Biochemistry Final Q&A 40-80 Flashcards
41-cholesterol: structure, biological role. Biosynthesis of cholesterol in the liver. Hypercholesterolemia: causese and
consequences?
- -Structure -cholesterol is an animal sterol. -it is a solid alcohol having group at C3.
- -Biological role : serves as a building block for synthesizing various steroid hormones, vitamin D, and bile acids. (functions of cholesterol): it is important for:
(1) it enter in the structure of everybody cell particularly: (a) cell membranes. (b) in nervous tissue. (2)synthesis of steroid
hormones. (3)synthesis of bile salts. (4)synthesis of vitamin D3
–Biosynthesis of cholesterol in the liver: The synthesis of cholesterol occurs in 5 stages: 1-synthesis of HMG Co-A. 2-formation of
mevalonate (6C). 3-production of isoperinoid units (5C). 4-synthesis of
squalene (30C). 5-conversion of squalene to cholesterol
–Hypercholesterolemia: causes: 1-Diabetes mellitus. 2-Nephrotic syndrome. 3-Hypothyrodism. 4-obstructive jaundice.
42-Biosynthesis of fatty acids, Localization, stages of synthesis, citrate shuttle, malonyl-Co-A formation. NADPH sources?
–Localization: -intracellular location: cytosol. -organic location: many tissues including liver, adipose tissue, lung and kidney.
–Stages of synthesis: There are 3 stages of synthesis of the fatty acid: -first stage: production of Acetyl-Co-A and NADPH. -second
stage: conversion of Acetyl-Co-A to malonyl-Co-A. -third stage: reactions of fatty acids synthase complex. Malonyl-Co-A
–formation: Acetyl-Co-A is carboxylated to Malonyl-Co-A by the enzyme Acetyl-Co-A carboxylase. This is an ATP dependent
reaction and requires biotin for Co2 fixation.
–Sources of NADPH: 1- one molecule of NADPH is generated for each molecule of Acetyl-Co-A that is transferred from
mitochondria to the cytosol. 2- NADPH molecules comes from pentose phosphate pathway.
43-Triacylglycerols lipolysis in adipocytes: reactions, enzymes, regulation. Ways to use free fatty acids ?
–Enzymes of lipolysis: is carried out by a number of lipase enzyme, which are present in adipose tissue. These are: 1-Hormone
sensitive triacylglycerol lipase. 2-Diacylglycerol lipase. 3-Monoacylglycerol lipase
–Regulation of lipolysis: The key enzyme
controlling lipolysis is Hormone sensitive triacylglycerol lipase. It exists in 2 forms: -Active form (phosphorylated). -Inactive form
(de-phosphorylated).
–Causes of excessive lipolysis: (low insulin and high glucagon): 1-starvation. 2-Diabetes mellitus. 3-low
carbohydrate diet. 4-in certain infectious disease as in tuberculosis (due to high catabolic state).
44- Brown adipose tissue: especially metabolism. The mechanism of thermos genesis.
- -Brown adipose tissue: (a) certain areas of adipose tissue appear brown as they contain high content of mitochondria, cytochromes and well developed blood supply
- -Function: production of heat. They contain a protein call Thermogenin. This protein acts as uncoupler of oxidative phosphorylation: decrease production of ATP and increase generating of heat.
- (c) site: common in animals exposed to cold atmosphere for warmness, and it is little in human.
45-Hereditary diseases of lipid metabolism. Familial hypercholesterolemia, Niemann-pick disease, Gaucher,and others?
–Niemann-pick disease: Enzyme deficiency: sphingomyelinase
–Clinical symptoms: Enlarged liver and spleen, mental retardation;
fetal in early life.
–Gaucher disease: Enzyme deficiency: beta-glucosidase.
–Clinical symptoms: Enlarged liver and spleen, erosion of
long bones, mental retardation in infants.
–Familial hypercholesterolemia: Enzyme deficiency: LDL (low density lipoprotein). clinical symptoms: yellowish area around your
eyes, and painful in Achilles tendon.
46-structure and function of biological membranes. The role of lipids and proteins in the maintaining the function of the
membranes. Transport of substances through cell membranes, modes of transport ?
— Structures :it composed of phospholipid
bilayer, which have 2 parts: hydrophilic part and hydrophobic part.
–Functions of the biological membranes: 1-to separate the
interior and exterior of the cell. 2-to maintain concentration of the gradients of the various ions
–The role of lipids and proteins in the maintaining the function of the membranes: to formation the permeability barrier of cells and subcellular organelles in the form of a lipid bilayer.
