Biochemistry: Metabolism Flashcards

1
Q

Site of metabolism:

Mitochondria

A
  • Fatty acid oxidation (B-oxidation)
  • Acetyl CoA production
  • TCA cycle
  • oxidative phosphorylation
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2
Q

Site of metabolism:

Cytoplasm

A
  • Glycolysis
  • gatty acid synthesis
  • HMP shunt
  • protein synthesis (RER)
  • steroid synthesis (SER)
  • Cholesterol Synthesis
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3
Q

Site of metabolism

Mitochondria & Cytoplasm

A
  • Heme synthesis
  • Urea cycle
  • Gluconeogenesis
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4
Q

Kinase

A

Uses ATP to add phosphate group onto substrate

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5
Q

phosphorylase

A

Adds inorganic phosphate onto substrate without ATP

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6
Q

Phosphatase

A

removes phosphate group from substrate

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7
Q

Dehydrogenase

A

catalyzes oxidation- reduction reactions

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8
Q

Hydroxylase

A

adds hydroxyl group (OH) onto substrate

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9
Q

Carboxylase

A

Transfers CO2 groups with help of biotin

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10
Q

Mutase

A

relocates a functional group within a molecule

(Methylmalonyl CoA mutase)

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11
Q

Rate Determining Enzyme:

Glycolysis

A

Phosphofructokinase 1 (PFK-1)

  • +
    • AMP
    • Fru 2,6 bisphosphate
    • ATP
    • Citrate
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12
Q

Rate Determining Enzyme:

Gluconeogenesis

A

Fructose 1,6, Bisphosphatase

  • +
    • ATP
    • Acetyl CoA
  • -
    • AMP
    • Fru 2,6 bisphosphate
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13
Q

Rate Determining Enzyme:

TCA

A

Isocitrate dehydrogenase

  • +
    • ADP
  • -
    • ATP
    • NADH
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14
Q

Rate Determining Enzyme:

Glycogenesis

A

Glycogen Synthase

  • +
    • Glucose 6 phosphate
    • insulin
    • Cortisol
  • -
    • Epinephrine
    • Glucagon
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15
Q

Rate Determining Enzyme:

Glycogenolysis

A

Glycogen Phosphorylase

  • +
    • Epinephrine
    • glucagon
    • AMP
  • -
    • G6P
    • insulin
    • ATP
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16
Q

Rate Determining Enzyme:

HMP shunt

A

Glucose 6 phosphate dehydrogenase (G6PD)

    • NADP+
    • NADPH
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17
Q

Rate Determining Enzyme:

De novo pyrimidine Synthesis

A

Carbamoyl phosphate synthetase II

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18
Q

Rate Determining Enzyme:

De novo purine synthesis

A

Glutamine phosphoribosylpyrophosphate (PRPP) amindotransferase

    • AMP
    • inosine monophosphate (IMP)
    • GMP
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19
Q

Rate Determining Enzyme:

Urea Cycle

A

Carbamoyl Phosphate synthetase I

    • N-acetylglutamate
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20
Q

Rate Determining Enzyme:

Fatty acid synthesis

A

Acetyl CoA Carboxylase (ACC)

  • +
    • insulin
    • citrate
  • -
    • Glucagon
    • palmitoyl-CoA
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21
Q

Rate Determining Enzyme:

Fatty Acid oxidation

A

Carnitine acyltransferase I

    • malonyl coA
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22
Q

Rate Determining Enzyme:

Ketogenesis

A

HMG-CoA Synthase

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23
Q

Rate Determining Enzyme:

Cholesterol Synthesis

A

HMG-CoA reductase

    • insulin
    • thyroxine
  • -
    • Glucagon
    • cholesterol
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24
Q

