Biochemistry-Principles and Diseases Flashcards
Adenosine Deaminase Deficiency- Description
Excess ATP and dATP imbalances nucleotide pool via feedback inhibition of Ribonucleotide Reductase. Prevents DNA synthesis and thus decreases lymphocyte count.
One of the major causes of autosomal recessive SCID.
Lesch-Nyhan Syndrome - Description, findings, treatments
Defective purine salvage due to absent HGPRT enzyme which converts hypoxanthine to IMP and guanine to GMP. Results in excess uric acid and de novo purine synthesis. X-linked recessive
Findings: intellectual disability, self-mutilation, aggression, hyperuricemia, gout, dystonia
Treatment: Allopurinol or Febuxostat
*HGPRT = Hyperuricemia, Gout, Pissed-Off, Retardation, dsyTonia
DNA Repair Mechanisms - Nucleotide Excision Repair
Single Strand. Repairs large, bulky, helix-distorting lesions. Occurs in G1 phase. Defective in Xeroderma Pigmentosum.
DNA Repair Mechanisms- Base Excision Repair
Single Strand. Base-specific glycosylases removes altered bases and creates AP site which are excised by AP endonuclease and lyase. DNA Poly fills in the gap. Active throughout the cell cycle. Important for repair of toxic/sponatneous deamination.
DNA Repair Mechanisms- Mismatch Repair
Single Strand. Newly synthesized strand is recognized (How?) and mismatched nucleotides are removed. Occurs predominantly in G2 phase. Defective in HNPCC.
DNA Repair Mechanisms- Nonhomologous End Joining
Double Strand. Brings together 2 ends of DNA fragments to repair double-stranded breaks. No requirement for homology. Some DNA may be lost. Deficient in Ataxia Telangiectasia and Franconi Anemia.
RNA Polymerases- Names and products
RNA Poly 1 makes rRNA- ‘r = rampant, most numerous’
RNA Poly II makes mRNA- ‘m = massive, largest’
RNA Poly III makes tRNA- ‘t= tiny, smallest’
Where does N-linked glycosylation take place within the cell?
Rough Endoplasmic Reticulum. This structure forms Nissl Bodies in neurons .
Where does O-linked glycosylation take place within the cell?
Golgi. Also site where mannose-6-p is added to proteins to traffic to lysosomes.
I-Cell Disease - Description and findings
Inclusion cell disease. Inherited lysosomal storage disease, in which the golgi fails to phosphorylate manose residues. Results in decreased mannose-6-p on glycoproteins, which are then secreted extracellularly.
Findings: Coarse facies, clouded corneas, restricted joint movement, high plasma levels of lysosomal protiens. Often fatal in childhood.
Vesicular trafficking proteins- 3 types and their function
COPI - Retrograde: Golgi–> cisGolgi–> ER
COPII - Anteriograde: ER–> cisGolgi
Clatherin- Variable: transGolgi–> Lysosomes / PM–>endosomes
Name 6 drugs that act on microtubules
Mebendazole - antihelmenthic Griseofulvin - antifungal Cochicine - antigout Vincristine/Vinblastine - anticancer Paclitaxel -anticancer
Microtubules Get Constricted Very Poorly
Kartagener Syndrome / Primary Ciliary Dyskenesia- Description and signs
Immotile cilia die to a dynein arm defect. Results in male and female infertility. Increased risk of ectopic pregnancy.
Findings: bronchiectasis, recurrent sinusitis, situs inversus (dextrocardia), the latter is not found in CF.
Collagen- Mnemonic
Be (So Totally) Cool Read Books
Collagen Type I: Bone, Skin, Tendon
Collagen Type II: Cartilage
Collagen Type III: Reticulin (found in blood vessels)
Collagen Type IV: Basement membrane
Type I Collagen- Description and pathology
Most common, found in Bone, Skin and Tendon, Involved in LATE wound repair.
Osteogenesis Imperfecta type I results from Collagen I deficiency.
Type II Collagen- Description
Found in cartilage, vitreous body nucleus pulposus.
Think CarTWOlage = Type II Collagen
Type III Collagen- Description and pathology
Reticulin- Blood Vessels and Granulation Tissues (early wound healing). skin, uterus, fetal tissue,
Deficient in Ehlers-Danlos Syndrome (vascular type, uncommon).
Think Type ‘ThreE D’
Type IV Collagen- Description and pathology
Basement membrane , basal lamina, lens.
Think Type IV ‘under the floor’
Defective in Alport Syndrome, targeted by autoantibodies in Goodpasture Syndrome.
