Block 3 Flashcards
Amphiphathic
Hydrophobic/Nonpolar & Hydrophilic/Polar
Outer Leaflet (Faces extracellular matrix)
Glycolipids, Glycoproteins, Proteoglycans
Phosphatidylserine involved in what type of signal?
apoptosis
what recognize phosphatidylserine when its flipped to the outer leaflet?
macrophages
what forces hold the leaflets together
van der waals
Flip-flop requires
Flippases and Scrambalases
flippases characteristics?
phospholipid specific
scrambalases characteriscs?
Non-specific scrambling
• In smooth ER membrane: mix up newly synthesised phospholipids
• Activated during apoptosis
what Increase Fluidity in membranes?
Unsaturated Fatty Acids (More
cis-double bond kinks)
• Increase temperature
• Short chains
what Decrease Fluidity in membranes?
Saturated Fatty Acids (NO
double bond kinks)
• Decrease temperature
• Long chains
Lipid Rafts
Rich in Cholesterol & Glycosphingolipids,
Contain integral & peripheral membrane proteins, GPI: Glycosylphosphatidylinositol anchor
GPI: Glycosylphosphatidylinositol anchor
Glycolipid that attaches proteins to PM
Membrane Protein Functions
Transport (nutrients, metabolites, ions across bilayer)
• Anchor membrane to macromolecules on either side
• Receptors: signal transduction
• Enzymes (lactase in apical membrane of GI epithelial cells)
• Cell identity markers: MHC
• Protein movement: Rotational and lateral diffusion
Integral transmembrane proteins (30% total proteins, amphipathic)
Single: (Glycophorin) /Multipass: (Band3) proteins
• Often α-helical in secondary protein structure
• Receptors (signalling & adhesion), channels, transporters/pumps
Peripheral proteins
Located entirely outside but associated with inner / outer leaflet by noncovalent
(often electrostatic) interactions
• Part of cytoskeleton, cytochrome C
Lipid-anchored (peripheral) proteins
Located either side of bilayer, have lipid group that inserts into bilayer
• Signaling (Glycosylphosphatidylinositol: GPI – Outer Leaflet) &
Adhesion (Fatty acylation or prenylation link proteins – Inner Leaflet)
Red Blood Cell Membrane main characteristic
no nucleus
Two types of Transmembrane proteins present in RBC?
glycophorin and Band 3
glycophorin
single pass transmembrane protein present in rbc
Band 3
Multi pass transmembrane protein in rbc
Peripheral proteins in rbc?
Ankyrin and Band protein 4.1
Ankyrin
Connects Band 3 with spectrin
Band Protein 4.1:
Connects Glycophorin with Actin and also
connects Band 3 with Spectrin “BAG of BS”
Cytoskeletal protein of rbc
spectrin
spectrin
(α & β chains) that reinforces bilayer, deformable
network, and can withstand stress
Junctional Complex on rbc
4-5 tetramers of Spectrin held together by Actin and
Protein 4.1 “SAP”
Acanthocytosis / Spur Cell Anaemia mechanism?
Increase Cholesterol (Transferred to outer leaflet) defects RBC cell membrane → Acanthocytes → Decreased deformability → Sequesration and destruction by spleen → Haemolytic Anemia →Increase Reticulocytes
Acanthocytosis / Spur Cell Anaemia key words to look for
Jaundice, Ascites, Caput Medusa, Chronic Liver
Disease, Acanthocytes, Spur Cells
Acanthocytosis / Spur Cell Anaemia cell biology
Decreased Fluidity: Increased cholesterol Saturated fatty acid tails (No cis-double bonds) Long fatty chains Decreased Temp
Hereditary Spherocytosis inheritance pattern?
Autosomal dominant in 75% of cases
Hereditary Spherocytosis mechanism
Defect Spectrin, Ankyrin, Protein 4.1 defects RBC
cytoskeleton membrane → Decreased
deformability → Sequesration and destruction by
spleen → Haemolytic Anemia →Increase
Reticulocytes
Hereditary Spherocytosis key words
Splenomegaly, Jaundice, Gallstone
Spectrin, Ankyrn, Protein 4.1
Hereditary Spherocytosis cell biology
Spectrin: Cytoskeletal protein that forms junctional
complex
Ankyrn: Peripheral protein that connects Band 3
(multipass transmembrane protein) with spectrin
Protein 4.1: Peripheral protein that connects
Glycophorin with Actin and also connects Band 3
with Spectrin
Glycocalyx
5% cell membrane = carbohydrate (prrimary marker for cell recognition)
Glycocalyx function in the cell
Protection (from acid, enzymes, etc.)
• Recognition (leukocyte binding to endothelial wall) & Cell adhesion
• Repulsion: negative charges from sialic acid sugars
• Embryonic development: guides embryonic cells to destination
how glycocalyx differ in cancer cells than on normal cells?
different sugar coat than noncancerous cells, Immune defense: recognizes difference
Anti-cancer therapy and glycocalyx
target enzymes that assemble tumor Glycocalyx
Electin
important for binding to sugar chains involved for cell to cell
recognition
L-selectins recognise?
addressins on lymphoid organ endothelial cells
G protein Cycle
The GTP “switch”
Small monomeric G proteins
RAS, RHO, RAB, RAN, ARF
Every G protein has what in coomon?
GAP and GEF
GAPs
GAPs: “Turns OFF” Hydrolyze GTP to GDP “GAP turns me OFF”
GEFs: guanidine nucleotide exchange factor
“Turns ON” Exchange GDP for GTP “GEF turns me ON”
Nuclear Import
process that imports cargo from the cytosol into the nucleus
cargo protein that is destine to go into the nucleus contains?
