Biochemistry final Flashcards
Where is the high energy bonds in Phosphocreatine used?
Nerve cells and muscle cells for storage
Creatine reaction
Phosphocreatine + ADP = ATP + Creatine
Enzyme of 1st step in Creatine synthesis (in kidney)
Arginine- Glycine- Transamidinase
Enzyme of 2nd step in Creatine synthesis (in liver)
Guanidinoacetate-methyltransferase
Thioester bond forms between…
A carbocylic acid and a thiol (SH) group
Enzyme of Folic acid/ Vit.B9 synthesis
Dihydrofolate reductase
Dihydrofolate (FH2) reductase synthesis can be inhibited by antivitamins. Which ones?
Aminopterine, Ametopterine and Trinutoprim
Biochemical role of Vit.B9/ Folic acid
To transfer carbon fragments. Carbon group is carried on N5, N10 or a bridge between them.
Deficiency of Folic acid/ Vit.B9
Slow cell division, Slow growth, this will cause low RBC amount. Macrocytic hyperchrom anaemia
Which receptor binds to Insulin?
Receptor tyrosine kinase
Which enzyme is activated by Glucagon in the signal pathway?
Adenylate cyclase
Where is Glycogen stored?
Liver and muscle
Biochemical role of Vit. E/ Tocoferol
Stop free radical attack in biological membranes by antioxidant activity.
ROS (reactive oxygen species) free radicals:
Superoxide anion radical, Hydroxyl radical, Peroxyl radical
ROS (reactive oxygen species) non-free radicals:
Hydrogen peroxide produced på oxidase
RNS (reactive nitrogen species) free radicals:
Nitrogen oxide, Oxidized NO=smoke, fog
RCS (reactive chloride species) non free radicals:
Hipochloric acid (HOCl), produced by neutrophyls by myeloperoxidase enzyme during
Location of Glycolysis
Cytoplasm of each cell, muscle and RBC
Which steps in Glycolysis produces energy?
Glyceraldehyde-3-P –> 1,3biP-glycerate in form of NADH-H+,
1,3-biP-glycerate –> 3-phosphoglycerate in form of ATP,
and Phosphoenolpyruvate –> Pyruvate in form of 2 ATP
Deficiency of vitamins in general:
Decrease enzymatic processes, disturb metabolic processes and pathological state may develop
Name some fat soluble vitamins:
Retinol (Vit.A), Calciferol (Vit.D), Tocoferol (Vit.E) and Phylloquinone (Vit.K)
Name some water soluble vitamins:
Vit. B&C (Thiamine/B1, Biotin, Riboflavin/B2, Pyroxidine/B6)
Role of fat soluble vitamins
Role in bile, role as transporters, in storage
Role of water soluble vitamins
Role as cofactors/prostetic groups
Where is gluconeogenesis located?
Cytoplasm in liver (kidney and intestines), but pyruvate–> OAC happens in mitochondria
Where is gluconeogenesis important?
Brain, testes, erythrocytes and kidney
Energy balance for Gluconeogenesis
If the product is glucose: -6 ATP is used
If the product is Glycogen: -7 ATP is used
Enzyme needed for OAC–> Phosphoenolpyruvate
Phosphoenolpyruvate carboxykinase
Enzyme needed for Pyruvate–> OAC
Pyruvate carboxylase (regulator enzyme)
Which lipotropic factors do we have?
Choline and Inositol
Synthesis of Choline happens in…?
Liver in the hepatocytes:
Serine –> ethanolamine –> choline
Sources of Choline
egg yolk, soya, peanuts, wheat germ
Deficiency of Choline
Fatty liver, haemorrhagic kidney degeneration, less AcCoA, slow growth
Source of Inositol
yeast, grains (diet contains inositol mainly in Phytate form
synthesis of Inositol happens in…?
