Biological Molecules Unit 1 Flashcards
What’s a monomer
Monomers are the smaller units from which larger molecules are made
What’s a polymer
Molecules made from a large number of monomers joined together
What are the types of monomers?
Monosaccharides, amino acids and nucleotides
What’s an isomer
Same molecular formula different structure
What are monosaccharides
Monomers of carbohydrates
Examples of monosaccharides
Glucose, fructose and galactose
Glucose exists as 2 isomers
Alpha and beta
What are disaccharides?
Made of 2 monosaccharides. Joined by a glycoisidic bond. Formed via a condensation reaction.
Examples of disaccharides
Maltose, lactose, sucrose
What’s a condensation reaction?
Joining 2 molecules together and forms a chemical bond and releases water.
What’s a hydrolysis reaction?
Breaks chemical bond between monomers and uses water
Types of polysaccharides
Starch, cellulose, glycogen
What’s starch created from
2 polymers of alpha glucose.
Where’s starch found
Starch grains inside plant cells
What’s the function of starch and glycogen?
Insoluble store of glucose
Wheres glycogen found
In muscle and liver cells on animals
Structure of glycogen
Highly branched molecule Has 1-4 glycosidic bonds and even more 1-6 glycosidic bonds than amylopectin. Can be compacted easily. [ fit large amount of glucose in small space) is a polysaccharide of alpha gluc9se
What’s cellulose formed from?
Beta glucose
Where’s cellulose found
Cell wall of plant cells
What’s function of cellulose
Provid3s structural strength to cell wall
Structure of cellulose
1-4 glycosidic bonds. Long straight chains line up parallel to eachother. Held in place by many hydrogen bonds. This is a fibril. Provides structural strength due to the number of hydrogen bonds. - individual hydrogen bond is weak
How does the structure of starch lead to its function?
Helical so compact
Branched structure increases surface area for rapid hydrolysis back to glucose,so glucose is (easily) released for Respiration;.
Large (molecule) so cannot leave cell/cross
cell-surface membrane
Insoluble - won’t affect water potential
How does the structure of cellulose lead to its function?
Many hydrogen bonds provide collective strength.
Insoluble - won’t affect water potential
How does the structure of glycogen lead to the function?
- Insoluble (in water), so doesn’t affect water
potential; - Branched helix, so makes molecule compact;
- Polymer of (α-)glucose so provides glucose for respiration;
- Branched so more ends for fast breakdown
- Large so can’t cross the cell membrane
What are the 2 groups of lipids?
Triglycerides and phospholipids
How are triglycerides made?
Involves 3 seperate condensation reactions with 1 glycerol. Forms 3 ester bonds and 3 molecules of water (since its removed to be bonded)
What are R groups
Fatty acids which can be saturated or unsaturated
What’s the difference between saturated and unsaturated fatty acids?
Saturated fatty acids only have single bonds between carbons. Whilst unsaturated fatty acids have atleast one double bond between carbons
Properties of triglycerides (how structure results in properties)
1) Energy storage- due to large ratio of energy- storing carbon- hydrogen bonds compared to the number of carbon atoms, a lot of energy is stored in the molecule
2) due to the high ratio of hydrogen to oxygen atoms they act as a metabolic water source. Triglycerides can release water if they are oxididised. This is essential of animals in the desert ,such as camels.
3) triglycerides do not affect water potential and osmosis. This is because they are large and hydrophobic, making them insoluble in water.
4) lipids have a relatively low mass. Therefore a lot can be stored without increasing the mass and preventing movement
What’s the structure of phospholipids?
Made of a glycerol molecule two fatty acid chains and a phosphate group. (Attached to the glycerol)
The 2 fatty acids also bond to the glycerol via 2 condensation reactions resulting in 2 ester bonds
What happens when phospholipids are put into water?
Arrange themselves in 2 layer structure- phospholipid bilayer. Have 2 charged regions so they’re polar, The heads are hydrophilic so they’re attracted to water whilst tails are hydrophobic so they are repelled from water.
This forms a phospholipid bilayer membrane structure which makes up the plasma membrane around the cells
What are proteins made up of?
Amino acids. Amino group, carboxylic group, R( variable group) hydrogen.
Describe how amino acids are joined together to form a dipeptide
Condensation reaction, water is removed. Peptide bond forms between OH of carboxyl and H of amine group
What is a protein?
Polymer, made up of the monomer amino acids
What is the primary structure of a protein?
Order of amino acids in a polypeptide chain. This is a polymer.
(All joined by several condensation reactions the polypeptide chain holds the amino acids together this is extra info)
What is the secondary structure of amino acids?
The sequence of amino acids causes parts of a protein molecule to bend in a helic shapes or fold in b pleated sheets. Secondary structure held in place by hydrogen bonds.
Whats the location of the hydrogen bonds in the secondary stage?
Hydrogen bonds form between the C=O groups of the carboxyl group of one amino acid and the H in the amine group of another amino acid
What’s the tertiary structure of amino acids?