Osteogenesis Imperfecta-Description and findings
Common form is autosomal dominant with decreased production of otherwise normal Type I collagen,
Findings: multiple fractures with minimal trauma, blue sclerae, hearing loss (abnormal ossicles), dental imperfections d/t lack of dentin.
Ehlers-Danlos Syndrome- Description and findings
Faulty collagen synthesis. Multiple subtypes. Hypermobility Subtype is most common. Classical Subtype is due to mutation in Type V Collagen. Uncommon Vascular Subtype is due to deficient Type III Collagen.
Findings: Hyperextensible skin, hypermobile joints, and bleeding tendency. May also be associated with joint dislocations, berry aneurysms, aortic aneurysms, and organ rupture.
Menkes Disease- Description and findings
X-linked recessive connective tissue disease caused by impaired copper absorption and transport due to defective Menkes protein (ATP74) “kink” hair growth, growth retardation and hypotonia.
McCune-Albright Syndrome- Description and findings
Due to mutation effecting G-protein signaling. Lethal if mutation occurs before fertilization but survivable in patients with mosaicism.
Findings: unilateral café-au-lait spots, polyostotic fibrous dysplasia, precocious puberty, multiple endocrine abnormalities.
When should you consider the occurrence of ‘Uniparental Disomy’ in evaluation of a patient?
When a patient manifests symptoms of a recessive disorder when only one biological parent is a carrier.
Prader-Willi Syndrome- Description and findings
Maternal imprinting: Maternal gene is silent, Paternal gene is deleted/mutated. (25% of cases are due to maternal uniparental disomy)
Findings: hyperphagia, obesity, intellectual disability, hypogonadism, and hypertonia.
Think: “Prader-willi = deletion of Paternal gene”
Angelman Syndrome- Description and findings
Paternal imprinting: Paternal gene is silent and Maternal gene is mutated/deleted. (5% of cases due to paternal uniparental disomy)
Findings: Inappropriate laughter, seizures, ataxia and severe intellectual disability. “Happy Puppet”
Think: “angelMan’s = deletion of Maternal gene”
Duchenne Muscular Dystrophy- Description and findings
X-linked disorder due to frameshift mutation in the dystrophin gene. Impairs muscle regeneration.
Findings: Weakness beginning in pelvic girdle and progressing superiorly. Psuedohypertophy of calf muscles due to fibrofatty replacement of muscle. Pts may show ‘Gower maneuver.’ Onset before 5 yrs of age. Death due to dilated cardiomyopathy common. Labs show elevated CPK and aldolase. Confirm with muscle biopsy.
Cystic Fibrosis- Description, findings and treatments
Autosomal recessive defects in the CFTR gene on Ch 7. Common is deltaF508. Defects cause increased intracellular Cl- which in turn causes increased absorption of Na+ to counter. This causes H20 resorption and abnormally thick mucus plugs in the airways and GI tract. Increased Cl- in sweat test is diagnostic. (CFTR reabsorbs Cl- in sweat glands)
Findings: Recurrent pulmonary infections, chronic bronchitis and bronchiectasis in upper airways(!), pancreatic insufficiency, malabsorption with steatorrhea, and nasal polyps. Infertility in males, subfertility in females, and fat-soluble vitamin insufficiency. Meconium ileus in newborns(!)
Treatment: N-acetylcystein to loosen mucus plugs, DNAse to clear leukocytic debris.
Becker Muscular Dystrophy- Description
X-linked disorder similar to DMD but less severe. Due to non-frameshift insertions into dystrophin gene, leaving it partially functional. Presents in adolescence or early adulthood.
Myotonic Dystrophy Type I- Description and findings
Autosomal dominant disorder caused by CTG trinucleotide repeat expansion in the DMPK gene which leads to abnormal expression of myotonin protein kinase.
Findings: Myotonia, muscle wasting, cataracts, testicular atrophy, frontal balding, arrhythmia.
Think: “My Tonia, My Testicles, My Ticker, My Toupee”
Fragile X Syndrome- Description and findings
X-linked defect affecting the methylation and expression of the FMR1 gene. The 2nd most common cause of mental retardation after Down syndrome. Trinucleotide repeat disorder. (CGG)
Findings: post pubertal macroochidism, long face with a large jaw, large everted ears, autism, mitral valve prolaps.
Think: “fragile X = eXtra large testes, jaw, ears”
Name the four Trinucleotide Repeat diseases and the repeat sequence unique to each.
Fragile X syndrome = (CGG)
Friedriech ataxia = (GAA)
Huntington Disease = (CAG)
Myotonic Distrophy = (CTG)
Think: X-Girlfriend’s First Aid Helped Ace My Test