ATP production

A
  • Aerobic metabolism of glucose
    • 32 net ATP via Malate-aspartate shuttle
    • 30 net ATP via glycerol 3 phosphate shuttle
  • Anaerobic glycolysis produces only 2 net ATP per glucose molecule
  • ATP hydrolysisi can be coupled to energetically unfavorable reactions
  • Arsenic causes glycolysis to produce net 0 ATP
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25
Activated carrier: ATP
Phosphoryl groups
26
Activated carrier: NADH, HADPH, FADH2
electrons
27
Activated carrier: CoA, lipoamide
Acyl groups
28
Activated carrier: Biotin
Co2
29
Activated carrier: Tetrahydrofolate
1 carbon unit
30
Activated carrier: SAM
CH3 groups
31
Activated carrier: TPP
Aldehydes
32
Universal electron acceptors
Nicotinamides (NAD+ and NADP+) and flavin (FAD+) * NAD is generally used in catabolic processes to carry reduing equivalencts away as NADH * NADPH is used to anabolic processes ( steroid and fatty acid synthesis) as a supply of reducing equivalents * product of HMP shunt * repiratory burst * Cytochrome P450 system * Glutathione reductase
33
Hexokinase: * Tissues * Km * Vmax * induced by insulin? * Feedback inhibition? * Gene mutation in MODY?
catalyzes phosphorylation of glucose to yield G6P is the 1st step of glycolysis in most tissue * not liver or B- cells in pancreas * Lower Km ( increase affinity) * Vmax lower (decrease capacity) * Not induced by insulin * Feedback inhibited by G6P * No gene mutation associated with maturity onset diabetes
34
Glucokinase: * Tissues * Km * Vmax * induced by insulin? * Feedback inhibition? * Gene mutation in MODY?
Phosphorylation of glucose to G6P ( glycolysis) * Liver, B-cells in pancreas * Km: higher (lower affinity) * Vm: higher ( increase capacity) * Induced by insulin * no feedback inhibition by G6P * associated with gene mutation in maturity-onset diabetes of the young
35
Glycolysis: Net equation
Cytoplasm * Glucose + 2Pi +2ADP + NAD+ --\> * 2 pyruvate + 2ATP + 2 NADH +2H2O + 2H+
36
Glycolysis: Reactions that require ATP
* Glucose--\> Glucose 6 phosphate * Hexokinase/ glucokinase * Glu 6P (-) hexokinase * Fru 6P (-) glucokinase * Fructose 6P--\> Fru 1, 6BP * Phosphofructokinase 1 ( rate limiting) * ATP (-) * AMP (+) * citrate (-) * Fru 2,6 BP (+)
37
Glycolysis: Reactions that produce ATP
* 1,3 BPG \<--\> 3 PG * Phosphoglycerate kinase * Phosphoenolpyruvate --\> pyruvate * pyruvate kinase * ATP (-) * alanine (-) * Fru 1,6 BP (+)
38
Regulation by Fru 2,BP: * Fasting * Fed
* Fructose 6 Phosphate \<--\> Fru 2,6 BP * Fed: Phosphofructokinase 2 * Fasting: Fructose bisphosphatase-2 * Fru 6P --\> Fru 1,6BP * PFK-1 * (+) PFK2 * glycolysis * Fru 1,6BP --\> Fru 6P * FBPase-1 * Gluconeogenesis * Fasting state * increased glucagon--\> incr.cAMP --\> incr. PKA --\> Incr. FBPase-2 --\> decr. PFK-2 * Less glycolysis and more gluconeogenesis * Fed state * Incr. insulin --\> decr. cAMP --\> decr. PKA --\> decr. FBPase-2 --\> incr. PFK-2 * more glycolysis * less gluconeogenesis
39
Pyruvate dehydrogenase complex * Reaction * Co-factors * activation
* Pyruvate + NAD+ + CoA --\> acetyl coA + CO2 +NADH * Co-factors * pyrophosphate (B1, thiamine, TPP) * FAD (B2, Riboflavin) * NAD (B3, Niacin) * CoA (B5, pantothenate) * Lipoic acid (inhibited by arsenic) * Activated by exercise * Increases NAD+/NADH ratio * increase ADP * Increase Ca2+
40
Pyruvate dehydrogenase deficiency
Cuases a buildup of pyruvate that gets shunted to lactate (via LDH) and alanine (via ALT) * Neurologic defects * lactic acidosis * increase serum alanine starting in infancy * Tx: increase intake of ketogenic nutrients * high fat or increase lysine, leucine
41
Pyruvate metabolism * Metabolic pathways * co-factors
* Alanine * alanine aminot transferase * B6 * carries amino groups from liver to muscle * Oxaloacetate * Pyruvate carboxylase * biotine * replenish TCA cycle or used in gluconeogenesis * Acetyl CoA * Pyruvate dehydrogenase * B1, B2, B3, B5, lipoic acid * glycolysis to TCA cycle * Lactate * lactic acid dehydrogenase * B3 * anaerobic glycolysis
42
TCA Cycle
* Produces: 3 NADH, 1 FADH2, 2CO2, 1 GTP per acetyl CoA * 10 ATP per acetyle CoA * occurs in the mitochondria * a-ketoglutarate dehydrogenase requires * B1, B2, B3, B5, lipoic acid * Citrate Is Kreb's Starting Substrate For Making Oxaloacetate * Citrate (Citrate synthase) * Isocitrate * a- ketoglutarate ( isocitrate dehydrogenase) * Succinyl CoA (a-KG dehydrogenase) * Succinate * Fumarate * Malate * Oxaloacetate