Liver (and kidney)
Deficiency of Inositol
mostly in experimental conditions: fatty liver, slow growth
Main role of AcCoA
to deliver the acetyl-group to the TCA cycle to be oxidized for energy
What is needed in the complex of oxidation of Pyruvate to AcCoA
The enzyme is pyruvate dehydrogenase. We also need: Thiamine pyrophosphate (TPP) to remove CO2, Lopoic acid to add HS-CoA, NAD+ and FAD which removes H+ by oxidation.
Location of Glycerol phosphate shuttle
skeletal muscle and brain
Concept of Glycerol phosphate shuttle:
NADH+H+ needs to be transported into the mitochondria, which is the only place ATP can be produced. NADH+H+ cannot cross the mitochondrial membrane, so it needs to be taken up by dihydroxyacetone phosphate
Source of Vit.K/Phylloquinone
Green plants, kale, avocado
Role of Vit.K/Phylloquinone
Gamma carboxylation of glutamate activates blood clotting factors. Vit.K also activates osteoralsin which is a bone protein, so this helps in bone formation
How does blood clotting occur?
Prethrombin gets converted to Prothrombin which activates the blood clotting factors. Gamma-carboxyglutamate plays a role in the conversion of prethrombin to prothrombin.
Deficiency in Vit.K/ Phylloquinone
Often in young chicken,
Decreased bone formation, bleeding syndrome in newborns. The reason for this bleeding syndrome is the low synthesis of Vit.K from mother to featus is not good enough.
So low prothrombin level in blood is the cause.
An anitvitamin for Vit.K/Phylloquinone
Warfarin, which blocks epoxyreductase in the formation of Vit.K (rat poison)
The TCA is located in….?
Mitochondrial matrix, in all cells except RBC
Energy balance of TCA cycle:
12 ATP per cycle= 24 ATP
Regulators of TCA cycle:
Citrate synthase (in=NADH+H+, ATP) (stim=ADP, AcCoA), Isocitrate DH (in=NADH+H+, ATP) (stim=NAD+, ADP), Succinate DH (in=oxaloacetate) (stim= succinate)
Enzyme used during Pyruvate –> AcCoA:
Pyruvate DH
Enzyme used during AcCoA –> Citrate
Citrate synthase (regulating enzyme)
Enzyme needed for Citrate –> Isocitrate
Aconitase
Enzyme needed for Isocitrate –> alpha-ketoglutarate
icocitrate DH (regulating enzyme)
Enzyme needed for alpha-ketoglutarate –> Succinyl-CoA
alpha-ketoglutarate DH
Enzyme needed for Succinyl-CoA –> Succinate
Succinyl-CoA synthetase
Enzyme needed for Succinate –> Fumarate
Succinate DH (regulating enzyme)
Enzyme needed for Fumarate –> Malate
Fumarase
Enzyme needed for Malate –> OAC
Malate DH
Enzyme needed for OAC –> AcCoA
Oxaloacetate DH
Name the two main types of Vit.D/Calciferol
Ergocalciferol/Viit. D2 and Cholecalciferol/Vit.D3
Dietary vitamin of calciferol is..?
Ergocalciferol is present in sun-cured hay
active form of Vit.D/Calciferol
Hydroxylation of vit.D3 make 25-hydroxy-cholecalciferol. The enzyme is 25-hydroxylase.
25-hydroxy-cholecalciferol is further hydroxylated to 1,25-dihydroxycholecalciferol by the enzyme 1-alpha-hydroxylase
Regulators in GNG
Hormonal regulaton: Insulin (inhibits) and Glucagon (stimulates).
Allosteric regulation: Citrate, AcCoA (stimulates), ADP, Fructose-2.6-BP (inhibits)
Where is the two enzymes in synthesis of 25-hydroxycholecalciferol and 1.25-hydroxycholecalciferol located?
25-hydroxylase enzyme in liver microsomes, and alpha-1-hydroxylase enzyme in kidney mitochondria
What is the chemiosmotic theory?
