Block 5 Flashcards
RTK
Receptors with inherent kinase activity that bind peptide hormones such as EGF; monomeric in the plasma membrane but dimerize when bound which allows them to phosphorylate target molecules
What is the RTK signaling pathway?
EFG -> binds/dimerizes RTK -> phosphorylates SH2/PTB -> recruits Grb2 -> binds Sos on its SH3 domain -> activates Ras -> Raf -> MEK -> MAP kinase
Grb2
Recruited by dimerized form of SH2, has an SH3 domain that binds the GEF SOS
Sos
GEF for Ras G protein
Ras
G protein that is inactive and membrane bound when bound to GDP but is activated by GEFs that exchange GTP for GDP; activate the Mitogen Activated Protein (MAP) kinase pathway once activated
MAP kinase pathway
Common signaling pathway to activate transcription factors; Active Ras -> activates Raf -> phosphorylates MEK -> phosphorylates MAP kinase -> MAP kinase dimerizes and translocates to nucleus -> atcivates transcription factors for cell proliferatoin (such as c-fos which activates cyclin D)
Cyclin D
Gene involved in the first step of cell division
How is the RTK signal terminated
Usually by downregulation of the receptor via phosphatases
Why are mutated versions of RTK clinically significant?
Mutated RTK can result in a constitutively active receptor that activates the Ras-MAP kinase pathway which is associated with tumor growth
Why are mutated Ras proteins clinically significant?
Mutated Ras can bind but not hydrolyze GTP causing them to be trapped in the active state
Her2 receptor
Commonly mutated in breast CA- single amino acid mutation leads to dimerization of the receptor w/o a ligand which activates downstream target proteins
TGF-beta signaling pathway
Activates many cellular processes including modulating the immune response, inhibiting cell proliferation, and promoting cell differentiation by phosphorylating proteins that are able to translocate to the nucleus and regulate transcription
What are the TGF-beta isoforms and what do they do?
TGF-beta has 3 isoforms; R2 and R3 bind TGF-beta and recruit R1, R1 is activated by R2 and then phosphorylates Smad proteins
What are the steps in the TGF-beta signaling pathway?
TGF-beta binds to R2 and R3 isoforms -> recruits R1 -> R2 phosphorylates R1 -> active R1 phosphorylates Smad3 -> dimerizes and translocates to nucleus and binds DNA
What are the 2 ways that the TGF-beta signaling pathway terminated?
- Sno and Ski proteins bind Smad3 and recruit HDACs to downregulate trasncription
- Negative feedback- TGF-beta activates inhibitory Smads which block Smad from translocating to the nucleus
How do cytokines transmit signals?
Ctokines do not have inherent kinase activity so they have to bind to other kinases; they use the JAK-STAT pathway
What is the JAK-STAT pathway?
Cytokines binds to receptor -> JAKs dimerize and activate -> creates binding site for STAT -> STAT dimerizes via SH2 domains -> translocates to nucleus and bind DNA
How is the cytokine signal terminated?
SHP1 phosphatase or SOCS proteins
How does SHP1 phosphatase terminate cytokine signaling?
Removes phosphate from JAK; w/o phosphate, JAK has very weak kinase activity and can’t phosphorylate STAT proteins
How do SOCS proteins terminate cytokine signaling?
Competitive inhibition w/ JAK or STAT bc they have SH2 domains, can also recruit ubiquitin ligase to ubiquinate JAKs
Xeljanz
RA tx that inhibits JAK
What cellular processes use cytokine signaling?
Hematopoiesis and the immune response
Frizzled receptor
Receptor for Wnt that regulates the levels of beta-catenin protein; consists of 7 transmembrane domains that associates w/ co-receptor LRP
What happens when Wnt is not bound to Frizzled?
W/o ligand, beta-catenin is recruited to a destruction complex (includes APC and Axin), phosphorylated, and ubiquinated
Familial Adenomatous Polyposis
Familial form of colon CA caused by mutated APC gene
What are the steps in the Wnt signaling pathway?
Wnt -> binds frizzled -> recruits Axin away from destruction complex -> beta-catenin is not degraded and translocates to nucleus -> associates with TCF -> activates genes for cell growth
How is Wnt clinically significant?
Wnt is critical for embryonic development and for regulating growth of colon/mammary epithelial cells
APC mutation
Common in colon CA; APC is mutated an unable to form a destruction complex which leads to overexpression of beta-catenin
Receptor cross talk
The input a cell receives from different receptors are integrated to trigger a particular pattern of changes in enzyme activity or gene expression
Beta-arrestin complex
While it normally shuts down GPCRs, it can recruit Src to activate MAP kinase which explains why cardiac hypertrophy is a feature of prolonged epi exposure
Cross talk between GPCRs an MAP kinase pathway
Prolonged epi exposure can lead to cardiac hypertrophy because beta arrestin complex recruits Src, which then activates the MAP kinase pathway
Mitogen
Any molecules that stimulates cell proliferation
What is the cell cycle?
The process that controls cell division
What are the 5 phases of the cell cycle?
G0- quiescent G1- initial commitment point for cell division S- DNA replication G2- preparation for mitosis M- mitosis
Which cells go through the cell cycle?
