Biochemistry Final: Exam #3 Review Flashcards
What are the three sources of glutamate?
1) Diet (major)
2) Transamination of a-KG
3) Deamination of Glutamine
Transamination
Amino acid + a-KG–> Glutamate + a-ketoacid
- Amine group from amino acid is carried by B6(pyridoxal 5’-phosphate) to a-KG & swapped for carboxyl group
- Makes Glutamate & corresponding a-Ketoacid
Deamination of Glutamine
Glutamine–> Glutamate, via the enzyme “Glutaminase”
Why do we make glutamine?
Glutamine production in peripheral tissues in an important mechanism of ammonium ion removal
How do we make glutamine?
Glutamate–> Glutamine, via the enzyme “Glutamine Synthetase”
- Ammonium ion required (removes toxic substance too!)
- ATP hydrolyzed to ADP + Pi
Where does this glutamine go?
Enters the bloodstream and is absorbed by the:
- Kidneys
- Liver
- Gut
Here, the amide group is hydrolyzed by Glutaminase (Glutamine–> Glutamate), generating Glutamate & NH4+
What do the kidenys and liver do with ammonium ion (NH4) generated by the glutaminase reaction i.e. deamination of glutamate?
- Kidneys excrete NH4 directly
- Liver channels NH4 into the urea cycle
(Gut, NH4 serves as an important nutrient)
PLP
- Active form of pyridoxal phosphate
- Vitamin B6
- Cofactor that is required for aminotransferase reactions
ALT
Alanine + a-KG –> Pyruvate + Glutamate
Pyruvate + Glutamate–> a-KG + Alanine
- Alanine Aminotransferase (ALT)
- Requires Vitamin B6 (PLP)
- Connects muscle & liver metabolism
- Found primarily in the liver
Glucose-Alanine Cycle
- Muscle glycolysis produces pyruvate
- ALT converts pyruvate into alanine that is released into the blood
- Blood carries alanine to the liver
- In liver, ALT converts alanine back into pyruvate
- Pyruvate is used for gluconeogenesis
AST
1) Oxaloacetate + Glutamate –> a-KG + Aspartate
2) Aspartate + ATP + Glutamine–> Asparagine, via the enzyme “Asparagine Synthetase”
Clinical Significance of ALT vs. AST
Serum elevation of ALT is more specific for liver damage
Folate & THF
- Tetrahydrofolate (THF) Serves as an acceptor of 1-carbon groups (methylene)
- Derived from the vitamin, Folate
Most oxidized form of THF
N10-formyl THF
Most reduced from of THF
- N5-methyl THF
- Is NOT readily oxidized back to N10-formyl THF
- Thus, accumulates in the body
Which amino acid is the main donor of 1 carbon groups?
Serine
Serine Hydroxymethyl transferase
Serine + THF–> Glycine + N5, N10-methylene THF + H20
Phenylalanine Hydroxylase
Phenylalanine–> Tyrosine
- Requires oxygen, NADH, & the reduced cofactor tetrahydrobiopterin (THBtn) to oxidize the aromatic ring of phenylalanine
Dihydrobiopterin Reductase
Dihydrobiopterin (DHBtn, oxidized) –>Tetrahydrobiopterin (THBtn, reduced)
Phenylketonuira (PKU)
- Most common inborn error of metabolism
- Accumulation of phenylalanine that causes: severe intellectual disability, recurrent seizures, hypopigmentation, & eczematous skin rashes
- Caused by defect in phenylalanine hydroxylase OR DHBtn Reductase
- Must avoid nutrisweet/ aspartame
The overall rate of amino acid degradation is influenced by the activity of which enzyme? What inhibits this enzyme & what activates this enzyme?
Mitochondrial Glutamate Dehydrogenase
- Inhibited, high energy: GTP, ATP, NADH
- Activated, low energy: GDP, ADP, NAD+
Mitochondrial Glutamate Dehydrogenase
Glutamate + NAD+ + H20 –> a-KG + NADH + NH4+
Which amino acids can be converted into pyruvate? And what is pyruvate eventually used to make?
- Glycine
- Serine
- Cysteine
- Alanine
- OAA
Glycine, through several steps, can eventually be converted into pyruvate. How is glycine also related to the formation of kidney stones?
Glycine–> Serine –> Pyruvate = one possible path
Glycine–> Glyoxalate–> Oxalate= second possible path
- Oxalate is a metabolic end product that is excreted in the urine
- Oxalate also has a high affinity for Ca++, and can precipitate as kidney stones
Besides via pyruvate, two other amino acids can be shunted to make OAA. Which?
- Asparagine
- Aspartate
Asparagine–> Asparate, via enzyme “asparaginase”
Aspartate–> OAA, via AST
Which amino acid can be used to make a-KG?
Glutamine
Glutamine–> Glutamate, via enzyme “Glutaminase”
Glutamate–> a-KG, via Aminotransferases & Glutamate Dehydrogenase
Therefore, amino acids that can make glutamate, can also be used to make a-KG
Which amino acids can make glutamate?
- Proline
- Histidine
- Arginine
Glycine Encephalopathy
- Nonketotic hyperglycemia that presents soon after birth with symptoms of: lethargy, lack of muscle tone, & muscle twitching
- Caused by defects in glycine cleavage system
What amino acids can make propoionyl-CoA?
- Threonine
- Methionine
- Valine
- Isoleucine
What is propionyl-CoA eventually made into, and enzymes & cofactors are needed for that transformation?
