Bugs And Drugs Flashcards
These bacterial toxins are encoded by a lysogenic phage:
Group A strep erythrogenic toxin (think scarlet fever), Botulinum toxin, Cholera toxin, Diphtheria toxin, Shiga toxin
Morphology of Moraxella catarrhalis
GN cocci
Respiratory GNRs
Bordetella pertussis; Burkholderia; Haemophilus (HiB or NTHi); Legionella (Legionella doesn’t gram stain super well but can be visualized with silver stain)
Why don’t Treponema pallidum and Leptospira gram stain well?
They are too thin to be visualized
Morphology of common bacterial causes of diarrhea
Campylobacter, Shigella, Salmonella, E.coli… These are GNRs
Morphology of a bacterial species associated with food poisoning from cantaloupe and cottage cheese
Listeria - GPR
These antibiotics are generally ineffective against anaerobes because they require O2 to enter into the bacterial cell walls:
Aminoglycosides: gentamicin, tobramycin
GP rods with spores
Clostridium
Asplenics are at particular risk of infection from these pathogens:
Encapsulated bacteria: the capsules serve as an anti phagocytes virulence factor. Asplenics have decreased ability to opsonize bacteria, leading to a decreased ability to clear these infections. Major ones are S.pneumoniae, HiB, N.meningitidis (these three are ones for which we have vaccines), Klebsiella pneumoniae, Salmonella, E.coli, Group B strep, Pseudomonas.
Pathogen that causes watery diarrhea in developing countries and pathogen associated with shellfish and shark bites: morphology
Vibrio species (V.cholera; V.vulnificans): comma-shaped GNRs
This bacteria produces biofilms and is implicated in otitis media quite frequently.
NTHi
Morphology of Neisseria (N.meningitides, N.gonorrheae)
GN cocci
Define transformation.
Ability of bacteria to take up free DNA (often generated by cell lysis). S.pneumo, HiB, and Neisseria can do this.
These bacteria don’t have cell walls, so they don’t gram stain
Mycoplasma, Ureaplasma
Mechanism for vaccines against encapsulated bacteria
Polysaccharide capsule conjugated to carrier protein, which enhances immunogenicity by promoting T cell activation, leading to class-switching on B cells. Examples are the PCV (pneumococcal conjugate vaccine), HiB vaccine, and meningococcal vaccine.
Why don’t these bugs gram stain well? Legionella, Rickettsia, Chlamydia, Bartonella, Ehrlichia, Anaplasma
Primarily intracellular
These bacterial toxins cause toxic shock syndrome.
Super antigens from Staph aureus (Toxic shock syndrome toxin - TSST-1) and Strep pyogenes (Exotoxin A). They bind to MHC class II molecules and to TCRs outside of the usual binding site, causing overwhelming release of pro-inflammatory cytokines.
Important aerobic bacteria
Nocardia, Pseudomonas aeruginosa, Mycobacterium tuberculosis
This bacteria produces biofilms and is frequently implicated in infective endocarditis following dental procedures.
Viridans strep (strep mutans)
This bacteria produces a blue-green pigment.
Pseudomonas aeruginosa
This bacteria produces biofilms and is frequently implicated in catheter and prosthetic device infection.
Staph epidermidis
Define specialized transduction.
Lysogenic phage infects a bacterium and incorporates its DNA into the bacterial chromosome. When the viral DNA is excised, parts of the surrounding bacterial DNA are taken with it as well, and those can be transferred to another bacterium.
Catalase-negative and/or SOD-negative anaerobes, which are generally foul-smelling due to short-chain fatty acid production
Clostridium, Bacteroides, Fusobacterium, Actinomyces
Obligate intracellular bacteria
Rickettsia, Chlamydia, Coxiella
Key spirochetes
Borrelia, Leptospira, Treponema pallidum
This bacteria produces biofilms and is frequently a major culprit in respiratory colonization in cystic fibrosis patients, as well as in contact-lens-associated keratitis.
Pseudomonas aeruginosa
What bacterial species expresses protein A, and what does protein A do?
Staph aureus. Protein A binds the Fc region of IgG, preventing opsonization and phagocytosis.
