Bioenergetics Flashcards
Bioenergetics
Study of the transformation of energy in living organisms
Metabolism
Sum of all chemical reactions in the body
Catabolic
Breakdown/ degradation of molecules
Examples catabolic
Proteolysis, lipolysis, glycolysis, glycogenolysis
Anabolic
synthesis of new molecule
Examples of anabolic
protein synthesis, lipogenesis, gluconeogenesis, glycogenesis
How are enzymes pathways regulated?
• substrate supply - food & other compounds
• hormonal control - with on/off pathways & alter enzyme activity
• allosteric control - speed or slow enzyme activity
ATP
- Fuels body
- used metabolic reactions
- all stores used up in 2-4 seconds
How do we generate ATP?
• metabolic reactions rely on enzymes
• enzymes speedup reactions
• enzyme lower activation energy, initial energy required for the reaction to take place LG
Lock & Ky
binding site has complementary shape to substrate(s)
Induced fit models
contact between part of the binding site and the substrate induces a change in shape of the active site to bind to the substrate
Enzyme activity can be affected by
• Substrate concentration
• pH
• Temperature
• Enzyme concentration
Atom
Building block
Element
pure substance which cannot be broken down into a simple substance by a chemical reaction
Proton
+ charge
In nucleus
Neutron
Neutral chase
in nucleus
Electron
Negative charged
Outer shell
Ion
atom becomes an ion when it is charged has been altered by losing or gaining an election
Anion
Negative charged ion
Cations
Positive charged ions
Molecule
contains two or more atoms chemically joined together
Compound
molecule composed of atoms from 2 or more different elements
Ionic bonds
Ionic bonds
• giving an electron to another atom/receiving an electron from another atom
• depends on electronegativity
Covalent bond
sharing electrons with another atom
• shared electrons between atoms fill shells
Order of strongest bond
Covalent > ionic > hydrogen
Redox reaction
If one molecule is oxidized, the other is reduced
When we generate large amounts of ATP, oxygen accepts electrons
Cytoplasm
• fluid in cell
• cytosol is fluid portion & energy generating reaction take place
Mitochondria
• organelle - site of respiration
• generates ATP
• Exercise increases the size of the mitochondria in the cell and also the number it contains
Cell membrane
The gatekeeper of the cell!
• Surrounds the whole cells
• Lipid bilayer – phospholipid, glycolipid, cholesterol
How does phosphocreatine system synthesise ATP?
- Breakdown of ATP to ADP activates creatine kinase
- enzyme catalyses reaction that adds pi group
- can resynthesises PCr quickly
Oxygen deficit
- Due to rapid need for energy
- energy comes from non-aerobic sources
PCr depletion
Only have finite stores hence why people take creatine supplements
Which metabolic pathways are activated during very high intensity exercise?
- Phosphocreatine
- anaerobic glycolysis
What is the PREDOMINANT pathway activated for a given task; these pathways NEVER work in isolation
Glycolysis
The metabolic pathways activated during intermittent exercise such as team sports
- Glycolysis
- krebs
- ETC
possible causes of fatigue during high-intensity during high intensity and intermittent exercise
stores of PCr limited
Increase in ADP inhibits
glycolysis
breakdown of glucose to produce energy
what hormones regulate glycolysis
insulin(activator) and glucagon(inhibitor)
What happens in anaerobic conditions
Build up in pyruvate increases lactic acid production
How much ATP does glycolysis produce
2 ATP (net)
How much NADH is produced in glycolysis
2
glycogenesis
formation of new glycogen
addition of glucose molecules together to form branches
glycogenolysis
breakdown of glycogen
break of glucose molecule
muscle stores of glycogen
2% by weight is glycogen
largest store in body
released as glucose-6-phosphate
liver stores of glycogen
10% by weight is glycogen
controls blood glucose levels
phosphorlysis
breaking up of glycogen molecule by adding phosphoric group
glycogen
can only be stored as branches of glucose polymer
having several branches means that they be broken down for glucose molecule
Krebs cycle
eight reactions in mitochondria
is an aerobic process
function of Krebs cycle
- oxidation pathway for carbs, lipids, proteins
-generate energy or intermediates for ETC - provides several precursor molecules for other metabolic pathways
link reaction
converts pyruvate to acetyl coenzyme A
When is the Krebs cycle activated?
when oxygen is present
PDH activates it
what enzyme regulates links reaction
PDH
When is PDH activated
exercise
PDH phosphatase
when is PDH inhibited
PDH kinase
exercise
What is the starting molecule I Krebs cycle and what do you end up with
Starts- acetyl coenzyme A
Ends- Oxaloacetate
How much ATP produced in one cycle
1
NADH and FADH2 production in Krebs cycles
NADH-3
FADH2- 1
used in ETC
ETC
redox reaction
substrate level phosphorylation
generate ATP from both glycolysis and Krebs
oxidative phosphorylation
process of using high energy electron carries to generate ATP
how is ETC regulated
Hormonal or allosteric regulation absent
increase in NADH, ADP, Pi
How much ATP is produced in ETC
38
Where does ETC happen?
