteroviruses) so a viral oncogene expression is switched on all the time
After infecting the target cells tumour viruses are persistently maintained as genetic elements
How do viruses cause indirect carcinogenesis e.g HBV/HCV?
The virus is acting from outside the cell the will form the tumour
Chronic inflammation produced by persistent infection associated with any of these viruses is a major risk to develop hepatocellular carcinoma as it releases chemokines, they recruit inflammatory cells for many years so lots of ROS
Free radicals can cause DNA damage and mutations and oxidative stress that persistently damages local tissue
How do viruses cause indirect carcinogenesis e.g HIV?
Produces immunosuppression that reduces or eliminates anti-tumour (CD8) immune surveillance mechanisms
Typical of HIV, patients with non controlled infection and low T cell counts frequently develop lymphomas associated with EBV or KSV infecetion
Can one mutation cause cancer?
No, many mutations are required, a multistep process
Around 3-20 mutations
What is dysplasia?
Increase in growth of immature cells
Abnormal and variable appearance
Cell to cell interactions broken down
What is metaplasia?
One cell type changes into another
What causes neoplasia?
Neoplasia= cancer
Both dysplasia and metaplasia
What are the phases in carcinogenesis?
Initiation
Promotion
Progression
Metastasis
What occurs in the cell cycle if there are no growth factors present?
Cells go into resting (G0)
Name four growth factors and which receptor they activate:
Epidermal GF, Transforming GF a- activates EGFR
Hepatocyte growth factor- activates receptor c-met
Fibroblast GF
Which family does EGFR belong to?
Belongs to a family of erbB2 receptors
Describe EGFR signalling:
In the presence of a ligand, the EGFR comes together and form homodimers (EGFR) or heterodimers (HER1,2,3)
The receptors are phosphorylated in the intracellular tyrosine kinase domain
Specific adaptor proteins (Shc,Grb2,SOS) permit Ras/Raf/MAPK and PI3K pathway to be activated causing activation of cell growth
What is the consequence of a ligand binding to a EGFR?
From ligand binding cSrc and FAK signalling pathway promotes cell adhesion and invasion
From ligand binding, EGFR can undergo receptor endocytosis which acts as a transcription factor by being transported into nucleus by a protein called importin, which acts as a TF for cyclin D1 up regulation or as a co-regulator of other gene transactivators
Can undergo endocytosis and follow two possible routes:
-lysosomal degradation
-importin mediated nuclear translocation
What are proto-oncogenes?
Genes that regulate normal cell growth
These are genes at any point along the cell signalling pathway i.e Ras, Raf, ERK, EGFR, tyrosine kinase
Only progression through the cell cycle when ligand is present
What is the Ras proto-oncogene?
The product of the rasproto-oncogene are Ras proteins
Small G proteins
Involved in GTPase reactions cycles
Relay a GF signal from a GF receptor on the cell membrane to a cascade of tyrosine kinases
Describe a mutation in the Ras protoco-oncogene cause cancer?
Point mutation G to T changes glycine to valine
Just one single a.a substitution affected the function of Ras to convert it from a proto-oncogene to an oncogene
Mutations in the Ras gene are found in 30% of human cancers
How are proto-oncogenes and oncogenes related?
A mutated proto-oncogene is an oncogene
Describe the Weinberg’s experiment:
Immortalised cancer cells in mouse won’t cause a tumour
Took tumour from pt with bladder cancer and isolated DNA, then transfected DNA into cells
In microscope some cells got a transformed colony
Injected these into the mouse and found it caused a tumour
Isolated the human genes from the mouse and confirmed the Ras mutation
What is the consequence of the Ras mutation?
Ras can signal on its own if its mutated even if there is no ligand
The G protein is stuck on and there is a constant active signal so constantly switched on as Ras is a downstream GF of the signalling pathway
Name types of mutations that can occur and where are the possible sites of mutations in proto-oncogenes?
Gene amplification- too many copies of a gene so too much of a product
Gene rearrangements- promotor of gene in wrong place so normally a weakly expressed gene can be expressed at high levels
Large structural deletions
Subtle mutations- single nucleotide change
Name common mutations of signal transduction and which cancer does this occur in?
EGFR over expression; pancreatic, colorectal, lung
Ras mutation; pancreatic, thyroid, colon
B-Raf mutation; melanoma
What is an example of a gene that can cause breast cancer and a treatment:
HER2 gene is amplified and over expressed in 25% of breast cancers
Trastuzumab- humanised MC antibody, blocks HER2 activity
Describe the treatment and how it works for non small cell lung cancer:
Erlotinib and Gefitinib
Inhibit the tyrosine kinase portion of EGFR so prevents the receptor mediated signalling pathway from being activated
Describe the treatment and how it works for colorectal cancer:
Cetuximab and Panitumumab
MC antibodies that block EGFR activity
What causes Chronic Myeloid Leukaemia (CML)?
Philadelphia chromosome abnormality- as an activated Bcr-Abl caused it
BCR= break point cluster region
Abl= protein tyrosine kinase involved in cell differentiation, adhesion and growth
Normally chromosome 9 has the ABL gene and chromosome 22 has the BCR gene
These chromosomes break as during the translocation ABL loses its regulatory domain, the fusion emits contact growth promoting signals
This fusion protein causes CML
Describe the mechanism of action of BCR-ABL in CML:
Normally GFs activate RTKs leading to activation of Ras and PI3K/AKT
Phosphorylation of Tyr177 within the BCR part of BCR-ABL leads to activation of these pathways by interacting with the SH2 domains in GRB2 leading to PI3K downstream signalling pathways
BRCABL can produce more IL3 and GCSF so activates JAK and STAT 5 signalling pathway which causes more cell proliferation
What drug is used to help treat CML and how?
Imatinib mesylate binds to an intracellular pocket located within tyrosine kinases (between BCR-ABL and GRB2), inhibiting ATP and preventing phosphorylation and activation of GFR and downstream signalling pathways
What is the G1 checkpoint in the cell cycle?
Is the environment favourable
What is the G2 checkpoint in the cell cycle?
Is all the DNA replicated and all the damage repaired
What is the mitosis checkpoint?
Are all the chromosomes properly attached to the mitotic spindle
Name the 3 main tumour suppressor genes (TSG):
Cyclin/ CDKs and CKIs
Retinoblastoma protein
p53
How is the Rb protein involved in the cell cycle?
Acts as a brake on the cell cycle, keeping the cell in the G1 phase
Inhibits genes necessary for progression into S phase
Phosphorylation of Rb releases brake
What is the main occurrence when there is a mutation in Rb in cancer?
Mutation in Rb (inactivated) causing a constitutive activation of the cell cycle