Biosynthesis Flashcards
What is nature’s enol equivalent?
What is its reactivity like?
Nature uses acetyl co-enzyme A as its enol. The ketone in the actyl group can tautomerise to an enol.
Acetyl CoA has the same reactivity as a thioester in the lab - the equilibrium is 50:50 between the keto and enol form.
What reaction can acetyl CoA alone undergo in nature?
Draw the mechanism.
Acetyl CoA undergoes Claisen reactions in nature, where the keto and enol forms react to make acetoacetyl CoA.
How does nature run reductive amination?
In nature, two cofactors and an aminotransferase enzyme are used for reductive amination.
The two cofactors are called pyridoxamine and pyridoxal.
What are two common reactions that the two cofactors are used for?
- reversible synthesis of amino acids from keto acids via amination/deamination
- decarboxylation of amino acids to give amines
Draw the mechanism for the reversible synthesis of amino acids from keto acids.
How does nature’s methylation occur?
Draw the mechanism(s).
Nature’s methylation uses s-adensoyl methionine (SAM).
What are the three classes of natural products?
- Alkaloids
- Polyketides
- Terpenes
Where do alkaloids come from?
Most alkaloids come from an amino acid biosynthetic precursor. The most common amino acids used are ornithine, lysine, tryptophan, phenylalanine and tyrosine.
What are the important reactions in the biosynthesis of alkaloids?
- Decarboxylation
- Deamination of amino acids then decarboxylation
- Imine/iminium ion formation
- Mannich reaction
- Methylation
Draw curly arrows to demonstrate what the Mannich reaction is.
What are pyrrolidine alkaloids synthesised from?
Give an example of a pyrrolidine alkaloid.
Pyrrolidine alkaloids include a 5-membered N-containing ring. Most of these are from ornithine as a biosynthetic precursor. An example is hygrine.
Draw the mechanism for hygrine synthesis.
Draw the mechanism for the synthesis of tropinone from hygrine.
Where do piperidine alkaloids come from?
Give an example and draw its structure.
Most 6-membered rings in piperidine alkaloids come from lysine. One example is pseudopelletierine.
Draw the mechanism for the biosynthesis of pseudopelletierine
*here, only one amine is methylated. This shows how nature can be both regio- and stereoselective.
Where do isoquinoline alkaloids come from?
Give and example and draw its structure.
Isoquinoline alkaloids usually come from tyrosine, such as salsolinol.
Draw the mechanism for the biosynthesis of salsolinol.
The acetyl carbonyl used to form the iminium ion comes from alanine.
Where do benzoisoquinoline alkloids come from?
Give an example and draw its structure.
Benzoisoquinoline alkaloids usually come from tyrosine, such as reticuline.
Draw the mechanism for the biosynthesis of reticuline.
Where do polyketides come from?
Polyketides are formed from malonyl CoA, which in turn forms from acetyl CoA.
Draw the mechanism for the biosynthesis of malonyl CoA.
How are polyketides constructed?
Draw the mechanism and its short hand version.
Polyketides are synthesised by a multienzyme complex containing a condensing enzyme (CE) and an acyl carrier protein (ACP).
How are aromatic polyketides numbered?
What are the structural features of aromatic polyketides?
You give an OH group 1 then number around the ring.
Polyketides show multiple oxygenation groups (OH or C=O) around an aromatic ring, either in a 1,3- or a 1,3,5-pattern.
Draw the mechanism for the biosynthesis of orsellinic acid.
In the last step, the keto to enol tautomerisationis driven by the generation of full aromaticity. Usually the keto form is preferred but here it’s not.
Where do terpenes come from?
Terpenes are synthesised from mevalonic acid, which in turn comes from acetyl CoA.
Draw the mechanism for the synthesis of mevalonic acid.
What happens to mevalonic acid before it can go on to synthesis terpenes?
Nature’s leaving group, OPP, is attached to mevalonic acid. Then, mevalonic acid produces two different pyrophosphate isomers.
Draw the mechansim for the synthesis of limonene.
GPP is synthesised, which is the C10 terpene building block.
Draw the two kinds of Wagner-Meerwein hydride shifts.
Draw one kind of Wagner-Meerwein alkyl shift.
What is the C15 terpene building block?
Draw its synthesis.
FPP is the C15 terpene synthesis.
Draw curly arrows to show the conversion between cis- and trans-FPP.
Draw two different ways FPP can form C15 terpene molecules.