43
Electron Transport Chain
NADH electrons form glycolysis enter mitochondria via the malate-aspartate or G3P shuttle * Complex I: NADH--\> NAD+ * Complex II: FADH2 --\> FAD * succinate dehydrogenase * FADH2 electrons are transfered to complex II * Complex III: CoQ * Complex IV: 1/2 +2H+ --\> H2O * Complex V: ADP +Pi --\> ATP
44
Electron Transport Chain ATP production
* 1 NADH --\> 2.5 ATP * 1 FADH2 --\> 1.5 ATP
45
Electron Chain Inhibitors
* Complex I: Rotenone * Complex III: Antimycin A * Complex IV: Cyanide, CO * Complex V: Oligomycin
46
Oxidative phosphorylation poisons
* Electron transport inhibitors: * directly inhibit electron transport * causing decrease in proton gradient and block of ATP synthesis * ATP synthase inhibitors * directly inhibit ATP synthase causing an increase in proton gradient * No ATP is produced because electron transport stops * Uncoupling agents * increas permability of membrane * causes a decrease in proton gradient * increase in O2 consumption * electron transport continues * produces heat * 2,4 Dinitrophenol, aspirin, thermogenin
47
Gluconeogenesis: Irreversible Enzymes
* Pyruvate carboxylase * mitochrondria * Pyruvate --\> oxaloacetate * requires biotin, ATP * activated by Acetyl coA * Phosphoenolpyruvate carboxykinase * Cytosol * Oxaloacetate --\> phosphoenolpyruvate * requires GTP * Fructose 1,6, bisphosphatase * cytosol * Fruc 1,6BP --\> Fru 6P * Citrate (+) * Fru 2,6 (-) * Glucose 6 phosphatase * ER * G6P --\> glucose
48
Gluconeogenesis
* Occurs primarily in liver to maintain euglycemia during fasting * deficiency of key gluconeogenic enzymes cause hypoglycemia * Odd chain fatty acid yields 1 propionyl CoA during metabolism which can enter TCA, undergo gluconeogenesis and serve as glucose source
49
HMP shunt | (pentose phosphate pathway)
* Provides a source of NADPH from G6P * NADPH required for reductive reactions * glutathione reduction in RBC * Fatty acid and cholesterol biosynthesis * yields ribose for nucleotide synthesis and glycolytic intermediates * occurs in cytoplasm * No ATP used or produced * Sites * lactaing mammary glands * liver * adrenal cortex ( site of fatty acid or steroid synthesis) * RBCs
50
HMP shunt: Oxidative reaction
Irreversible * Glucose 6P --\> --\> NADPH * Glu 6P dehydrogenase * Rate limiting * requires NADP+ * Products: CO + 2NADPH +Ribulose 5P Reversible * Ribulose 5 P \<--\> Ribose 5 P * Phosphopentose isomerase, transketolase * Requires B1 * Products: RIbose 5P, G3P, F6P
51
Respiratory Burst | (Oxidative Burst)
* Activation of phagocyte NADPH oxidase (neutrophils, monocytes) * utilizes O2 as substrate * rapid release of ROS * Phagolysosome * NADPH oxidase * Superoxide dismutase * myeloperoxidase * Glutathionine peroxidase ( requires selenium) * Glutathionine reductase (requires selenium) * G6PD
52
Chronic Granulomatous Disease
* Deficiency in NADPH oxidase * can use H2O2 generated by invading organisms and convert it to ROS * increase risk for infections by catalase (+) species * S.aureus, Aspergillus capapble of neutralizing their own H2O2 * phagocytes have no ROS for fighting infections
53
Respiratory burst (oxidative phosphorylation) Reactions
* O2 * O2- (Superoxide) [_NADPH oxidase]_ * H202 _[Superoxide dismutase_] * HOCl (hypochlorite) [_Myeloperoxidase]​_ _​_ Bacterial catalase * H2O2--\> H20 + O2 Glutathione peroxidase * H202 --\> H20 * GSH (reduced) --\> GSSG
54
G6PD dehydrogenase deficiency
* NADPH is necessary to keep glutathione reduced * Glutathione detoxifies free radicals and peroxides * decreased in NADPH in RBC= hemolytic anemia * oxidizing agents: fava beans, sulfonamides, primaquine, anti-TB drugs * infection can also precipitate hemolysis * X-linked recessive * increased malarial resistance * Heinz bodies= oxidized Hemoglobin precipitated in RBC * Bite cells: phagocytc removal of Heinz bodies by splenic macrophages
55
Essential Fructosuria
* defect in fructokinase * autosomal recessive * benign, asymptomatic condition * Sxs: fructose appears in urine and blood
56
Fructose intolerance