The theory of proton pumping which results in ATP
Inhibitor of Complex I in respiratory chain:
Rotenone, which blocks electron flow from Fe-S to UQ
Inhibitor of Complex II in respiratory chain:
Malonate
Inhibitor of Complex III in respiratory chain:
Antimycin-a, which blocks electron flow from Cytochrome bL to UQ
Inhibitor of Complex IV in respiratory chain:
Cyanide and carbon monoxide, which blocks acess of O2 to Cytochrome A3
Inhibitor of Complex V in respiratory chain
Oligomycin, which damages FO subunit
Role of VIt.D/Cholecalciferol in young animals:
In young animals it is increasing the mineralization of newly formed bones.
Role of Vit.D/Cholecalciferol in older animals:
In older animals Vit.D will demineralizate the pre-existing bones because of parathormone (PTH) like activity of Vit.D.
Role of Vit.D/Cholecalciferol in any ages:
At any ages, Vit.D will have a Ca2+ and Pin absorption that increases in the intestinal epithelial cells
Deficiency of Vit.D/Cholecalciferol in young animals:
Decreased mineralization of newly formed bones -> rickets (bowed legs)
Deficiency of Vit.D/Cholecalciferol in older animals:
Demineralization of pre-existing bones because of parathormone secretion (concequence of low Ca2+ in blood) -> Osteomalacia (softening of bones)
Deficiency of Vit.D/Cholecalciferol at all ages:
Blood test -> Ca2+ and Pin is deacreased, and also alkaline phosphate activity is increased because of stimulated osteoblast function in order to repair damaged bones.
Alkaline phosphate test is to measure the amount of ALP in the blood. It is used to diagnose liver damage and bone diseases.
Symptoms of Hypervitaminosis of Vit.D:
Ca2+ and Pin increases in the blood, that leads to atherosclerosis, calcification of organs, tissues and membranes: gastrointestinal problems. Also, Ca2+ and Pin reabsorption increases in the kidney tubular epithelial cells that leads to Ca2+ and Pin precipitation in the lumen: Kidney failure!
Also: slow growth,
Role of PPP
Primarily an anabolic pathway that utilizes the 6-carbon sugars (glucose) to create 5-carbon sugars and reducing equivalents (NADPH). PPP will completely oxidize glucose to CO2 and H2O
What is the NADH+H+ created from PPP used in?
In synthesis of FA and steroid/cholesterol synthesis.
Primary function of PPP
Provide cell with ribose-5-P for synthesis of nucleotides and nucleic acids, AND metabolize dietary pentose sugars derived from digestion of nucleic acids, and rearrange carbon skeletons of dietary carbohydrates into glycolytiv/gluconeogenic intermediates.
Location of PPP
cytosol in liver, adipose tissue, adrenal cortex, testis and lactating mammary glands. These locations have high levels of PPP enzymes.
Regulation of PPP
- NADPH + H+ increases, Pentose increases = Whole PPP doesn’t work. It gets inhibited.
- NADPH + H+ increases, Pentose decreases = No oxidative PPP.
- NADPH + H+ decreases, Pentose increases = whole PPP will work (normal direction).
- NADPH + H+ decreases, Pentose decreases = oxidative part will work, non-oxidative part doesn’t work.
What does the oxidative part of the PPP?
Producing NADPH and is irreversible
What does the non-oxidative part of PPP?
Produces RIbose-5-phosphate and it inconvert sugars. It is reversible.
The conversion of B-carotene til Vit.A in cattle happens in…?
liver and mammary gland
The conversion of B-carotene to Vit.A happens in…?
the wall of the small intestine in most mammalian spp.
Which enzyme takes place in the breakdown of B-carotene?
B-carotene 15,15’-dioxygenase (carotenase)
How many Retinol is formed from 1 B-carotene?
2 Retinol/Vit.A molecules
Retinol is converted to Retinal by the enzyme….?