Nuclear Localization Signal (NLS)
Importin
(Import receptors in cytosol) binds NLS & nucleoporins:
Imports
nuclear export
process to carry cargo from the nucleus to the cytosol. such as ribosomes or mrna
cargo protein that is destined to go out of the nucleus contains what?
Nuclear Export Signal (NES)
Exportin
(export receptors in nucleus) binds NES & nucleoporins:
Exports
Import & Export require what?
Translocation of protein complexes through NPC requires energy
(RAN GTPase)
Nuclear Import steps
1. Importin binds to Cargo w/ NLS in cytoplasm 2. Cargo-Importin binds to NPC to enter the nucleus 3. Ran-GTP binds to Importin thus creating dissociation of Cargo in nucleus 4. Importin-GTP enters cytoplasm 5. Ran-GAP hydrolyzes Ran-GTP → Ran-GDP thus creating dissociation of Importin in cytoplasm
nuclear export steps
1. Exportin bound Ran-GTP binds to Cargo w/ NES in nucleus 2. RanGTP-Exportin-Cargo complex binds to NPC enter cytoplasm 3. Ran-GAP hydrolyzes Ran-GTP → Ran-GDP thus creating dissociation of Exportin, Cargo, and Ran-GDP 4. Exportin returns back to nucleus (Does NOT need signal to return back to nucleus)
Ran GEF
• Guanidine Nucleotide Exchange Factor • ON SWITCH • Exchange GDP with GTP • In nucleus
Ran GAP
- GTPase Activating Protein
- OFF SWITCH
- Hydrolyze GTP to GDP
- In cytosol
related to the nuclear envelope, what triggers the start of mitosis
Lamin phosphorylation
when is lamin phosphorylated and which kinase does the job?
during prophase 1 by Cdk1
what is the result of the phosphorylation of lamins?
nuclear lamina disassembly
→ nuclear envelope disassembly into vesicles containing Lamin B
how are lamins A, B and C released after phosphorylation?
Lamins A & C released as free dimers
• Lamin B = anchored to inner membrane
what triggers the end of mitosis? by what process?
Lamin Dephosphorylation → Inactivation of Cdk1
process of nuclear reassembly after mitosis?
- Membrane vesicles bind chromosome surface → reassembly
* Telophase: Lamin A and C start to bind again to lamin B
nuclear membrane outer layer is continous with what other organelle?
Rough ER
On the outer membrane of the nucleus are proteins that interact with what?
cytoskeletal fillamets
function of nuclear lamins?
Maintain structure & stability:
attaches to integral membrane
proteins & NPCs (important for
spatial separation), protects DNA
Nucleolus substructures
Fibrillar center, Dense fibrillar components / pars fibrosa “Fibrillar Fix”, Granular component / pars granulosa “Great Assembly”
Fibrillar center of nucleolus
- Transcriptionally inactive DNA
* NORs (Nucleolar Organiser Regions: pre-rRNA genes located)
Dense fibrillar components / pars fibrosa
“fibrilar fix” •rRNA being transcribed then cleaved & modified by snoRNPs
Granular component / pars granulosa
“Great Assembly”
•rRNAs begin assembly with ribosomal proteins
Hutchinson-Gilford Progeria Syndrome inherritance pattern?
(Autosomal Dominant Sporadic)
Hutchinson-Gilford Progeria Syndrome mechanism?
“progeriA defect lamin A”
Defect in ONLY Lamin A → Unstable Nuclear Envelope (Bleb
formation, Loss of peripheral heterochromatin, NPC clustering)
→ Progressive Nuclear Damage → Premature Cell Death
Hutchinson-Gilford Progeria Syndrome key words
“Premature Aging”
Lamin A, Prominent eyes, Alopecia (Loss of hair), Loss of
subfat, Arteriosclerosis, Joint stiffness, Accelerated age, Bleb
formation
Hutchinson-Gilford Progeria Syndrome cell biology
Arteriosclerosis: Scarring of vesicles and become hard
co-translation translocation meaning
transport into the ER
Post-translational translocation?
transport into other organelles
Emery-Dreifuss muscular dystrophy
affect which part of the cell?
Nucleus
Emery-Dreifuss muscular dystrophy
what type of effect on the organelle it affects?
Mutation Emerin or LaminA/C Contractures, especially in the elbows, ankles, neck → Flexion deformity of elbows, limited neck flexion Muscle weakness & atrophy Conduction defects & arrhythmias Sudden heart failure common
Cotranslational Translocation steps
- Signal Recognition Particle (SRP) binds to ER signal sequence
on protein - SRP binds to SRP receptor in ER membrane
- SRP brings ribosome to translocon (pore complex) and transfers the
ribosome - SRP displace and recycled
BiP (Binding Protein):
Lumenal ER chaperone (help proteins fold)
and binds peptide in ER lumen & pulls it in
Signal peptidase cleaves what off
N-terminal signal peptide as protein
enters ER lumen
what doenst get cleaved during cotranslational translocation?
the internal sequences of proteins
Single-Pass Transmembrane Proteins, N-terminal signal sequence job
(Start Transfer signal) initiates
translocation (Gets Cleaved)
Single-Pass Transmembrane Proteins, Stop Transfer signal job
Anchors protein in membrane AFTER ER signal sequence is cleaved
Single-Pass Transmembrane Proteins, Internal signal sequence job
(start transfer signal) initiates
translocation (NOT cleaved)
Multipass transmembrane proteins
• Internal signal sequence (start transfer signal)
• Stop transfer sequence
• The multiple stop signals
→ Many hydrophobic α-helices cross the membrane
If a protein has an N terminal ER signal sequence, and two additional
hydrophobic stretches of amino acids, what type of protein is this?
Transmembrane