Succinyl-CoA
1) Carboxylase= Propionyl-CoA–> D-methylmalonyl-CoA, requires Biotin
2) Racemase= D-methylmalonyl-CoA–> L-methylmalonyl-CoA
3) Mutase= L-methylmalonyl-CoA–> Succinyl-CoA, requires Vitamin B12
What is the clinical significance of defects in Carboxylase/ Biotin, Racemase, or Mutase/ B12?
- Carboxylase/ Biotin= Propionic Acidemia
- Racemase= D-methylmalonyl-CoA Aciduria
- Mutase/ B12= Methylmalonic Aciduria
What is the only direct source of B12?
Bacteria
What protein is needed to absorb B12?
- Intrinsic Factor
- Produced by parietal cells of the stomach
Once in the body, what protein transports B12?
Transcolbalamin
Where do you store B12?
Liver
Pernicious Anemia
- Anemia caused by a lack of intrinsic factor (protein that is needed to absorb B12 from the diet)
- Autoimmune disorder w/ antibodies against parietal cells of the stomach that produce intrinsic factor
Megaloblastic Anemia
- Megaloblastic cells reach a large size because they are unable to complete cell division due to deficient DNA replication
- N5- methyl-THF is the most reduced form of THF
- More oxidized forms of THF are required in the enzymatic reactions that generate purines (A, G) & thymidine for DNA synthesis
- Vitamin B12 is required for the only reaction that converts N5-methyl-THF back to THF
What is the only reaction in mammals that converts N5 methyl-THF back to THF?
Homocytsine–> Methionine, catalyzed by the enzyme “methionine synthase”
How does B12 deficiency lead to mental confusion & loss of sensation?
- Demyelination
- Though that methionine/ methionine synthase reaction (homocytsine–>methionine & requires B12 cofactor) is somehow involved
B12 Deficiency & Atherosclerosis
- Homocysteine builds up in B12 deficiency (methionine synthase reaction impaired)
- Thought that homocysteine damages arteries, oxidizes LDL, & interferes with blood clotting
BCAA Catabolism steps
1) BCAA–> Branched chain a-ketoacid, via “branched chain aminotransferase”
2) Branched chain a-ketoacid–> branched chain acyl-CoA via decarboxylation by BCKDH
3) Remainder proceeds like B-oxidation
BCKDH
Branched chain a-ketoacid dehydrogenase complex
Maple Syrup Urine Disease
- Accumulation of branched chain a-ketoacids in the urine, which gives the urine a characteristic maple syrup odor
- When untreated, can cause: poor feeding, vomiting, slow or irregular breathing, ketoacidosis, hypoglycemia, & neurological dysfunction
- Caused by a defect in BCKDH
- Treatment is a diet low in BCAAs
Tyrosinemia- II
- Rare disorder characterized by keratitism, photophobia, & painful skin lesions on the palms or the hands/ soles of the feet, as well as intellectual disability
- Caused by a tyrosine aminotransferase defect
Alkaptonuria
- Black urine
- Caused by a defect in homogentisate oxidase
- build-up of homogentisate turns black when oxidized by exposure to air
Tyrosinemia- I
- Potentially fatal disease that causes liver failure, kidney dysfunction, & neurological impairment
- Diagnosis is based on succinylacetone in the urine
- Maleylacetoacetate & fumarylacetoacetate accumulate and are eventually converted to succinylacetone
- Succinylacetone inhibits heme synthesis
What is the rate-limiting step of urea synthesis? What is the required allosteric activator of this enzyme?
- Mitochondrial carbamoyl phosphate synthatase I
- N-acetylglutamate
N- acetylglutamate is produced by what enzyme? What activates this enzyme?
N-acetylglutamate Synthetase produces N-acetylglutamate (required cofactor of Mitochondrial carbamoly phosphate synthatase I), which is activated by arginine
What are high levels of arginine indicative of?
High levels of peripheral ammonium
Urea Cycle Mnemonic
- Ordinarily= Ornithine
- Careless= Carbamoyl Phosphate
- Crappers= Citrulline
- Are= Aspartate
- Also= Arginosuccinate
- Frivolous= Fumarate
- About= Arginine
- Urination= Urea
Ornithine Transcarbamylase
- Ornithine + Carbamoyl Phosphate–> Citrulline
- Mitochondria–>Cytoplasm
Arginosuccinate Synthetase
- Citrulline + Aspartate–> Arginosuccinate
- Cytoplasm
Argininosuccinase
- Arginosuccinate–> Fumarate + Arginine
- Cytoplasm
Arginase
- Arginine–> Urea + Ornithine
- Cytoplasm
urea-TCA bicycle
- Fumarate links the urea cycle to the TCA cycle
- Oxaloacetate in the TCA cycle, which is converted to Aspartate completes the bicycle
Where do the two amino groups in urea come from?
1) carbamoyl phosphate
2) aspartate
What is the only organ that can perform the entire urea cycle?
Liver
Hyperammonemia
Caused by defects in the urea cycle
- Early cycle defects are the worst (Carbamoyl Phosphate Synthetase I & Ornithine Transcarbamoylase)
In addition to urea cycle defects, what else can cause hyperammonemia?
- Urea cycle is carried about by the liver
- Liver disease (alcoholic cirrhosis) causes hyperammonemia
- Ammonia is a potent neurotoxin & can cause lethargy (AMS) & convulsions
- Why? causes swelling of astrocytes/ brain
Creatine Kinase
Phosphorylates creatine to creatine phosphate
What is creatine phosphate used for?
- Energy reserve
- Creating phosphate is able to donate high phosphate to ADP, making ATP
A percentage of creatine phosphate spontaneously converts to what? Why is this important?
- Creatinine
- Indication of kidney function