–Modes of transport: there are 3 mechanisms of transport: passive, facilitated, active transport
48- Digestion of proteins in the gastrointestinal tract, biosynthesis of hydrochloric acid and pepsinogen in the stomach,
proteases of the pancreas and intestines. Activation of zymogens in the gastrointestinal tract, the specifics of the action of
each of the proteases ?
—Digestion of proteins proteolytic enzymes of the GIT by attack peptide bonds of a number of amino acids, but they exhibit the
preference for particular types of peptide bonds: proteinases: -pepsin: aromatic (Phe, Try) and acidic amino acids(GLU, ASP). -
Trypsin: basic amino acids (Arg, Lys) -chymotrypsin: hydrophobic (phe,Tyr, Trp, Leu) and acidic AA (Glu, Asp).
–Elastase: an amino acid with a small side chain (Gly, Ala, Ser)
–Peptidases: Carboxypeptidase A: all amino acids (not Arg and Lys). Carboxypeptidase B: basic amino acids (Arg, Lys)
–Leucine aminopeptidase: all amino acids. Prolidase: proline. Dipeptidase: splits only dipeptides.
–Digestion in the gastrointestinal tract:1- in the mouth: chewing starts the mechanical breakdown of protein. 2- in the stomach:
the chemical digestion of protein begins from hydrochloric acid (HCL), and the enzyme pepsin. 3- in the small intestine:
polypeptides are broken doen into amino acids, dipeptides, and tripepetides by protein digesting enzymes secreted from the
pancreas. 4- A variety of different transport proteins move the products from protein digestion into the mucosal cell. 5-Dipeptides and tripeptides can enter the mucosal cell, they are broken down into single amino acids. 6- Amino acids pass from
the mucosal cell into the blood and travel to the liver. The liver regulates the distribution of amino acids to the rest of the body.
7- small amounts of dietary protein is lost in the feces.
–Biosynthesis of HCL: in the stomach HCL are secreted by parietal cells (or oxyntic cells) of gastric gland.
– Biosynthesis of proteases :of the pancreas and intestines Several proteases are synthesized in the pancreas and secreted into
the lumen of the small intestine.
50- common ways of amino acid conversion. Examples of reactions. Gives the name of enzymes and the role of these
transformations ?
– Common ways of amino acid conversion
1-Transamination: is the transfer of amino group from Alpha-amino acid to Alphaketoacid to form a new Alpha-amino acid and new Alpha-ketoacid.
-2-Deamination: is the removal of amino group from amino acid in the form of ammonia (NH3). Site: mostly in the liver and
kidney. Steps: oxidative, non-oxidative, hydrolytic deamination.
-3-Trans-deamination: it is a transamination of most amino acids with Alpha-ketoglutarate to form glutamate, then glutamate
de-aminated to give ammonia
-Functions: -some amines have important biological function: (a) Histamine (from histidine) is vasodilator. (b) gamma amino
butyric acid (from glutamate) is neurotransmitter. 1-Deamination: glutamate dehydrogenase. 2-Decarboxylation: decarboxylase.
51- Transamination of amino acids. Give examples of reactions. Name the reaction enzymes and the role of transamination of
amino acids ?
-Transamination of amino acids: it is the transfer of amino group from alpha-amino acid to alpha-keto acid to form
a new alpha-amino acid and new alpha-keto acid
-Name of the enzyme: transaminase. Role of transamination of amino acids: to generate the amino acid version of keto-acids and
keto-acids version of the original amino acid
52- Amino acid decarboxylation. Biologically active amines derived from amino acids. Structures and functions ?
–Biogenic amines: is the product of decarboxylation of amino acids ,they consist of :an aliphatic, aromatic, or heterocyclic
structure with attached of one or more amino groups.
–functions: some amine have biological functions. e.g. 1-Histamine: (from
Histidine) is vasodilator. 2-Gamma- amino butyric acid: (from glutamate) is neurotransmitter.
53- Metabolism of phenylalanine and tyrosine. Synthesis of hormones and neurotransmitters (catecholamines, thyroxine,
triiodothyronine). Phenyl ketonuria, albinism, alkaptonuria ?
–phenylalanine is a ketogenic and glycogenic essential amino acids.
-Function: phenylalanine is a precursors of tyrosine in the liver as the following:
-This reaction needs phenylalanine hydroxylase enzyme and tetrahydrobiopterin as coenzyme. This result in the formation of
Dihydrobiopterin
-Metabolism of tyrosine:Tyrosine is a ketogenic and glycogenic non-essential amino acids. –it becomes essential in case of
deficiency of phenylalanine hydroxylase
-Synthesis of catecholamines: They are synthesized from tyrosine at storage sites: adrenergic neurons and adrenal medulla.
-Biosynthesis of Thyroid hormones Thyroid hormones: Thyroxine ( tetraiodothyronine and triidothyronine- are synthesized from
tyrosine residues of the protein thyroglobulin and activated iodine.
