BS2013 Flashcards
Name the four different classes of receptors
Ligand-gated ion channels
RTKs
GPCRs
Nuclear receptors
What is an agonist?
A drug that binds to a receptor, evoking a response
How does an agonist work?
1) Binding of the drug to the receptor
2) Activation of the receptor leading to a response
Define occupancy?
What is the equation?
The proportion of receptors that are occupied by the drug
Number of receptors occupied/total number of receptors
How can occupancy be measured directly?
Radioligand binding (radiolabelled agonist)
Method:
(i) Prepare cells or membranes e.g. guinea pig ileum –
detergent treatment and centrifugation
(v) Count radioactivity of filter
(iv) When equilibrated remove unbound drug by
filtration (bound drug remains attached to filter)
(iii) Add radiolabel to samples/filters at different
concentrations and equilibrate
(ii) Aliquot out membranes onto filters
What is the law of mass action?
Rate of a reversible chemical reaction is
proportional to the product of the concentration of the
reactants.
What is Kd?
A measure of affinity
A high Kd means a low affinity
What is a drug?
A substance that can modify biological functions of living organisms
What are statins?
Competitive inhibitors of the enzyme HMG-CoA reductase which is a key enzyme in the rate-limiting step of cholesterol synthesis
Why do pro-drugs need enzymes?
They are more stable forms of drugs which require chemical/enzymic modification before they become active
What are the different types of protein drugs can target?
Enzymes
Transporters (inhibitors or false substrates)
Ion channels (blockers or modulators)
Receptors (agonists and antagonists)
Describe GPCRs
7 transmembrane receptors
No intrinsic enzyme activity
Transmembrane alpha-helices
Coupled to heterotrimeric G-proteins
Higher diversity between families in the extracellular, ligand-binding domain
Larger conformational changes in the intracellular downstream signalling module
N-terminal on the outside, C-terminal on the inside
What happens when a GPCR is activated
TM5 (extends) and 6 (displaced) are shifted upon activation (uncovers binding site for GEFs)
GDP exchanges for GTP on the G-protein, causing dissociation of the beta-gamma sub-unit. This is stimulated by GEFs (guanine nucleotide exhcange factors)
How is a G-protein turned off?
They have their own GTPase activity (alpha sub-unit) which cleaves GTP to GDP
What do the different G-protein sub-types do?
Galpha-i = inhbits adenylyl cyclase Galpha-s = activates adenylyl cyclase Galpha-q = activates phospholipase C-beta
Gs pathway
Adrenaline/noradrenaline is the ligand which acts on B-adrenoceptors
Activates adenylyl cyclase, which, in turn, produces cAMP, which, in turn activates cAMP-dependent protein kinase (PKA), this inhibits myosin light-chain kinase (MLCK) which causes vasodilation
Pertussis toxin inhibits G alpha-s GTPase activity
Gi pathway
Adrenaline/noradrenaline is the ligand which acts on A2-adrenoceptors
Inhibits adenylyl cyclase activity, decreasing the production of cAMP from ATP, which, in turn, results in decreased activity of cAMP-dependent protein kinase
Inhibited by Cholera
Gq pathway
Adrenaline/noradrenaline is the ligand which acts on A1-adrenoceptors
Activates PLC which cleaves PIP2 into diacyl glycerol (DAG) and IP3.
DAG remains bound to the membrane and can activate PKC
IP3 is released as a soluble structure into the cytosol.
IP3 binds to IP3 receptors, in the sarcoplasmic reticulum (SR) to cause them to open and release calcium ions into the cell.
Give an example of an action the beta-gamma sub-unit does when activated
In the heart
ACh is the ligand that works on M2 muscarinic receptors (Gi-linked)
Beta-gamma sub-unit has receptors on the potassium channels and causes a conformational change in them, increasing permeability to K+ and hyperpolarising the membrane
How is GPCR signalling terminated?
There are phosphorylation sites exposed with the shifting of TM5 and 6 which are phosphorylated by GPCR kinases
GPCR can no longer interact with G-proteins
New binding site for beta-arrestin which downregulates the activity of the GPCR. It interaxts with clatherin and AP2 to form clatherin-coated pits which internalise the receptor.
Beta arrestin can also show signalling activity
Becomes enclosed in an endosome, not responsive to ligand
The endosome either fuses with lysosymes or recycles the GPCR
What are RTKs?
Enzyme coupled transmembrane receptors (they have intrinisc enzyme activity)
Main ligands are growth factors (divalent)
What happens when an RTK is activated?
A conformational change resulting in dimerisation
The intracellular kinase domains phosphorylate each other’s tyrosine hydroxyl groups
The phosphorylation opens the substrate-binding site by pushing the activation loop away which makes the kinase fully active
Activated RTKs can activate phospholipase-C gamma by phosphorylating it
What two domains mediate protein recruitment to activated RTKs?
SH2 domain
PTB (phosphotyrosine binding) domain
Adaptor proteins act as the link when a protein doesn’t have one of these domains
What does the SoS protein do?
SoS binds to RTKs via the GRB2 adaptor protein
It’s a GEF for the G protein Ras which activates the protein kinase Raf -> Mek -> Erk -> phosphorylates transcription factors in the nucleus
What do cytokines do?
Recruit immune cells in response to pathogens
TGFs and tyrosine kinase-linked receptors are cytokines
What are hyrdophobic ligands?
Also known as nuclear receptors
Pass through the lipid bilayer (simple diffusion)
Zinc fingers for DNA binding
N-terminal varies in length and activates gene transcription
Ligand binding domain ends in the C-terminus and the ligand binds in the middle of the tertiary structure
3 groups:
Steroids
Non-steroidal lipophilic hormones
Orphans (unknown ligands)
How do steroid hormones work?