These bacterial exotoxins cause watery diarrhea: what are they, and how do they work?
ETEC heat-labile and heat-stabile toxins; Vibrio cholerae Cholera toxin. These over-activate adenylate cyclase, increasing cAMP, leading to increased Cl- secretion in the gut, causing H2O efflux and watery diarrhea. Heat-stabile toxin over-activates guanylate cyclase, increasing cGMP, and leading to decreased resorption of NaCl and H2O, also causing watery diarrhea.
Why don’t Mycoplasma (TB, etc) stain well on gram stain?
No cell wall
Define conjugation.
F+ plasmid contains the genes required for a sex pilus and conjugation. It will cause a sex pilus to form, which contacts the F- bacterium, leading to transfer of plasmid DNA across that bridge.
GP cocci, aerobic, catalase-positive, coagulase-positive
Staph aureus
Treatment for intertrigo
clotrimazole or nystatin, can also use barrier paste like zinc oxide
What bacterial species expresses M protein, and how does that help in pathogenesis?
Group A strep (S.pyogenes): M protein is an antiphagocytic factor with similar epitopes to various human proteins, which is what causes the autoimmune response that occurs in rheumatic fever.
Fungus that stains well with India ink
Cryptococcus neoformans
Diagnostic technique for scabies infection
Mineral oil prep: look for mites, poop, eggs. Presence of any is diagnostic, although you may treat empirically with a high index of suspicion.
Spore-forming bacteria
Bacillus, Clostridium
GP anaerobic branching filaments, not acid-fast
Actinomyces
Skin pain and erythema starting and the head and going across the body, with flaccid bullae that desquamate in sheets
Staph Scalded Skin Syndrome - due to toxin. Treat inpatient with IV antibiotics and supportive care
A bacterial endotoxin leads to tissue factor activation. What complication can occur?
This can activate the coagulation cascade, leading to DIC.
GP cocci in chains, beta-hemolytic
Group B strep agalactiae, Group A strep pyogenes
This bacterial exotoxin is clinically important because antibodies against it can be used to diagnose rheumatic fever. What is it, and how does it work?
Streptolysin O, released by Strep pyogenes. It degrades cell membranes, leading to hemolysis.
This bacterial exotoxin causes hemolytic-uremic syndrome.
Shiga toxin (Shigella) or Shiga-like toxin (EHEC). It inactivates 60S ribosome by removing adenine from rRNA. This leads to bloody diarrhea (febrile in Shigella, non-febrile in EHEC) and can cause HUS due to enhanced cytokine release.
Define transposition.
Segments of DNA can jump between plasmids and chromosomes. These are called transposons. If they jump from a chromosome to a plasmid, they can become incorporated into other bacterial genomes. This is what led to the development of vancomycin-resistant S.aureus after a plasmid containing a vancomycin resistance transposon was transferred from VRE.
This exotoxin is a phospholipase that causes tissue degradation. What is it and what does it lead to?
Clostridium perfringens alpha toxin, causes gas gangrene.
What are the main effects of bacterial endotoxins?
Endotoxins are LPS on the outer membrane of gram-negative bacteria. Their three main effects are macrophage activation via TLR-4, complement activation, and tissue factor activation.
Treatment of pityriasis versicolor
Give oral fluconazole, exercise till sweating, then rinse off after 4 hours, and repeat in a week
Secondary staph aureus infection in a pre-existing skin lesion
Impetiginized
GP aerobic bacillus: what could it be?
Listeria, Bacillus, Corynebacterium
This bacterial toxin causes flaccid paralysis and “floppy baby” - what is it, and how does it work?
Botulinum toxin, from Clostridium botulinum: a protease that cleaves SNARE proteins, preventing release of stimulatory neurotransmitters (ACh) at the neuromuscular junction, leading to flaccid paralysis.
No stimulation -> no action potentials -> floppy.
A bacterial endotoxin produces a response that includes complement activation. What physiological problems occur, and why?
Histamine release causing hypotension and edema from C3A and C5a release, as well as neutrophil chemotaxis.
GP anaerobic bacillus: what could it be?