mitochondria
What are the roles of NADH and FADH2 in ETC?
electrons from coenzyme used for redox reaction
How does the protein complex on ETC function- where is the electron affinity greatest?
electrochemical gradient that leads to the creation of ATP
final electron acceptor
how is ETC regulated?
by the proton gradient between the inner membrane and the mitochondrial matrix
What types of exercise utilise the ETC?
low-intensity long endurance
characteristics of protein showing sigmoidal kinetics
- composed of 2 or more sub units
- subunits can exist in 2 different shapes
-first substate binds to site and increases affinity for 2nd substrate
Allosteric protein
binding of the negative effector to its ligand binding site prevents the enzyme’s active site from becoming accessible to the substrate
Positive modulator
binding of the positive effector to its ligand binding site makes the enzyme’s active site more accessible to the substrate
Gluconeogenesis
takes place in the liver
several substrate covered to glucose
When is Gluconeogenesis activated?
After 30-40 minutes of exercise when energy in the body is low because glucose hasn’t been consumed
What tissue does Gluconeogenesis occur in?
Liver
How many irreversible reactions in glycolysis does gluconeogenesis have to overcome?
3 reaction
What substrates can be used in Gluconeogenesis?
Lactate, amino acid( glutamine & alanine) glycerol
pentose phosphate pathway
can be used to oxidase glucose
no ATP required
NADPH formed
What are the end products of pentose phosphate pathway?
phosphate and pentose
how is pentose phosphate pathway regulated?
redox state of the NADP couple
what is the free amino acid pool and what feeds into it?
- substrates of protein synthesis and the products of protein breakdown
- food and protein degradation
What is transamination?
enables all AA to be formed
transferring amine group to a keto acid to for AA
What is oxidative deamination
removing the amine group from a newly AA resulting is transamation
What is the urea cycle?
Any AA body doesn’t used are removed in liver
degrading AA convert to ammonia
ammonia converted to urea in the liver
excreted through kidney
protein synthesis
formation of new proteins
protein degradation
breakdown of proteins into AA’s
how much protein do we lose a day?
35-100g
Why is protein synthesis important for athletes ?
Muscle hypertrophy
help with resistance training
transcription
copy information encoded in a gene and duplicate it
translation
form the amino acids chain, rely on genetic code
codons
anti codons
tRNA
codons- RNA triplet codes
anti codons - complementary codon on tRNA
tRNA- carry amino acid
What are the 2 pathway for protein degradation?
lysosomal pathway and ubiquitin pathway
Saturated fatty acids
no carbon double bonds
straight, tightly packed
solid at room temp
unsaturated fatty acids
at least 1 carbon double bond
less tightly packed
liquid at room temp
mono and poly unsaturated
mono- one double bond
poly- more than one
lipoproteins
lipids surrounded by protein
after digestion used to transport lipids around the body to different tissues
lipolysis
breakdown of TAG into 3 fatty acids and 1 glycerol
each fatty acid broken down by different hormone
regulated by enzymes
What activates lipolysis during exercise?
adrenaline
What are the different hormones that break down fatty acids?
ATGL
HSL
MGL
When is ATP generation with lipids more than carbs?
all the time but takes longer
Beta-oxidation
carbon chains of fatty acid removed
obtain acetyl coenzyme A
occurs in mitochondria matrix
requires oxygen
What does malonyl CoA do and why is it revenant?
Is an enzyme that joins acyl and carnitine together
important regulator of CAT1 activity
Fatty acid synthesis
Acetyl CoA synthesised to form malonyl CoA
by Acetyl CoA breaks into OAA and citrates
citrate then breaks into OAA and CoA
CoA converted to maloynl CoA
What molecule is an important regulator of FA synthesis and FA degradation
ACC (Acetyl-CoA carboxylase
Under what circumstances would FA be promoted?
After eating due to an increase in fatty acids and increase in insulin released
how are triglycerides formed?
insulin promotes the uptake of fatty acids and glucose into adipose tissue
in adipose tissue glucose covered with glycerol and 3 fatty acids form ester bonds with glycerol
What are ketone bodies?
the fuel source for the brain when glucose low
used when high fatty acids are in use
e.g acetoacetic acid, 3-hydroxybutyric, acetone
When are ketone bodies increased in the body?
during hunger
reduced carb availability
starvation
prolonged exercise
hormones
the chemical messenger that regulates and coordinate activity within the body
Endocrine hormones
produced in one tissue
travel through circulation to reach the target cell
Paracrine hormones
produced in one cell
travels short distance to neighbouring target cells
Autocrine hormones
produced in cell which is also target cell