All cells go through the cell cycle but at varying rates, eg cells of the GI tract are continually dividing while liver cells only divide if exposed to a specific stimulus and neurons only divide under unusual circumstances
Mitosis promoting factor (MPF)
Cyclin B-CDK1 complex that stimulates mitosis/mieosis; stimulated by progesterone
Cyclins
Proteins that are synthesized and degraded w/ the cell cycle to activate specific cyclin-dependent kinases (CDKs)
CDKs
Proteins that regulate the cell cycle by allowing for ordered recruitment and expression of genes during cell cycle progression
Cyclin D-CDK4,6
Activated by GFs during G1 to initiate the process of cell division to inhibit Rb ie induce EF2
Cyclin E-CDK2
Expressed later in G1 after the cell passes the restriction point; increases phosphorylation of Rb so that EF2 is fully activated and assemble to pre-replication complex proteins ORC, mcm helicase, CDC6, and CDT1
How do cyclins activate CDKs?
Cyclin binding causes a conformational change that facilitates ATP binding and exposes a phosphorylation site on the T-loop of the CDK; phosphorylation of the T-loop is what activates the CDK
At what point is the cell committed to divide?
Once it passes the restriction point in the G1 phase
What is the restriction point?
Once a cell has accumulated enough cyclin E
Rb
Tumor suppressor that inhibits the EF2 transcription factor; inactivated by cyclin D-CDK4,6
EF2
Transcription factor that induces DNA replication enzymes, cyclin D, cyclin E, and cyclin A which are required for cell to proceed to the next stage of the cell cycle
ORC
Origin replication complex
What happens during the S phase?
Cyclin E is degraded so CDK2 can associate with cycin A which triggers recruitment of DNA polymerase and activates mcm helicase
Why can DNA only be replicated once?
Origins that have fired once cannot be relicensed until they pass through the following mitosis; CDC6 is degraded or exported
What happens during the G2 phase?
Cyclin A and B accumulate and form complexes with CDK1
What determines whether the cell progresses from G2 to mitosis?
Cell size (ie whether it has sufficient cell components) and some external features or DNA repair pathways
What do cdc25 and Wee1 do?
Control progression from G2 to mitosis
cdc25
Phosphatase that activates the Cyclin B-CDK1 (MPF) complex so that the cell can continue to mitosis
Wee1
Kinase that adds an inhibitory phosphate to tyrosine 15 on the Cyclin b-CDK1 complex so that the cell is unable to progress to mitosis
How do mitotic cyclins (MPF) trigger mitosis?
Phosphorylate several proteins to induce mitosis including lamins, condensins, microtubule associated proteins, and Anaphase Promoting Complex/Cyclosom (APC/C)
What happens when MPF phosphorylates lamins?
Lamin network is disrupted and the nuclear envelope disassembles
What happens when MPF phosphorylates condensins?
Chromosomes condense
What happens when MPF phosphorylates microtubule associated proteins?
Mitotic spindle can form
What happens when MPF phosphorylates the APC/C?
Chromosomes are able to separate
APC/C
Ubiquitin ligase that degrades the anaphase inhibitor securin and later degrades MPF which causes degradation of cyclin B so that the cell can re-enter G1
cdc20
Binds to APC/C and triggers it to ubiquinate securin
cdh1
Binds to APC/C and triggers it to ubiquinate cyclin B
Which 2 proteins regulate the APC/C?
cdc20 and cdh1
What is the separase enzyme?
Cleaves the links holding sister chromatids together; inhibited by securin
Securin
Enzyme that inhibits anaphase by inhibiting the separase enzyme
Interphase
Encompasses G0, G1, S, and G2 phases
Prophase
Chromosomes condense and spindle begins to assemble
Prometaphase
Nuclear envelope disassembles, spindle assembly is completed, chromosomes begin to align b/w the two spindle poles
Metaphase
Chromosomes completely align to trigger anaphase
Anaphase
Chromosomes physically separate, sister chromatids move to opposite spindle poles and poles then move apart
Telophase
Nuclear envelope reforms and cytokinesis occurs
What % of the human genome accounts for individual differences?
0.1%
Endogenous (spontaneous) mutagenesis
DNA replication errors caused by normal cellular processes
Genetic defects
Defects in the endogenous DNA repair and detox machineries that increase risk of developing certain types of CAs
Exogenous mutagenesis
Mutations resulting from exposure to carcinogenic agents
What are the 5 types of DNA damage caused by endogenous mutagenesis?
- oxidation of bases
- alkylation of bases
- hydrolysis of bases ie deamination, depurination, etc
- bulky adduct formation
- mismatch of bases
Oxidation of bases
ROS oxidize bases and interrupt the DNA
Alkylation of bases
Addition of alkyl groups
Deamination
Loss of amino group from C, methyl C, G, or A (deamination of A or G is more rare)
What happens when C is deaminated?
Deaminated C produces U and causes a C to T point mutation
What happens when A is deaminated?
Deaminated A produces hypoxanthine (HX) and causes an A to G point mutation
What happens when methyl C is deaminated?
Deaminated methyl C is the same as T and the cell cannot differentiate between the mutated T and normal T so this causes an irreversible G-C to A-T mutation
Nitrous acid, HNO2
Potent mutagen formed from nitrates (NO3) or nitrites (NO2) that stimulates deamination
Vitamin C
Inhibits nitrosamine formation in the stomach
How do BRCA1 & 2 contribute to risk of breast CA?
These are DNA repair machinery that increase risk of breast CA when they are mutated
HPV
Causes cervical CA
HBV
Causes liver CA