* Hereditary deficiency of Aldolase B * autosomal recessive * Fructose -1-P accumulates causing decrease in available phosphate * inhibits glycogenolysis and gluconeogenesis * Sxs: present with consumption of fruit, juice, honey * hypoglycemia, jaundice, cirrhosis, vomiting * Urine dipstick will be negative * reducing sugar can be detected in urine * Tx: decrease intake of fructose and sucrose
57
Metabolism of Fructose
* Fructose * Fru 1 P [Fructokinase] * Dihydroxyacetone-P [aldolase B] * Glyceraldehyde [aldolase B] * Glyceraldehyde 3P [Triose kinase] * Glyceraldehyde 3p --\> glycolysis
58
Galactokinase Deficiency
Hereditary deficiency of galactokinase * Galacititol accumulates if galactose is present * autosomal recessive * Sxs: galactose appears in blood and urine, infantile cateracts * May present intially as failure to track objects or develop a social smile
59
Classic Glactosemia
Absence of galactose-1-P uridyltransferase * Galactose 1p --\> Glucose 1 P * [Uridyltransferase] * autosomal recessive * accumulation of toxic substances * galacititol accummulates in lens of eye * Sxs: failure to thrive, jaundice, hepatosplenomegaly, infantile cateracts, intellectual disability * Tx: exclude galactose and lactose from diet * Can lead to neonatal sepsis in neonates
60
Sorbitol
* alternative method of trapping glucose in cell is to convert it to its alcohol counterpart, sorbitol * some tissues convert sorbitol to fructose _[sorbitol dehydrogenase_] * Tissues with insufficienct enzyme can accumulate sorbitol causing osmotic damage * cataracts, retinopathy, peripheral neuropathy in chronic hyperglycemia * high levels of galataose also results in conversion to galactitol [_aldose reductase]_
61
Lactase Deficiency
Insufficiency lactase enzyme * Dietary lactose intolerance * lactase digests lactose into glucose and galactose * Primary: age dependant decline after childhood * Secondary: loss of brush border due to gastroenteritis (rotovirus), autoimmune disease * Congenital: rare due to defective genes * Stool: decreased pH * Breath: increase hydrogen content * intestinal biopsy reveals normal mucosa in patients with hereditary lactose intolerance * FIndings: bloating, flatulence, osmotic diarrhea * tx: avoid dairy products, lactase pills,
62
Essential Amino Acids
* Glucogenic: * Methionine (Met) * Valine (val) * Histidine (His) * Glucogenic/ketogenic * isoleucine (Ile) * phenylalanine (Phe) * Threonine (thr) * Tryptophan (Trp) * Ketogenic * Leucine (Leu) * Lysine (lys)
63
Acidic Amino acids
* Aspartic acid (Asp) * Glutamic acid (glu) * negatively charged at body pH
64
Basic Amino Acids
* Arginine (arg)-- most basic * Lysine (lys) * Histidine (his)-- no charge at body pH * Arg and His are required during periods of growth * Arg and lys are increased in histones which bind negatively charged DNA
65
Urea Cycle
amino acid catabolism * Forms pyruvate, acetyl-coA for metabolic fuel * Ordinarily, Careless Crappers Are Also Frivolous about Urination * Ornithine + Carbamoyl phosphate * Citrulline [_ornithine transcarbamylase_] * + Aspartate--\> Argininosuccinate [_Argininosusccinate synthetase]_ * Fumarate + Arginine [Argininosuccinase] * Urea + Ornithine [Arginase] * Carbamoyl phosphate synthetase * makes carbamoyl phosphate * requires N-acetylglutamate
66
Transport of Ammonia
Muscle * Amino acids (NH3) --\> a- ketoacids * A-ketoglutarate--\> Glutamate (NH3) * Glutamate (NH3)--\> a-ketoglutarate * Pyruvate--\> alanine (NH3) Liver * alanine (NH3) --\> pyruvate * a-ketoglutarate --\> glutamate (NH3) --\> urea (NH3) * Pyruvate --\> glucose (transported to muscle) Muscle * Glucose --\> pyruvate--\> lactate (Cori cycle)
67
Hyperammonemia
Results in excess NH4+ * depletes a-ketoglutarate * inhibits TCA cycle * Tx: limit protein in diet * Benzoate or pehnylbutyrate can be given to decrease ammonia levels * Lactulose can acidify GI tract and trap NH4+ for excretion * Sxs: tremor (asterixis, slurring of speech, somnolence, vomiting, cerebral edema, blurring of vision)
68
N-acetylgutamate Deficiency
* Required co-factor for carbamoyl phosphate synthetase I in Urea cycle * Increased ornithine in urea cyce suggests hereditary deficiency
69
Ornithine Transcarbamylase deficiency
* Most common urea cycle disorder * x-linked * inability to eliminated ammonia * excess carbamoyl phosphate is converted to orotic acid * Findings: increased orotic acid in blood and urine, decreased BUN, sx of hyperammonia * no megaloblastic anemia (vs orotic aciduria)
