Biochemistry Flashcards
Define drug
A chemical which changes biochemistry
Why do most drugs not make covalent bonds with their biomolecular targets?
This would require high reactivity which makes it hard to be selective. If covalent chemistry is used in the body it would need to be heated to 80-90 degrees under reflux which is not possible
How do electrostatic interactions come about?
The attraction between molecules bearing opposite electronic charges
How do ion-ion interactions happen?
The closer they get the more attraction they feel until a certain point when you get repulsion
Why are ion-ion interactions stronger in a hydrophobic environment than a polar environment?
Due to competition by water. Usually, binding site is more hydrophobic than the surface, so this increases the effect of an ionic interaction
What are hydrogen bonds?
Electrostatic interactions between a polarised proton with a nearby atom bearing a lone pair
Define amino acid
Bifunctional organic compounds that possess both a carbonyl and amino group
What is an alpha amino acid?
Where the carbonyl and amino group are attached to the same central carbon atom (alpha-carbon atom)
Why can amino acids act as nucleophiles?
Due to their lone pairs
Define a Bronsted-Lowry acid
A proton donor
Define a Bronsted-Lowry base
A proton acceptor
How is basicity most commonly measured?
Using the pKa of a conjugate acid
Finish the sentence: the less acidic the conjugate acid…
the more stable it is, the lower the Ka, the higher the pKa, and therefore the more basic the original base
What does pKa tell you?
The pH at which the molecule is 50% protonated
What is the difference between an L-amino acid and a D-amino acid?
L-amino acids rotate plane polarised light to the left, and D-amino acids rotate plane polarised light to the right
Define amphoteric
Can react as either an acid or a base
Define isoelectric point (pl)
the pH at which the amino acid exists largely in an overall neutral, Zwitterionic form
How to calculate the pl for neutral amino acids?
The average of the two pKa values
How to calculate the pl for acidic amino acids?
The average of the two lower pKa values
How to calculate the pl for basic amino acids?
The average of the two higher pKa values
Define peptide
Chain of amino acids
What does ‘write N-terminus to C-terminus’ mean?
The amine group is on the left of the chain and the carboxyl group is on the right of the chain
How do amides form?
Condensation reaction between amines and carboxylic acids
How do we control where a reaction between amino acids occur?
Using protecting groups or the automated process which involves beads