Biology Unit 2 Flashcards
What is a metabolic pathway?
a metabolic pathway is an integrated series of enzyme-controlled reactions.
what is the term metabolic used to describe?
it’s used to describe all of the reactions taking place within a cell
what are the 2 types of metabolic reaction?
anabolic reactions ( build-up) and catabolic reactions (break down)
what are anabolic pathways?
anabolic pathways are a set of biosynthetic reactions inside a cell that build complex molecules from simple building blocks. these reactions require energy
what is an example of an anabolic pathway?
protein synthesis is an example of an anabolic pathway as amino acids are built into protein.
what are catabolic pathways?
catabolic pathways are a set of reactions inside a cell that breaks complex molecules into simple building blocks. These reactions release energy
what is an example of a catabolic pathways
aerobic respiration is an example of a catabolic pathway as glucose and oxygen are broken down into co2 and water
How are the 2 metabolic pathways closely linked?
the energy generated by aerobic respiration (catabolic) is used for protein synthesis (anabolic)
what are the different ways in which metabolic pathway reactions go? (3)
- be reversible
- be irreversible
- use alternative routes
what is an example of a reversible reaction?
fermentation in animals, oxygen is supplied to the cell, lactate can be converted back to pyruvate.
what is an example of an irreversible reaction?
fermentation in plant and yeast, ethanol and co2 cannot be converted back into pyruvate.
what is the importance of membranes? (4)
the cell membrane controls the flow of materials into and out of the cell. they also form the surfaces and boundaries of areas where metabolic reactions can occur. Mitochondria and chloroplast are membrane-bound organelles. They form compartments that keep metabolites close together or separated.
what is the characteristic structure of the mitochondria?(4)
the mitochondria have a double membrane(inner and outer).
the inner membrane is folded to localise metabolic activity.
-certain sites are responsible for certain chemical reactions
-metabolites are kept close to the enzymes that are required for the reactions to proceed.
what is the characteristic structure of the chloroplast?
in chloroplasts, the enzymes needed for making ATP are bound together on flattened sacs containing chlorophyll.
The Calvin cycle occurs in the fluid outside the sacs where the enzymes for the cycle are found.
what are the advantages of having compartmentalised membranes?
small compartments in the membrane allow a high surface to volume ratio which allows high concentrations of the substrate inside. This leads to a high reaction rate.
what are the molecules membrane is made up of?
proteins and phospholipids
what are the forms of protein embedded in the cell membrane?
pores, pumps and enzymes
function of pores?
large molecules depend on transport proteins which contain pores to allow them to move across the membrane. the channel allow diffusion of specific substances across the membrane
function of pumps?
act as carrier molecules that transfer specific ions across the membrane. Moving across the concentration gradient is active transport and requires ATP.
function of enzymes?
speed up the rate of biochemical reactions in the cell. i.e enzymes control the rate of metabolic pathways.
what is activation energy?
the energy required to initially break the bonds in the reactants to form an unstable compound.
what does adding enzyme to a reaction do to the activation energy?
it lowers the activation energy needed for the reaction to proceed.-meaning biochemical reactions are able to speed up rapidly and at relatively low temp. (body temp.)
why is induced fit useful for?
- ensuring the active site comes into close contact with the substrate molecules increasing the chance of a reaction taking place
what is the affinity of a molecule?
it’s the tendency for it to bind to an enzyme
whats the intensity of affinity of a substrate to its active site?
substrates have a high affinity for the active site
whats the intensity of affinity of a product after a reaction for the active site?
after a reaction. the products have a lower affinity for the active site so they separate.
what is an inhibitor?
an inhibitor is a substance that decreases the rate of enzyme controlled reaction.
what are the 3 types of inhibitors?
competitive inhibitors, non-competitive inhibitors and feedback inhibitors
what are competitive inhibitors?
they are molecules that have a similar shape to the substrate molecule and compete for the available active site on the enzyme.
how does competitive inhibitors lower reaction rate?
if the competitive inhibitors manage to bind to the active site, the active site is now blocked, substrate molecules cannot bind, reducing the reaction rate.
what way can we overcome competitive inhibitors?
increasing substrate concentration can reverse the effect of competitive inhibition
how do non-competitive inhibitors affect/ reduce reaction rate?
a non-competitive inhibitor molecule does not combine directly with the active site of the enzyme, it binds to another area. This changes the shape of the enzyme, indirectly affecting the shape of the active site and preventing the enzyme-substrate complex from being made.
how do feedback inhibitors reduce the reaction rate?
as the concentration of an end product builds up, some of it binds to the enzyme. This slows down the reactions int the pathway.
what is cellular respiration?
it’s a series of metabolic pathways that release energy from food.
what is the high energy compound that cellular respiration regenerates?
ATP (adenosine triphosphate)
what is phosphorylation?
an enzyme controlled process where a phosphate group is added to a molecule. ATP is broken down into adp+pi. the released phosphate can phosphorylate other molecules.
what are the 3 stages of cellular respiration
glycolysis, citric acid cycle, electron transport chain.
what is the location of the 3 stages of cellular respiration?
