biological molecules Flashcards

1
Q

what does polar and dipolar mean

A

polar- dosent have a charge. dipolar- 2 different charges

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2
Q

why are water molecules polar?

A

it has a partial negative charge on one side (oxygen) , and a partially positive on the other (hydrogen). this causes an unevenly distributed charge

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3
Q

how do hydrogen bonds occur between water molecules

A

the partially positive hydrogen end of one water molecule attracts towards the partially negative oxygen end of another molecule

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4
Q

water as a solvent

A
  • it dissolves ions and polar molecules to transport them to cells that need them for biological reactions
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5
Q

water as a transport mediant

A

polar substances dissolve and are easily transported in water around animals or plants

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6
Q

what is cohesion? why is it important

A

cohesion- water molecules bonding together this allows them to transport substances

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7
Q

what is adhesion? why is it important

A

adhesion- water molecules bonding to other polar substances, this forms a stream in materials (Capillary action) where water can flow up tubes

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8
Q

water as a coolant

A

water is a good buffer to temp changes because of the high specific heat capacity, a lot of energy is needed to break the large volume of hydrogen bonds. water also has a high latent heat of vaporisation, due to the large volume of hydrogen bonds alot of energy is needed to transform liquid water to vapour

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9
Q

water as a habitat

A

provides a stable environment for aquatic life as it buffers temp changes
cohesion provides surface tension to water, this provides habitat for organisms
ice is less dense than liquid water because there are larger spaces between water molecules causing ice to float on water

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10
Q

how is surface tension caused

A

caused by molecules being cohesive, at the surface there are less water molecules to hydrogen bonds, this causes them to be more compact

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11
Q

examples of water as a solvent for eukaryotic and prokaryotic cells

A

-chemical reactions in the cytoplasm

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12
Q

examples of water as a transport mediant for eukaryotic and prokaryotic cells

A

-in humans, important ions can dissolve in the water in blood and then transported around the body

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13
Q

examples of water as a coolant for eukaryotic and prokaryotic cells

A

shc- internal temps of animals and plants should remain constant, this is important so enzymes dont denature during chemical reactions. high latent heat of vaporisation- evaporation provides a cooling effect for animals and plants temps eg. sweating

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14
Q

examples of water as a habitat for eukaryotic and prokaryotic cells

A

this provides an insulating layer for organisms ontop of water, the water below dosent freeze so organisms under water dont freeze

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15
Q

monomer, polymer, macromolecule

A

monomer- small basic molecular units
polymer- large complex molecules composed of long chain molecules joined together
macromolecule- complex molecules with relatively large molecular mass

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16
Q

condensation reaction

A

when two molecules are joined together to form a larger more complex molecule with the loss of water, occurs between two facing hydroxyl groups (OH)

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17
Q

hydrolysis reaction

A

a large molecule is split into smaller sections bye breaking a bond using a molecule of water, adding hydrogen to one section and a hydroxyl group to the other

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18
Q

what are the chemical elements that make up carbohydrates

A

carbon (C), hydrogen (H) and oxygen (O)

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19
Q

what is a monosacchride and what are they

A

the monomers that make up carbohydrates.
glucose, fructose, galactose

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20
Q

what is the difference between a hexose and pentose monosacchride

A

hexose is a monosacchride with six carbon atoms, pentose has five carbon atoms

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21
Q

what is a disacchride

A

when two monosacchrides join together

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22
Q

glucose properties

A

glucose is a hexose monosacchride with two forms, alpha and beta. glucose’s structure makes it soluble so it can easily be transported. its chemical bonds contain alot of energy that can be released through respiration

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23
Q

what is the difference between alpha and beta glucose

A

alpha- the hydroxyl group is below carbon 1 whereas beta’s hydroxyl group is above carbon 1