Clostridium
Bugs that stain well on Giemsa stain
Chlamydia, Borrelia, Rickettsia, Trypanosomes, Plasmodium
Fever, rash, vomiting, desquamation, end-organ failure with elevated LFTs, elevated bilirubin, associated with prolonged tampon use
Tampon-related S.aureus toxic shock syndrome. REMOVE THE TAMPON - source control! Very treatable in those cases.
GP cocci, aerobic, catalase-positive, coagulase negative
S.epidermidis (sensitive to novobiocin), S.saprophyticus (not sensitive to novobiocin), other Staph species
A bacterial endotoxin leads to macrophage activation. What cytokines are released, and what signs/symptoms occur as a result?
IL-1 and IL-6 lead to fever. TNF-alpha leads to fever and hypotension. Nitric oxide leads to vasodilation, leading to hypotension.
Second most common cause of uncomplicated UTI
Staph saprophyticus
GP aerobic branching filaments, acid-fast
Nocardia
Non-bloody diarrhea and vomiting 2-6 hours after eating contaminated food
Most likely due to preformed toxin from S.aureus, a heat-stable enterotoxin
GP cocci in chains, alpha-hemolytic
Viridans strep (no capsule); S.pneumoniae (encapsulated)
Coral red fluorescence on Woods lamp in an area of the skin subject to maceration
Erythrasma - Cornyebacterium minutissimum
Lesions in young kids that are round erosions with scale
Bullous impetigo - treat with oral ABX
Patients with chronic granulomatous disease have recurrent infections with certain catalase+ organisms: which ones, and why?
Nocardia, Pseudomonas, Listeria, Aspergillus, Candida, E.coli, Staph, H. Pylori… This is because in CGD, patients’ disease is due to NADPH oxidase deficiency, and so they have a decreased neutrophil response to catalase-positive organisms.
Erythrasma treatment
Anti-inflammatory topical ABX or antifungals
Pathogen most commonly implicated in abscess formation
Staph aureus
Infection causing a raised erythematous plaque with sharply demarcated border, sometimes on the face, that occurs with fever, chills, and malaise
Erysipelas, caused by S.pyogenes. Treat with oral ABX.
GP cocci in chains, no hemolysis
S.bovis, enterococcus
Lesions with honey-colored crusting
Non-bullous impetigo, most commonly due to S.aureus
Define generalized transduction.
Lytic phage infects bacterium, and when the bacterium lyses, parts of its DNA are packaged in phage capsids, leading to transfer of those genes to another bacterium when it is infected by the phage.
Infections caused by dermatophytes
Tinea capitis (scalp), cruris (groin, spares the scrotum), pedis (feet), corporis (body)
Which generation of cephalosporins is best for treating methicillin-susceptible staph aureus?
1st gen (cefazolin, Cephalexin) or 2nd gen cefuroxime.
Tinea workup on KOH prep
Branching septate hyphae
Topical treatment for tinea infections
Clotrimazole or terbinafine
This bacterial toxin causes spastic paralysis and “lockjaw” - what is it, and how does it work?
Tetanospasmin, from Clostridium tetani. Protease that cleaves SNARE proteins. Prevents release of inhibitory neurotransmitters (GABA, glycine) from cells in spinal cord, leading to tetany.
No inhibition -> tons of action potentials -> tetany.
Rash in groin, under breasts, skin folds, involving scrotum, with satellite pustules and papules
Intertrigo - caused by Candida
Serpiginous burrows, very itchy, often in web spaces, wrist, penis, scrotum, breast
Scabies
First-line therapy for MRSA
Vancomycin
KOH prep of Malassezia furfur
Spaghetti and meatballs - hyphae and spores
First-line therapy for streptococci
Penicillins - Penicillin G (IV) or V (oral), aminopenicillins
Patient presents with pharyngitis and fever. A gram stain from a swab of the pharynx reveals gram-positive cocci in chains. The patient has, in the past, developed urticaria after taking amoxicillin. What is the best choice of treatment for this patient?
Allergic to penicillins, so this patient should be given a macrolide, which is second-line therapy for streptococci (this patient has an infection with S.pyogenes). Macrolides include erythromycin, azithromycin, clarithromycin.