Diffuse through the membrane and binds
to steroid hormones attached to HSP complexes
Secondary signal is sent to another receptor in the nucleus attached to a response element, leading to a change in gene transcription
What converts cAMP to AMP?
cAMP phosphodiesterase
What does ATP stand for?
Adenosine Triphosphate
What is a use of cAMP?
Binds to the subunits of PKA causing them to dissociate, This allows PKA to reach its full level of activity
Where is adrenaline released from?
The hormone is released from chromaffin cells in the adrenal medulla just above the kidneys
Where is noradrenaline released from?
The neurotransmitter is released from noradrenergic neurones in the CNS and ANS (autonomic)
How is noradrenaline made?
Tyrosine -> Dopa -> Dopamine -> Noradrenaline (-> Adrenaline in chromaffin cells)
Tyrosine hydroxylase is the rate-limiting enzyme (tyrosine -> DOPA).
How is adrenergic transmission manipulated?
Alpha-methyl tyrosine is a competitive inhibitor of the tyrosine hydroxylase enzyme which is the rate limiting enzyme (tyrosine ->DOPA)
Alpha-methylDOPA is an analogue of DOPA. Converted to alpha-methyldopamine -> alpha-methylnoradrenaline which is more stable than noradrenaline and outcompetes it. It is also a selective agonist meaning it doesn’t stimulate all adrenoceptors
What are alpha2-adrenoceptors?
Presynaptic inhibitory autoreceptors which decrease noradrenaline release.
Coupled to Gi proteins which eventually leads to a reduction in VG Ca2+ channel opening (beta-gamma subunit)
What is the order of potency for alpha-adrenoceptor ligands vs beta-adrenoceptors?
Alpha:
Adrenaline >/ Noradrenaline > Isoprenaline
Beta:
Isoprenaline > Adrenaline ->/ Noradrenaline
What are the effects of beta-adrenoceptors on the body?
All work the Gs pathways to stimulate adenylyl cyclase
Beta-1 adrenoceptors in the heart activate the sympathetic pathway having positive inotropic effects
Beta-2 andrenoceptors cause bronchodilation in the lungs and vasodilation elsewhere (alpha-1 causes vasoconstriction.
What can continuous asthma attacks lead to?
Irreversible thickening of the airways due to hypertrophy (increase in cell size) and hyperplasia (increase in cell division)
Increased volume of smooth muscle and thickening of the base membrane decrease the volume of the lumen
What is the FEV1?
The Forced Expiratory Volume in one second
What are the stages of an asthma attack?
(Acute) Early:
Mast cells build up in airways
When stimulated they release chemokines and spamogens (interact with smooth muscle causing contraction)
Late:
Eosinophills are attracted to airways and release factors which cause a second contraction hours after the first
How is asthma treated?
Prophylaxis:
- anti-inflammatory agents e.g. cprticosteriods
- overuse can cause Cushing’s syndrome
- newer corticosteroids can be inhaled directly into the lungs, aren’t good at passing through to the bloodstream and are readily metabolised
Symptomatic relief:
Beta-2 selective adrenoceptor agonists (bronchodilation)
Only affect breathing not heart rate
PKA activity leads to a decrease in Ca2+ which inhibits MLCK and promotes MLCP
What is the difference between salbutamol and salmeterol?
Both beta-2 adrenoceptors
Salbutamol is fast acting but short-lived
Salmeretol is bad at reversing the acute attack but prevents bronchospasm for up to 18 hours. This is due to the long hydrophobic tail which tethers it to the ligand
What is neuropathic pain?
Feeling pain with no actual cause
What is the point of a biological assay?
To determine the biological activity of a substance
What are the aims of animal testing?
Look for side effects
Establish pharmokinetic properties
Determine the plasma concentration the the drug is most effective at
What are the phases of clinical trials?
Phase 1:
- Small group of healthy individuals
- Testing for side effects, metabolism and removal
Phase 2:
- Small group of patients with the disease
- Test of effectiveness
- 2b = longer term testing
Phase 3:
- Large groups of people
- Confirm effectiveness
- Comparisons to leading competitors
Phase 4:
- Studies after the drug has been released to see -effects of long term use
- Determine cost-effectiveness
What is Myasthenia Gravis?
An autoimmune neuromuscular disease with weakness and fatigue. It gets worse with more activity and recovery occurs during rest.
Produces antibodies that reduces sensitivity to nicotinic ACh receptors
Treated with acetylcholinesterase inhibitors
What does curare do?
Inhibits nicotinic acetylcholine receptors
High doses leads to asphyxiation due to paralysis of the diaphragm
How are platelets activated?
ADP is released at the site of tissue injuries and activates the P2Y12 GPCR on the platelets linked to Gs.
What is a prodrug?
A biologically inactive compound which can be metabolised in the body to produce a drug.
What is diabetic macular oedema?
Fluid leaking from capillaries in the retina
Occludes vision
Caused by an increase in the growth factors VEGF and Ang2
What is the function of the vascular system?
To supply oxygenated blood and nutrients to tissues and to remove waste products
What side of the heart deals with deoxygenated blood?
Right side
What are the layers of tissue in blood vessels?
Connective tissue
Smooth muscle
Endothelium
Describe the anatomy of the different blood vessels
Arteries:
- Large amount of elastic tissue (allows vessel to stretch with heart beats)
Arterioles:
- Less elastic tissue, more smooth muscle
Capillaries:
- Only endothelium
- One cell thick
Veins and venules:
- Walls slightly thicker than capillaries
- Small amounts of smooth muscle
What is interstitial fluid?
The fluid surrounding the capillary bed