24
Q

go and draw glucose and ribose ring structure

A

check flashcards

25
what bonds are monosacchrides formed by
glycosidic bonds
26
what happens during synthesis (condensation)
one hydrogen atom on a monosacchride bonds to a hydroxyl group on the other releasing a molecule of water
27
what happens during reverse synthesis (hydrolysis)
a molecule of water reacts with the glycosidic bond, breaking it apart
28
what is the breakdown of sucrose
disacchride where alpha glucose and fructose joined by a glycosidic 1-4 bond, in a condensation reaction
29
breakdown of lactose
disacchride where alpha or beta glucose joined with galactose by a glycosidic 1-4 bond by condesation reaction
30
breakdown of maltose
disacchride two alpha glucose molecules are joined by a 1-4 glycosidic bond through a condensation reaction
31
what is a polysacchride and examples
more than two monosacchrides joined together eg. starch, glycogen and cellulose
32
structure of starch
mixture of two polysacchrides of alpha glucose, amylose and amylopectin
33
structural differences between amylose and amylopectin
amylose is a long, unbrached chain of alpha glucose, the angles of the glycosidic bongs give it a coiled structure which makes it more compact so it can store more starch. amylopectin is a long unbranched chain of alpha glucose, it has side branches which allow the molecule to get at the glycosidic bonds easily, this means glucose can be released quickly
34
how does starch's structure relate to living organisms
starch is the main energy storage material in plants, cells get energy from glucose and plants store excess glucose as starch, starch is insoluble in water so it dosent cause water to enter the cells by osmosis so this dosent affect the water potential this makes it good for storage.
35
glycogen structure
long branched chain of alpha glucose, joined by 1-4-1-6 glycosidic bond
36
how does glycogen's structure relate to living organisms
main storage material in animals, animals store excess glucose as glycogen. it has alot of branches which means that stored glucose can be released quickly this is important for animals. it is also very compact which is good for storage
37
structure of cellulose
long unbranched chains of beta glucose, they form straight cellulose chains which are linked together by hydrogen bonds to form strong fibres called microfibrils.
38
how does cellulose's structure relate to living organisms
cellulose contains alot of microfibrules joined together by high volume of hydrogen bonds. this means is required alot of energy to break the bonds so the cellulose keeps the cell rigid and strong
39
chemical elements that make up lipids
C,H,O
40
what are fatty acids
fatty acids are lipids made up of a carboxyl group, hydrogen group and methyl group
41
structure of saturated fatty acids
saturated fatty acid tails are straight so they can be tightly packed leading to solid animal fats
42
structure of unsaturated fatty acids
the inclusion of double bonds in the fatty acids tails means that the chain is 'kinked' so they cant link closely together, this makes the lipid more fluid than oils
43
breakdown of triglyceride
made up of 3 fatty acid chains, 1 molecile of glycerol held together by 3 ester bonds which are formed through 3 condensation reactions + 3 h2o
44
why are triglycerides excellent energy storage molecules
-glycerol can be converted to glucose -chemical energy in carbon- carbon and carbon-hydrogen bonds
45
what is esterification
the chemical process which occurs between two facing hydroxyl groups for energy storage
46
other functions of triglycerides
- thermal insulation to reduce heat loss - cushioning to protect vital organs - buoyancy for aquatic animals (like whales) - electrical insulation, myelin sheath
47
stucture of phoshpholipids
phosphate, glycerol, 2 fattu acid chains, 2 ester bonds
48
function of phospholipids
main components of biological molecules, eg cell membrane structure phospholipid heads are hydrophilic and tails are hydrophobic, they form double layer with heads facing out centre is hydrophilic so water can’t easily pass through it, membrane acts as a barrier
49
cholesterol functions
helps regulate fluidity of cell membrane by interacting with phospholipid bilayer cholesterol is small and flat so it can fit in between the molecules in the membrane at high temps, they bind to hydrophilic tails in phospholipids, causing them to pack more tightly and reduces fluidity at low temps, cholesterol prevents phospholipids from packing too tightly together so increases membrane fluidity
50
general structure of amino acid
a carboxyl group and amino acid attached to a carbon atom. carbon, oxygen, hydrogen, nitrogen, sometimes sulfur C,H,O,N,S
51
what are the chemical elements that make up proteins
proteins are made up of one or more polypeptides, C O H N and sometimes S
52
describe the synthesis and breakdown of dipeptide and polypeptides
amino acids are linked together by peptide bonds to form dipeptides and polypeptides, a molecule of water is released during the reaction- condensation. the reverse adds a molecule of water to break the peptide bond- hydrolysis reaction
53
what are the levels of protein structure
primary- sequence of amino acids in polypeptide chain secondary structure- alpha helix or beta pleated sheets caused by hydrogen bonds between a.a tertiary- makes 3D shape established through interactions of R groups of a.a, held together by hydrogen, ionic, disulphide or hydrophilic/phobic quaternary- multiple polypeptide chains, prosthetic group
54
what are the roles of ionic, hydrogen, disulphide and hydrophilic/phobic bonds in proteins
ionic- attractions between negative and positive charges in R groups hydrogen- weak bonds that form between positively charged hydrogen atoms and negatively charged atoms in R groups disulphide- strongest, covalent bond between two sulphurs, resistant to high temps hydro..- when phobic R groups are close together they clump so philic R groups are pushed outside which affects how protein folds up into final structure
55
recall the structure and function of globular and conjugated proteins
globular proteins are round and compact, they’re soluble and easily transported in fluids because the philic and phobic interactions in tertiary structure cause the philic R groups to be pushed on outside of molecule. conjugated protein- protein with a non protein group attached
56
examples of structure and cut ion with haemoglobin, insulin and amylase for globular proteins
haemoglobin- carries oxygen around body in red blood cells, it’s a conjugated protein- the non protein part is a prosthetic group. each four polypeptide chains has a prosthetic group called haem, it contains iron which oxygen binds too. insulin- hormone secreted in pancreas, regulates blood glucose level. insulin molecule consists of two polypeptide chains held together by disulphide bonds. when in pancreas, six molecules bind together to form globular protein amylase- enzyme that catalyses the breakdown of starch in digestive system. it’s made of single chain of amino acids, secondary structure contains both pleated sheets and helix
57
recall the properties and functions of fibrous proteins including collagen keratin and elastin
fibrous proteins- tough and rope shaped, insoluble and strong, structural proteins are fairly unreactive. collagen- found in animal connective tissues,strong, minerals can bind to protein to increase rigidity keratin- found in external structures of animals, flexible or hard and tough elastin- found in elastic connective tissue, allows tissues to return to original shape when stretched