Bioinformatics Flashcards

1
Q

What is bioinformatics?

A

A scientific field that uses computer science and biology to study biological data

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2
Q

What is bioinformatics simply used for?

A

To store, analyse, and share information about DNA, amino acids, and other biological sequences

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3
Q

The 3 components of bioinformatics

A
  1. The development of new algorithms + statistics for assessing the relationship among large sets of biological data
  2. Application of these tools for the analysis and the interpretation of the various biological data.
  3. The development of database of database for an efficient storage, access and management of various biological informations
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4
Q

How does bioinformatics work?

A

Derives knowledge from computer analysis of biological data → consists of the information stored in the genetic code & experimental results + scientific literature

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5
Q

The 3 branches of bioinformatics

A
  1. Genomics
  2. Transcriptomics
  3. Proteomics
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6
Q

Proteomics

A

The sequencing of amino acids in protein, determining its 3D structure and relating it to the function of the protein

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7
Q

Transcriptomics

A

The study of transcriptome which includes the whole set of RNA molecules in one or a population of biological cells for a given set of environmental circumstances

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8
Q

Genomics

A

Extensive analysis of nucleic acids through molecular biology
techniques before the data is ready for processing by computers

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9
Q

cDNA

A

Obtained by reverse transcription of an RNA molecule

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10
Q

Sequence alignment

A

A way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences.

E.g, the identification of Covid-19 variants

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11
Q

Pairwise sequence alignment

A

Comparing 2 sequences to identify regions of similarity

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12
Q

Multiple sequence alignment

A

Aligning multiple sequences to study evolutionary relationships between

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13
Q

Tools and Algorithms for Sequence Analysis

A
  • BLAST (Basic Local Alignment Search Tool) → Rapid sequence comparison
  • Clustal Omega - Multiple sequences alignment
  • Hidden Markov Models (HMM) → Pattern recognition in sequences
  • FASTQ & FASTA Formats → File formats for storing sequence data
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14
Q

Genomic database

A

An online collection that stores and allows access to large amounts of genetic data, including DNA sequences, gene annotations, and variations, enabling researchers to compare and analyse genomic information across different studies and organisms.

E.g, researchers using GenBank to track influenza virus mutations for vaccine development

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15
Q

Protein function prediction

A

The computational method of determining the biological role of a protein based on its amino acid sequence — comparison to known proteins within similar sequences or structural features

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16
Q

Gene Ontology (GO) analysis

A

A method used in genome annotation and protein function prediction

17
Q

Genome annotation

A

Identifying gene locations and functional elements within a genome

18
Q

Protein Function Prediction

A

Using computational models to determine unknown protein functions

19
Q

Methods for Protein Function Prediction

A
  1. Sequence similarity search
  2. Domain analysis
  3. Machine learning approaches
  4. Structural prediction
20
Q

Sequence similarity search

A

The comparison of a protein sequence to a database of known proteins within similar sequences to identify homologous proteins with known functions

21
Q

Domain analysis

A

The identification of conserved protein domains within a sequence that can indicate specific functions

22
Q

Machine learning approaches

A

Using algorithms trained on large datasets of protein sequences and functional; annotation s to predict functions for new proteins

23
Q

Structural prediction

A

The prediction of the 3D structure of a protein based ion its sequence, which can provide insights into its function

24
Q

Understanding biological pathways

A

Identifying genes involved in specific cellular processes by analysing their predicted functions

25
Q

Drug discovery

A

Identifying potential drug targets based on protein function predictions

  • Identifying drug targets through genomics & virtual screening of drug compounds
26
Q

Personalised medicine

A

Analysing individual genomes to predict disease susceptibility based on genetic variations

*Tailoring treatments based on an individual’s genetic profile

27
Q

Evolutionary studies

A

Studying the evolution of protein functions by comparing sequences across different species

28
Q

Data privacy

A

Protecting genetic information from missuse

29
Q

Genetic discrimination

A

Ethical concerns in employment and insurance