–Phenylketonuria Definition: it is inherited deficiency of phenylalanine hydroxylase enzyme (hepatic enzyme).
Symptoms: (1)mental retardation. (2)increased blood phenylalanine. (3)Failure to walk and talk.
-Prevention of phenylketonuria: -Any infant proved to have abnormal high level of phenylalanine, should feed milk containing
very low amount of phenylalanine.
–Albinism definition: hereditary deficiency of tyrosine hydroxylase enzyme in melanocytes.
Effects: defective synthesis of melanin pigments. Eye, skin and hair are affected. Types of Albinism: according to the site
affected (a)eye: ocular albinism. (b)skin: cutaneous albinism. (c)eye and skin
54- Alanine metabolism. Synthesis of alpha-alanine from pyruvate and aspartate. Catabolism of alpha-alanine to the final
products. Role of Alanine in transport of ammonia from skeletal muscles ?
–Alanine is produced by the transamination of one
molecule of pyruvate by 2 different steps: (1) conversion of glutamate to alpha-ketoglutarate using a glutamate-alanine
transaminase. (2) conversion of valine to alpha-ketoisovalerate by transaminase C.
–synthesis of Alanine from Aspartate :Aspartate is non-essential amino acid and glycogenic. Aspartate is formed from
oxaloacetate by transamination. Aspartate transaminase is important for the interconversion of aspartate and glutamate
–Role of Alanine in transport of ammonia from skeletal muscles: Alanine undergoes a transamination reaction with free alphaketoglutarate, which is then deaminated to form pyruvate and free ammonium ion. Catabolism of alpha-alanine to the final
products
57-synthesis of ammonia in the body. Toxicity of ammonia to brain cells. Temporary and final neutralization of ammonia in
the body. Urea cycle ?
–The production of ammonia occurs from the amino acids ( transamination and deamination ), biogenic
amines, amino group of purines and pyrimidines and by the action of the intestinal bacteria (urease) on urea
–Toxicity of ammonia to brain cells Definition: it is the elevation in the blood ammonia concentration is harmful to the
brain.
Symptoms: (A)Flapping tremors, slurring speech, blurring vision. (B)High concentration of ammonia may cause coma and
death
–Types and causes of hyper ammonemia: Hyperammonemia: elevation in blood NH3 level. Types: may be genetic or
acquired. Impairment in urea synthesis due to a defect in any one of the 5 enzymes which are described in urea synthesis. All
these disorders leads to hyperammonemia and cause hepatic coma and mental retardation.
—Temporary and final neutralization of ammonia in the body:
(A) Ammoniotelic
(B) uricotelic
C ) ureotelic:
59- protein biosynthesis: activation, initiation, elongation, termination, post-translation ,modification.
–protein biosynthesis :is a core biological process, occurring inside cells, balancing the loss of cellular proteins (via degradation or
export) through the production of new proteins.
–The phosphorylation of a protein can make it active or inactive.
Phosphorylation can either activate a protein (orange) or inactivate it (green).
–The initiation of protein
synthesis: is the process that results in bringing together an 80S ribosome with a messenger RNA (mRNA) and initiator
methionyl-transfer RNA (Met-tRNAi)
–Elongation: is the phase of the protein-synthesis pathway that is responsible for the growth of nascent polypeptide chains.
–termination :once a stop codon has been encountered. The new polypeptide chain is released with the help of termination sequences
– post-translation :covalent processing events that change the properties of a protein by proteolytic cleavage and adding a modifying group, such as acetyl
–modification: Changes in tertiary structure of proteins brought about by specific chemical conjugation affect key cellular processes
60- Nucleoprotein exchange: purine breakdown. Violation of Nucleoprotein metabolism ?
–Metabolism of purine: The end product of purine metabolism in the human is uric acid. The sequence of reactions in the
metabolism of purine:
1- the nucleotide mono-phosphates are converted to their respective nucleosides forms (adenosine, inosine and guanosine ) by the action of nucleotidase.
2- The amino group, either from AMP or adenosine, can
be removed to produce IMP or inosine.
3- Inosine and guanosine are converted to hypoxanthine and guanine by purine nucleoside phosphorylase. Adenosine is not degraded by this enzyme, hence it has to be converted to inosine.
4- Guanine undergoes deamination by guanase to form xanthine. 5- Xanthine oxidase: is an important enzyme that converts hypo-xanthine
to xanthine, and xanthine to uric acid.
–Violation of Nucleoprotein metabolism (disorders):
1- Hyperuricemia and gout: refers to elevation in the serum of the uric acid
2- Gout: is the metabolic disease associated with overproduction of uric acid.