70
71
Amino Acid derivatives: Phenylalanine
* Thyrosine (BH4) * Thyroxine * --\> Dopa (BH4) * Melanine * --\> Dopamine (B6) * --\> NE (vitamin C) * --\> Epi (SAM)
72
Amino Acid derivatives: Tryptophan
* Niacin (B6) * NAD/NADP+ * Serotonin (BH4, B6) * Melatonin
73
Amino Acid derivatives: Histidine
* Histamine (B6)
74
Amino Acid derivatives: Glycine
* Porphyrin (B6) * Heme
75
Amino Acid derivatives: Glutamate
* GABA (B6) * Glutathionine
76
Amino Acid derivatives: Arginine
* Creatinine * Urea * Nitric Oxide (BH4)
77
Phenylketouria
Decreased phenylalanine hydroxylase or tetrahydrobiopterin (BH4) * Increase in phenylalanine lees to excess phenylketones in urine * phenylketones ( phenylacetate, phenylactate, phenylpyruvate) * Autosomal recessive * screened for 2-3 days after birth ( maternal enzyme during birth) * Disorder of aromatic amino acid metabolism--\> musty body odor * Findings: intellectual disability, growth retardation, seizures, fair skin, eczema, musty body ordor * Must avoid aspartame (contains phenylalanine) * Tx: decrease phenylalanine and increase tyrosine in diet
78
Maternal PKU
lack of proper dietary therapy during pregnancy * Infant findings * microcephaly * intellectural disability * growth retardation * congenital heart defects
79
Alkaptouria | (Ochronosis)
Congenital deficiency of homogentisate oxidase in the degradative pathway of tyrosine into fumarate * Autosomal recessive * Benign disease * Findings * dark connective tissue, brown pigmented sclera, urine turns black on prolonged exposure to air * may have debilitating arthralgias (homogentisic acid toxic to cartilage)
80
Homocysttinuria
Excess homocysteine * Findings * increase in homocysteine in urine, intellectual disability, osteoporosis, tall stature, kyphosis, lens subluxation, thrombosis, atherosclerosis (stroke, MI) * Homocysteine--\> Methionine * Homocysteine methyltransferase & B12 * Homocysteine --\> Cystathionine--\> Cysteine * Cystathionine synthase & B6 Types * Cysthathionine Synthase deficiency * tx: decrease methionine, increase cysteine, increase B12 and folate in diet * Decreased affinity of cysthathionine synthase for pyridoxal phosphate * Increase B6 and cysteine in diet * Homocysteine methyltransferase deficiency * tx: increase methionine in diet
81
Cystinuria
Hereditary defect of renal PCT and intestinal amino acid transported for Cysteine, Ornithine, Lysine and Arginine (COLA) * Excess cystine in urine can lead to precpitatinof hexagonal cystine stones * Autosomal recessive * Urinary cyanide-nitroprusside test is diagnostic * Tx: * Urinary alkalizination (potassium citrate, acetazolamide) * Chelating agents increase solubility of cystine stones * Good hydration *
82
Maple Syrup Urine disease
Blocked degradation of brached amino acids (Isoleucine Leucine, Valine) * Dereased alpha-ketoacid dehydrogenase * increases alpha-ketoacid in blood * Autosomal recessive * Urine smells like burnt sugar/ maple syrup * Tx: restriction of leucine, isoleucine, valine in diet
83
Glycogen regulation
Glycogen --\> glucose * Glycogen phosphorylase Glucose --\> Glycogen * Glycogen synthase Regulators * Glucagon: binds glucagon R (liver) * increase cAMP --\> PKA * Activates Glycogen Phosphorylase Kinase * Activates Glycogen phosphorylase * Epi: Binds Beta receptors (liver, muscle) * increase cAMP--\> PKA * activates glycogen phosphorylase kinase * activates glycogen phosphorylase * Epi: binds alpha- receptors (liver) * increase Ca release from ER * activates glycogen phosphorylase kianse * activates glycogen phosphorylase * Insulin: Binds tyrosine kinase dimer R (liver, muscle) * activates Glycogen Synthase * inhibited by PKA * Activates protein phosphatase ( inhibits glycogen Phosphorylase)
84
Glycogen
* Structure: * branches have a (1,6) bonds * Linkages have a (1,4) bonds * Skeletal muscle * Glycogen undergoes glycogenolysis * glucose 1 P--\> glucose 6P ( exercise) * Hepatocytes * Glycogen is stored and undergoes glycogenolysis to maintain blood sugars * Glycogen phosphorylase cleaves Glu1P residues off until 4 remain (limit dextrin) * 4-alpha-glucanotransferase (debranching enzyme) mvoes three Glu1P from one branch to the linkage * A-1,6 glucosidase cleaves off last Glu1P on branch