The further folding of the secondary structure to form a unique 3D shape. Held in place by ionic hydrogen and disulphide bonds
Wats the location of the ionic and disulfide bonds in the tertiary structure of amino acids?
The ionic and disulfide bonds form between the R groups of different amino acids. Disulphide bonds only sometimes occur, as there must be a sulfur in the R groups for this bond to occur (S—-S) (disulphide bond that occurs between 2 different sulfurs)
What’s the quaternary structure of amino acids?
A protein made up of more than one polypeptide chain.
What does it mean if a protein denatured?
If a protein is denatured, this means that bonds which hold the tertiary and secondary structure in shape break, and therefore the unique 3D shape is lost.(eg enzymes lose their unique active site shape)
Whys the sequence of amino acids the key importance in the definition ?
(The exact sequence of amino acids is what determines the ionic, hydrogen and disulfide bonds form in a tertiary structure and where those bonds form determines the unique 3d shape. )So, even if one amino acid in the sequence is different then it will cause the ionic/hydrogen/ disulfide bonds to form in a different location. This results in a different 3D shape
Enzymes will have diff shaped active site(will be non functionaling)
Carrier proteins will have a different shaped binding site (molecules no longer complementary and cannot be transported across membranes
What might cause a change to amino acid sequence?
Mutations. Change in dna sequence might code for a different amino acid sequence and therefore,primary structure changes
What’s the role of hydrogen bonds, ionic bonds, and disulfide Bridges in the structure of proteins?
The position of the bond, which is determined by the amino acid sequence, determines how the protein folds. Therefore, the position of the bond determines the final 3D shape and the function of the protein,
What are enzymes?
Tertiary structure proteins which catalyse reactions.
Whilst enzymes are Relatively large molecules, it’s only a small part of the enzymes that attaches to a substrate to catalyse a reaction. This site is known as active site
What do enzymes do. And models
When enzymes attach to the substrate they can lower the activation energy needed for the reaction to occur, and therefore speed up the reaction
Lock and key model and induced fit model
What’s the lock andkey model
This model suggests that the enzyme is like a lock and that the substrate is like a key that fits into it due to their complementarity in shape.
It suggests that the enzyme acitive site is a fixed shape and that due to random collisions the substrate can collide and attach to the enzyme. This forms an enzyme substrate complex
Once the enzyme substrate complex has formed the charged groups within the active site are though to distort the substrate and therefore lower the activation energy. The products are then released, and the enzyme active site is empty and ready to be reused
How do non competitive inhibitors affect enzymes
Non competitive inhibitors attacu to the allosteric site.this causes the active site to change shape. No longer complementary in shape less enzyme substrate complexes form and can’t be overcome by increasing substrate
What does dna do
Deoxyribonucleic acid (DNA) codes for the sequence of amino acids in the primary structure of a protein, which in turn determines the final 3d shape structure and function of protein.
It’s essential therefore that cells contain a copy of genetic code and that it can be passed onto new cells without being damaged
The dna polymer is a double helix
What is RNA and function
Is a polymer of a nucleotide formed of a ribose, a nitrogenous base and a phosphate group.
The nutrogenous bases in RNA are adenine, guanine, cytosine, uracil
The function of the RNA is to copy and transfer the genetic code from DNA in the nucleus to the ribosomes. Some RNA is combined with proteins to create ribosomes
What’s MRNA
Messenger RNA is a single stranded straight chained molecule, made of bases which are read in triplets called codons
It’s role is to carry the genetic code out of the nucleus to the ribosome for the formation of 1 polypeptide. 1 codon codes for 1 amino acid
mRNA short because its only the length of one gene
What’s TRNA
Transfer RNA found in the cytoplasm. It’s single stranded but folded to create a shape that looks like a cloverleaf. This shwp3 ishelf by hydrogen bonds.
The function of tRNA is to attacg one of the 20 amino acids and transfers this amino acid to the ribosome to create the polypeptide chain. Specific amino acids attach to specific tRNA molecules and thusis determined by 3 bases found on the tRNA which are complementary to the 3 bases on mRNA
These are called the anticodon because they’re complementary to the codon on mRNA
What’s RRNA
Ribosomal RNA is the type of RNA that makes up the bulk of ribosomes.
What’s the biomedical test for a reducing sugar
Benedicts reagent.
1) Add excess Benedicts to the test solution
2) Boil the mixture
3) If a reducing sugar is present the solution will change from blue to green, yellow, orange brick red
What do reducing sugars mean
It means they can donate electrons to other molecules to reduce them
Whas the biochemical test for a non reducing sugar
Sucrose is a non reducing sugar. Negative result with benedicts reagent.
1) add benedicts regeant and heat if it remains blue the following steps
2) add hydrochloric acid and heat it
3) neutralise the acid with sodium hydroxide
4) add benedicts reagent and boil.
5) if the solution now turns red then a non reducing sugar was initially present
Biochemical test for starch
Iodine dissolved in potassium iodide reacts with starch, resulting in a colour change from orange - brown to blue black
Qualitative test accurate conc can’t be determined.