Retinol DH
Name som derivates of Retinol/Vit.A:
Retinal, 3-dehydroretinol, Retinoic acid and Retinyl-ester
Where is Retinol stored?
in the liver as Retinyl-esters
How is the blood glucose level regulated?
by glycogenolysis, glycogenesis, glycolysis and GNG
Blood glucose level in non-ruminants:
4-5 mmol/L
Blood glucose level in ruminants:
2-3 mmol/L
Blood glucose level in birds:
8-9 mmol/L
What so special with the blood glucose level in birds?
Newborn ungulates in the 1-3 first days - the fructose gives the blood sugar.
What happens in the pancreas when the body has too low blood glucose level?
The pancreas releases glucagon from the alpha-cells.
What happens in the pancreas when the body has too high blood glucose level?
The pancreas releases insulin from the beta-cells.
What does the liver do when the blood glucose level is too low?
The liver release glucose INTO the blood.
What does the fat cells do when the blood glucose level are too high?
The fat cells take in glucose FROM the blood
GLUT-1 transporter gives glucose to…?
erythrocytes and brain
GLUT-2 transporter gives glucose to…?
liver, kidney and intestines
GLUT-3 transporter gives glucose to…?
brain
GLUT-4 transporter gives glucose to…?
muscle and adipose tissue
What is so special about the GLUT-4 transporter?
GLUT-4 is insulin sensitive. This means that insulin is binding to this transporter and an insulin receptor makes a signal transduction cascade which allows GLUT-5 to transport glucose into the cell.
What effect does adrenalin have on blood glucose conentration?
It will cause hyperglycemia
Where is adrenalin produced?
Adrenal medulla
Which affected pathways and how will adrenalin affect?
Muscle glycogenolysis (positive) Muscle glycogenesis (negative)
What effect does glucagon have on the blood glucose concentration?
It will cause hyperglycemia
Where is glucagon produced?
In pancreas alpha-cells
Which affected pathways and how will glucagon affect?
Liver glycogenolysis, GNG (positive)
Liver glycogenesis, glycolysis (negative)
What effect does glucocorticoids have on the blood glucose concentration?
It will cause hyperglycemia
Where is glucocorticoids produced?
In adrenal cortex
Which affected pathways and how will glucocorticoids affect?
GNG (positive)
Glycolysis (negative)
What effect does ACTH have on the blood glucose concentration?
It will cause hyperglycemia
Where is ACTH produced?
in adenohypophysis
Which affected pathways and how will ACTH affect?
Glucocorticoids (positive)
What effect does STH (growth hormone) have on the blood glucose concentration?
It will cause hyperglycemia
Where is STH (growth hormone) produced?
in adenohypophysis
Which affected pathways and how will STH (growth hormone) affect?
Lipolysis (positive)
GNG from amino acids (negative)
What effect does insulin have on the blood glucose concentration?
It will cause hypoglycemia
Where is insulin produced?
in pancreas beta-cells
Which affected pathways and how will insulin affect?
Glucose uptake, glycogenesis, glycolysis (positive)
Glycogenolysis, GNG, fat and liver degradation (negative)
Name some of Pyridoxine/Vit.B9
Pyridoxamine, Pyridoxal, Pyridoxal phosphate, Pyridoxamine phosphate.
Role of Vit.B9/Pyridoxine
Maintaining brain function, make RBC, breakdown of proteins and antibody synthesis
Source of Vit.B9/Pyridoxine:
beans, nuts. egg, meat, fish, grains, cereals, green vegetables.
Which is the common available synthetic form of the vit.B9?
Pyridoxine hydrochloride, which is easily crystallizable and odorless. This is the form of pyridoxine typically used in nutrient supplements and animal diets.
With help of which enzyme does pyridoxine gets converted to pyridoxal?
NADP+-dependent pyridoxine DH
What happens with Pyridoxine/Vit.B9 in presence of ATP?
pyridoxal kinase phosphorylates pyridoxal into the active coenzyme “pyridoxal phosphate” (PALP)
Which is the final elimination product of Vit.B9?
the biologically inactive pyridoxic acid, which is excreted in the urine.