85
Glycogen Storage Diseases
* von Gierke disease ( Type I) * Pompe disease ( Type II) * Cori Disease (Type III) * McArdle disease ( Type IV)
86
Von Gierke Disease
* Accumulation of glycogen in cells * Severe fasting glucose, increase glycogen in liver, increase blood lactate, hepatomegaly * Deficiency in Glucose 6 phosphatase * Autosomal recessive * Tx: Frequent oral glucose/ cornstarch, avoid fructose and galactose
87
Pompe Disease
* Accumulation of glycogen * Cardiomyopathy * leads to early death * Deficiency: lysosomal a 1,4, glucosidase ( acid maltase-- degradation of glycogen in lysosome) * Autosomal recessive
88
Cori Disease
* Glycogen storage disease * Milder form of von Gierke sxs ( fasting hypoglycemia, increase glycogen in liver, normal blood lactate levels) * Deficiency: Debranching enzyme ( a 1,6 glucosidase) * Autosomal recessive * Gluconeogenesis is intact
89
McArdle Disease
* Glycogen storage disease * increase glycogen in muscle but can't break it down * muscle cramps. myoglobinuria (red urine) with strenuous exercise, arrhythmia from electrolyte abnormalities * Deficiency: skeletal muscle glycogen phosphorylase * Autosomal recessive
90
Lysosomal Storage Disease
Caused by deficiency of lysosomal enzymes and leads to accumulation of abnormal metabolites Sphingolipidoses * Fabry disease * Gaucher disease * Niemann-Pick disease * Tay-Sachs disease * Krabbe disease * Metachromatic leukodystrophy Mucopolysaccharidoses * Hurler syndrome * Hunter syndrome
91
Fabry Disease
* Lysosomal storage disease * Peripheral neuropathy of hands/ feet, angiokeratoma, cardiovascular/ renal disease * Deficiency: Alpha-galactosidase A * Accumulated substrate: Cermide trihexoside * X-linked Recessive
92
Gaucher disease
* Lysosomal Storage disease * Hepatosplenomegaly, pancytopenia, aseptic necrosis of femur, bone crieses * Gaucher cells ( lipid laden macrophage that resembles crumpled tissue paper) * Deficiency: Glucocerebrosidase ( B-glucosidase) * Accumulated substrate: Glucocerebroside * Tx: recombinant glucocerebrosidase * Autosomal recessive
93
Niemann-Pick disease
* Lysosomal Storage disease * Progressive neurodegeneration, hepatosplenomegaly, "cherry-red spot" on macula * foam cells (lipid laden macrophages) * Deficiency: Sphingomyelinase * Accumulated substrate: Sphongomyelin * Autosomal recessive
94
Tay Sachs Disease
* Lysosomal storage disease * progressive degeneration, developmental delay, cherry-red spot on macula, lysosomes with onion skin * no hepatosplenomegaly ( vs. Niemann-pick) * Deficiency: Hexoaminidase A * Accumulated substrate: GM2 ganglioside * Autosomal recessive
95
Krabbe Diseas
* Lysosomal Storage disease * Peripheral neuropathy, developmental delay, optic atrophy, globoid cells * Deficiency: Galactocerebrosidase * Accumulated substrate: glalactocerebroside, psychosine * Autosomal recessive
96
Metachromatic leukodystrophy
* Lysosomal storage disease * Cenral and peripheral demyelination with ataxia, dementia * Deficiency: Arylsulfatase A * Accumulated substrate: Serebroside sulfate * Autosomal Recessive
97
Hurler Syndrome
* Lysosomal storage disease * Developmental delay, gargoylism, airway obstruction, corneal clouding, hepatosplenomegaly * Deficiency: a-L-iduronidase * Accumulated substrate: Heparan sulfate, dermatan sulfate * Autosomal recessive
98
Hunter Syndrome
* Lysosomal Storage disease * Mild Hurler sxs: devo delay, gargoylism, airway obstruction, heptosplenomegaly, with aggressive behavior * Deficiency: Iduronate sulfatase * Accumulated substrate: Heparan Sulfate, dermatan sulfate * X-linked recessive
99
Carnitine Deficiency
* Long chain fatty acid degradation requires carnitine-dependant transport into mitchondrial matrix * Deficiency: inability to transport LCFA into mitochondria resulting in toxic accumulation * Causes weakness, hypotonia, hypoketotic hypoglycemia
100
Acyl CoA dehydrogenase deficiency
* Increase dicarboxylic acids * decrease glucose and ketones * decreased acyl-coA--\> decrease fasting glucose
101
Long Chain Fatty Acids Synthesis
* Citrate (citrate shuttle: mito --\> cyto) * Acetyl-coA ( ATP citrate lyase) * Malonyl Co-A * Fatty acid synthesis ( Palmitate)
102
Long chain FA degradation
