Block D Lecture 2 - Proteins of the Cytoskeleton Flashcards

1
Q

What are 3 properties of cells which depend on the cytoskeleton?

A

Answers Include:

Correct shape of cells

Cells need to be physically strong (robust)

Cells have to be properly structured internally

Some cells need to be able to change their shape and move

Growth, division and adaptation needs internal rearrangement to occur

(Slide 4)

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2
Q

What is the structure of the cytoskeleton?

A

It is a system of filaments which themself are a repetitive assembly of a large number of small subunits

(Slide 4)

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3
Q

What are 4 specific functions the cytoskeleton performs to maintain properties of the cell?

A

Answers Include:

Pulling chromosomes apart at mitosis

Intracellular traffic of organelles

Supports the plasma membrane

Allows swimming or crawling of cells

Contraction in muscle cells

Guides growth of plant cell wall

Maintains cell shape

(Slide 5)

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4
Q

The cytoskeleton has 3 main types of filaments with different mechanical properties and dynamics. What does result in?

A

Dynamic behaviour which allows an enormous range of structures to be built by the cytoskeleton

(Slide 6)

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5
Q

What are the 3 main filaments in the cytoskeleton, and what properties do they each have?

A

Intermediate filaments - provide mechanical strength and resistance to shear stress

Microtubules - Controls positioning of membrane-enclosed organelles, and intracellular transport

Actin - Controls the shape of the cell’s surface and whole cell locomotion (the movement of the cell from one place to another)

(Slide 6)

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6
Q

What is shear stress?

A

The force per unit area exerted by blood flow on the endothelial cells lining blood vessels

(Slide 6)

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7
Q

In addition to filaments, what are 2 other components which are included in the cytoskeleton, and what do these provide?

A

Accessory proteins - regulate linkage and assembly of the cytoskeleton filaments, and bring the cytoskeleton under the control of extracellular and intracellular signals

Motor proteins - Move organelles and filaments

(Slide 6)

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8
Q

What are the functions of microtubules?

A

They form a star-like cytoplasmic array and are involved in bipolar mitotic spindle formation (for chromosome segregation).

They also act as motile whips in flagella and cilia and serve as transport tracks

(Slide 7)

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9
Q

What are 3 structures actin forms and what are these essential for?

A

Answers Include:

Lamellipodia - involved in cell motility and cell adhesion

Filopodia - Involved in cell signalling, sensing the environment and cell to cell communication

Stereocilia - hair cells in the inner ear which function in balance and mechanotransduction, allowing us to hear

Contractile ring - during cytokinesis, the final step of cell division, actin filaments form a contractile ring which is crucial in physically separating the daughter cells

(Slides 8 and 9)

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10
Q

What purpose does actin filaments serve in muscle tissue?

A

It enables muscle tissue to contract

(Slide 9)

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11
Q

What are 3 structures / functions which intermediate filaments form / have and what do these do?

A

Answers Include:

They line the inner face of the nuclear envelope - maintaining structure and function of the nucleus

They form twisted strong cables in the cytosol - to provide mechanical support and maintain cell shape and stability

Formation of long robust axons in neurons

Formation of hair and fingernails

(Slide 10)

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12
Q

What are filaments made up of?

A

Assemblies of small protein subunits (such as actin for actin filaments or tubulin for microtubule filaments) with these subunits being held together by non-covalent weak interactions

(Slide 11)

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13
Q

How can cells undergo rapid structural reorganisation?

A

As the subunits which make up filaments are small enough to diffuse rapidly throughout the cytosol with disassembly, diffusion and reassembly at a different site allowing rapid structural reorganisation and movement

(Slide 11)

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14
Q

What is a protofilament?

A

A linear assembly of subunits.

Multiple protofilaments bind to each other generates lateral and longitudinal bonds

(Slide 12)

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15
Q

What is the purpose of protofilaments?

A

To provide stability and resistance to thermal breakage for a filament

(Slide 12)

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16
Q

Why are the ends of protofilaments kept dynamic and what does this mean?

A

Keeping the ends dynamic means that the filaments can undergo polymerisation (growth) and depolymerisation (shrinkage). This is done to allow rapid disassembly

(Slide 14)

17
Q

How are subunits (and protofilaments) arranged in intermediate filaments?

A

They are elongated and staggered, with a high number of lateral bonds and contacts between α-helical coiled coils

(Slide 13)

18
Q

What does the arrangement of subunits (and protofilaments) within an intermediate filament enable?

A

The staggered structure enables intermediate filaments to tolerate stretching and bending - forming a strong rope-like structure

(Slide 13)

19
Q

What is the first step of new filaments being formed?

A

Nucleation - when small unstable clusters of monomers come together to form a stable “seed or nucleus” from which the filament can grow

(Slide 14)

20
Q

Why is nucleation the hardest step of new filament formation?

A

As smaller aggregates are unstable - leading to a kinetic barrier which means the monomers would rather dissociate than grow.

It is difficult for filaments to grow at this point as the small aggregates don’t reach a large enough size for the polymerisation process to occur efficiency

(Slide 14)

21
Q

What does the instability of smaller aggregates during nucleation result in?

A

A lag-phase where no visible growth occurs until a stable “nucleus” is formed

(Slide 14)

22
Q

What happens in new filament formation after a stable “nucleus” is formed?

A

The elongation phase occurs, where the filament grows rapidly as monomers add to the end of the filament

(Slide 14)

23
Q

Why doesn’t filament assembly occur endlessly during the elongation phase of new filament formation?

A

As there is a point where assembly is balanced by disassembly, forming a steady state / equilibrium.

The distinct concentration of monomers which this occurs at is called the critical concentration (Cc)

(Slide 14)

24
Q

What is the structure of microtubule filaments?

A

They are made of α and β-tubulin subunits, which are attached to each other and arranged head-to-tail to make a protofilament.

13 protofilaments form a hollow cylindrical structure.

Each α and β-tubulin also has a GTP attached to them.

Microtubules are attached to the centrosome (microtubule organising centre, MTOC)

(Slide 7 and 17)

25
What is the structure of actin filaments?
Head-to-tail assembly of monomers which form 2 parallel protofilaments which are twisted round each other, forming a DNA double helix like structure. Actin monomers also contain an ATP (an ADP when added to the filament) (Slide 18)
26
What is the difference between the plus(+) and minus(-) ends of microtubule and actin filaments?
They grow faster at their plus ends, and the plus end is the more dynamic end (Slide 19)
27
How are actin and tubulin enzymes?
As they catalyse the hydrolysis of nucleotide diphosphates (ATP and GTP) to ADP and GDP (only in β-tubulin) respectively (Slide 20)
28
What are the function of GTP / ATP in microtubule / actin filaments?
The GTP which is bound to the α-tubulin is never hydrolysed or released, but it helps stabilise the tubulin dimer and ensuring the structural integrity of the microtubule. When the monomer subunit is added, the GTP / ATP is hydrolysed to GDP / ADP, and the nucleoside diphosphate remains trapped in the filament. If the GTP / ATP isn't hydrolysed, tubulin / actin stay in their T-forms and lean more readily towards assembly, whereas after hydrolysation to GDP/ADP they get converted to their D-forms which leans more readily towards disassembly. (Slide 20)
29
What happens as a result of most of the tubulin / actin subunits at the (-) end being in the D-form?
It makes this end a lot more prone to disassembly as the D-forms have weaker binding, enabling filaments to rapidly disassemble (Slide 20)
30
Why are most free actin / microtubule subuni