Can Vit.B9/Pyridoxine get stored in the body?
Yes, in small amounts only. Because the microflora in rumen and colon is able to synthesize the vitamin B9.
Location of fructolysis
Cytoplasm in liver
Enzyme of convertion from Fructose-1-P to both Dihydroxyacetone-P AND Glyceraldehyde in Fructolysis
Fructose-1-P aldolase
Location of fructogenesis?
Placenta in ungulates, other spp: cytoplasm in seminal vesicle.
Steps of fructogenesis:
Glucose to Sorbitol to Fructose. The enzymes are = aldolase reductase, and sorbitol DH
Location of Galactolysis:
In liver
Location of Galactogenesis
Mammary gland (lactose synthesis), bone and cartilage
Components of milk
Dry matter is 13 % of the whole. It consists of milk protein, milk fat and milk sugar. Then we have the water phase which is 87 % of the whole.
Milk protein consists of…?
Casein, lactalbumins (alpha and beta), beta-lactoglobulin
Where does the milk fat come from?
synthesized from mammary gland or derived from blood
Components of milk fat:
Triacylglyerols (plasma), FFA (plasma), cholesterol, phospholipids, fat soluble vitamins, essential fatty acids.
What is milk sugar?
Lactose (disaccharide) = Beta-D-glucose + Beta-D-Galactose, in Beta-1,4 bond
Where is milk sugar made?
Only made in mammary gland and made through lactose synthesis.
What is lactose intolerance?
Not enough lactase due to genetics or virus. Will cause diarrhea.
How to effect the percent of milk fat?
Diet=less roughage (less fiber), more forage.
Leads to the chewing= less saliva (pH=8,5.
Leads to rumen in pH gets low.
Leads to that proprionate-producing microbes grow intensively, but acetic acid-producing microbes grow slowely.
Leads to AcCoA decreases.
Leads to FA synthesis decreases.
Where is Vit.E/Tocoferol stored?
In the liver and adipose tissue
Source of Vit.E/Tocoferol:
Plant oils, wheat, corn, avocado, fish and alfalfa
What can destroy the activity of the vitamin E/Tocoferol?
UV light and oxidation
How is Vit.E excreted?
it is oxidized, then bound to glucoronic acid
Deficiency of vit.E/Tocoferol?
Products of auto-oxidation (lipd peroxides) are detected in the adipose tissue. These toxic products cause ultra-structural &biochemical changes in a number of cellular membranes.
Where is the predominant route of absorption of Vit.E?
Lymph
Main excretory route of Vit.E metabolites?
The bile
Biochemical role of Vit.B2/Riboflavin:
H-uptake and transport, Aerob dehydrogenase (H2O2 production), Anaerob dehydrogenase (respiratory chain), AND Redix enzymes
Deficiency of Vit.B2/Riboflavin:
Rat: dermatitis, growth failure, keratitis of cornea.
Poultry: leg paralysis (curled toe paralysis), feather loss.
Horse: Periodic opthalmia (“moon blindness”) and secondary infection of cornea.
Mammals: Fatty liver (beacuse of accumulating fatty acids as triacylglycerols), dermatitis, hair loss.
All species: Glossitis, angular stomatitis, pale lips, ulcerated corners of mouth
Where does oxidative deamination take place?
In all tissues, especially the liver, under aerob condtitions.
How does an amino acid become a keto acid?
Amine functional group is removed as ammonia (ammonia enters Urea cycle) and is replaced by a ketone group.
Which amino acid does the oxidative deamination often occur to?
Glutamate, because it’s the endproduct of many transamination reactions.
How is the oxidative deamination regulated?
By allosteric regulation og de enzyme glutamate dehydrogenase by ATP (inhibiton) and ADp (stimulating)
Which compound is made from oxidative deamination of Glutamate?
alpha-ketoglutarate
Name some ketogenic amino acids
Leucine
Name some glucogenic amino acids
Alanine and glycine