* Fatty acid + CoA * Acetyl CoA ( Fatty acid CoA Synthetase) * Carnitine Shuttle ( Cyto to mitochondria) * Beta- oxidation of acyl CoA to acetyl CoA groups * Ketone bodies * TCA cycle
103
Ketone Bodies
* Liver * Fatty acids and amino acids are metabolized to acetoacetate and B-hydroxybutyrate * breath smells like acetone ( fruity) * Urine test does not detect B-hydroxybutyrate * Prolonged starvation, diabetic ketoacidosis * oxaloacetate is depleted for gluconeogenesis * Alcoholism * excess NADH shunts oxaloacetate to malate * Leads to build of acetyl-CoA * shunts glucose and FFA to production of ketone bodies
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Fasting and Starvation
* Fed state * Glycolysis and aerobic respiration * _Insulin_ stimulates storage of lipids, proteins, fats * Fasting (in between meals) * Hepatic glycogenolysis * Hepatic gluconeogenesis * Adipose release of FFA * _Glucagon, adrenaline_ stimulates use of fuel reserves * Starvation (1-3 days) * Hepatic glycogenolysis * Adipose release FFA * Muscle and liver shift fuel use from glucose to FFA * Hepatic gluconeogenesis from tissue lactate and alanine & from adipose tissue glyerol and propionyl coA (odd chain FA) * Glycogen reserves depleted after 1 day * Starvation after day 3 * Adipose stores (ketone bodies) become main source of energy for brain * after depletion, vital protein degradation occurs leading to organ failure and death
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Cholesterol Synthesis
* Rate limiting step: HMG-CoA reductase * induced by insulin * HMG-CoA --\> mevalonate * 2/3 of plasma cholesterol is esterified by lecithin-cholesterol acyltransferase (LCAT) * Statin competitively and reversibly inhibit HMG-CoA reductase
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Lipid Transport
* Dietary fat & cholesterol absorbed from intestine * Chylomicrons transport lipids * LDL: lipoprotein lipase degrades TG circulating in chylomicrons to FFA and remnants * FFA * is stored in adipose * take up by peripheral tissues with LDL Receptors * Chylomicron remnants * take up by liver * Liver synthesizes VLDL ( delivery to tissues) * LPL degrades TG in VLDL to form FFA and IDL * IDL is degraded by Hepatic Lipase (TG) to LDL * IDL is take up by hepatic LDL R
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Cholesterol Transport
* Liver/ intestine make nascent HDL * LCAT catalyzes the esterification of cholesterol to mature HDL * Cholesterol ester transfer protein (CETP) transfers cholesterol esters to VLDL, IDL, LDL
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Apolipoproteins
* E: mediates remnant uptake * chylomicrons, chylomicron remnant, VLDL, IDL, HDL * AI: activates LCAT * chylomicron, VLDL, HDL * CII: Lipoprotein lipase cofactor * Chylomicrons, VLDL, HDL * B48: mediates chylomicron secretion * Chylomicron, chylomicron remnant * B100: binds LDL receptor * VLDL, IDL, LDL
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Lipoprotein functions
* Composed of cholesterol, TG, phospholipids * LDL: transport cholesterol from liver to tissues * HDL: transport cholesterol from periphery to liver
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Chylomicron
* apolipoproteins: E, AI, CII, B48 * delievers TG to peripheral tissues * delievers choelsterol to liver in form of chylomicron remnants * secreted by intestinal epithelial cells
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VLDL
* Apolipoproteins: E, CII, B100 * Delievers hepatic TG to peripheral tissues * Secreted by the liver
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IDL
* Apolipoproteins: E, B100 * Formed in the degradation of VLDL * Delivers TG and cholesterol to liver
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LDL
* apolipoproteins: B100 * delivers hepatic cholesterol to peripheral tissues * formed by hepatic lipase modification of IDL in peripheral tissue * taken up by cells via receptor mediated endocytosis
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HDL
* Apoplipoproteins: E, A1, CII * mediates reverse cholesterol transport from periphery to liver * acts as repository for apoC and ApoE ( for chylomicron and VLDL metabolism) * Secreted from liver and intestine * alcohol increase synthesis
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Hyper chylomicronemia Type I familial dyslipidemia