-glycolysis(cytoplasm)
-citric acid cycle (matrix (central part)of the mitochondria)
electron transport chain (inner mitochondrial membrane)
what is glycolysis?
its the breakdown of glucose into pyruvate through a series of enzyme-controlled reactions O2 is not required.
describe the process of glycolysis from glucose to pyruvate- the 2 phases.
- glucose is first converted into intermediate products. this phase is the energy investment phase and requires energy in the form of 2 ATP
- in the energy pay off stage, 4 molecules of ATP are formed. this results in a net gain of 2 molecules of ATP
what is the enzyme dehydrogenase used for in glycolysis?
they remove hydrogen ions and electrons from molecules. they are passed to the coenzyme NAD.this forms NADH
what is the citric acid cycle?
only occurs if o2 is present and is a series of dehydrogenase enzyme-controlled reactions resulting in the generation of ATP and releases CO2 and hydrogen.
what is pyruvate converted to in the citric acid cycle?
it’s converted to acetyl which combines with co-enzyme A to form acetyl co-enzyme A
what happens to the hydrogen ions and electrons from NADH that is released by citrate?
first of all the dehydrogenase enzyme takes more of the hydrogen ions and electrons, with then are passed onto NAD to form NADH. the hydrogen ions and electrons from the NADH is then passed onto the electron transport chain- 3rd and final stage of cellular respiration.
what is the electron transport chain (ETC)?
only occurs if o2 is present and used the hydrogen ions and electrons from NADH to generate ATP and form water. More specifically a series of carrier proteins attached to the inner mitochondrial membrane.
describe the process of ETC
- hydrogen ions and electrons from NADH are passed onto ETC
- the electrons are passed along the ETC, releasing energy
- the energy is used to pump hydrogen ions across the inner mitochondrial membrane
- the hydrogen ions flow through the ATP synthase protein back through the inner membrane
- the flow of hydrogen ions through ATP synthase generates ATP.
- hydrogen ions combine with the electrons and o2 ( which acts as the final hydrogen acceptor) to form water.
what happens if o2 is absent?
a process called fermentation takes place? fermentation does not generate ATP after glycolysis.
why does fermentation result in less ATP being produced compared to aerobic respiration?
it’s less efficient than aerobic respiration. fermentation does not generate ATP after glycolysis.
why does fermentation not become a problem in animal cells in terms of efficient reaction?
pyruvate is converted to lactate in a reversible reaction. so if o2 were to be available then lactate could be converted back to pyruvate and then the process of aerobic respiration could continue on as normal
why does fermentation become a problem in plant and yeast cells in terms of efficient reaction?
pyruvate is converted to ethanol and co2 in an irreversible reaction. even if o2 were to become available the ethanol and co2 would not be able to be converted back to pyruvate to proceed onto the process of aerobic respiration.
what is metabolic rate?
the quanitiy of energy consumed by an organism per unit of time
state the 3 varieties metabolic rate can be measured as?
- the volume of oxygen consumed per unit of time
- the volume of carbon dioxide produced per unit of time
- the heat produced per unit of time
what 4 things can be used to measure metabolic rate?
- respirometer
- calorimeter
- co2 probe
- o2 probe
how do respirometers work?
co2 produced by respiration is absorbed by sodium hydrogen pellets. as o2 is used up, the liquid level will rise. this is measured to see the volume of o2 used per unit of time.
why do birds and mammals have different circulatory systems to reptiles, amphibians and fish?
birds and mammals have a higher metabolic rate than reptiles, amphibians and fish. to support these different metabolic rates, these organisms have different circulatory systems as they require more efficient delivery of oxygen to their cells.
what are the 2 main components of the circulatory system?
- the heart
- blood vessels
- blood
What do we mean by organisms with high metabolic rate require efficient delivery of oxygen to cells?
this means that they need transport systems that can efficiently deliver large supplies of oxygen to respiring cells
what are the features of the circulatory system in mammals and birds?
- birds and mammals have a complete double circulatory system featuring:
- 2 atria
- 2 ventricles
- chambers separated by a septum
- blood moves through the heart twice in each circuit
why does the complete double circulatory system enable for a more efficient oxygen delivery to cells?
in complete double systems, there is no mixing of deoxygenated and oxygenated blood. blood can be pumped at a higher pressure meaning efficient delivery.
why is the complete double circulatory system the most advanced in maintaining metabolic rates? higher
it enables endothermic (warmer blood) vertebrae to get larger volumes of oxygen to respiring tissues. these tissues then release heat to keep the body warm. these features allow the organism to maintain a higher metabolic rate
what are the features of the circulatory system in amphibians and reptiles?
- amphibians and most reptiles have an incomplete double circulatory system featuring:
- 2 atria
- 1 ventricle
why is the circulatory system in amphibians and reptiles described as incomplete?
- the right atrium receives deoxygenated blood returning from the body tissue’s capillary bed.
- the left atrium receives oxygenated blood from the capillary bed in the lungs
- the blood from both atria is passed into the single ventricle and mixes before being pumped back out to the body
- due to this it is described as incomplete as there is only one ventricle and some mixing of oxygenated and deoxygenated blood occurs