* Deficiency: Lipoprotein Lipase or altered CII * Autosomal recessive * increased: chylomicrons, TG, cholesterol * causes pancreatitis, hepatosplenomegaly, eruptive/ pruritic xanthoma
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Familial Hypercholeterolemia Type IIA familal dyslipidemia
* absent or defective LDL receptor * Increased: Cholesterol, LDL * Autosomal Dominant * Accelerated atherosclerosis * may have MI before age 20 * tendon (achilles) xanthoma * corneal arcus
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Hyper Triglyceridemia Familial Dyslipidemia Type IV
* Hepatic overproduction of VLDL * Increased: VLDL, TG * Autosomal Dominant * Causes pancreatitis
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S. Aureus
* Gram positive * Catalase positive * Cluster * Cocci
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Staphylococcus Epidermidis
* Novobiocin sensitive * Coagulase negative * Catalase Positive * Cocci * Gram +
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Staphylococcus saprophyticus
* Novobiocin resistant * coagulase negative * catalase positive * Cocci * Gram positive
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Streptococcus Pneumoniae
* Capsule * optochin sensitive * bile soluble * alpha hemolysis * Catalase negative * cocci, chains * Gram positive
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Viridans streptococci: S. mutans
* no capsule * optochin resistant * bile insoluble * alpha hemolytic * cocci, chains * Gram +
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Streptococcus pyogenes
* Bacitracin sensitive * Beta hemolytic * cocci, chains * catalase negative * Group A strep * Gram positive
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Stretococcus agalactiae
* Group B strep * Bacitracin resistant * Beta hemolysis * catase negative * cocci, chains * gram positive
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Enterococcus
* Group D * Growth in bile and 6.5% NaCl ( E. faecalis) * gamma hemolytic ( no hemolysis) * catase negative * cocci, chains * Gram positive
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Streptococcus Bovis
* non-enterococcus * grows in bile * does not grow in 6.5% NaCl * Gamma hemolytic ( no growth) * Catalase negative * chains, cocci * gram positive
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Actinomyces
* Anaerobe * not acid fast * branching filaments gram positive
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Nocardia
* aerobe * acid fast * branching filaments * gram positive
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alpha hemolytic
* Strep pneumoniae * Viridans streptococci ( S. mutans)
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Beta hemolytic
Forms clear areas of hemolysis on blood agar * Staphylococcus aureus * Streptococcus pyogenes * Streptococcus agalactiae * Listeria monocytogenes
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Neisseria Meningitidis
* Maltose fermenter * Diplococci * Gram negative
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Neisseria gonorrheae
* maltose non-fermenter * diplococci * gram negative
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Gram negative: Coccoid rods
* H. influenzae * pasteurella * Brucella * Brodetella pertussis
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Gram negative: Rods Fast Lactose fermenters
* Klebsiella * E. Coli * Enterobacter
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Gram negative Rod Slow Lactose fermenter
* Citrobacter * Serratia
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Gram negative Rods Lactose non-fermenter Oxidase negative
* Shigella * salmonella * proteus * yersinia
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Gram negative Rods Lactose non-fermenter Oxidase positive
Pseudomonas
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Campylobacter jejuni
* Grows in 42C * oxidase positive * comma shaped * gram negative
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Vibrio Cholerae
* Grows in alkaline media * oxidase positive * common shaped * gram negative
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Helicobacter pylori
* produces urease * oxidase positive * comma shaped * gram negative
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