Biochemistry Flashcards
DNA exists in the ——— form to fit into the ———
- Condensed, chromatin
- Nucleus
DNA loops —(number)— around a ——— to form a ——— (nicknamed ———)
- twice
- histone octamer
- nucleosome
- (“beads on a string”).
——— binds to the nucleosome and to ———, thereby stabilizing the chromatin fiber
- H1
- “linker DNA”
DNA has ——— charge from ———
- negative
- phosphate groups
Histones are ——— and have ———charge from ———
- large
- positive
- lysine and arginine (Note: LARge)
In mitosis, DNA ——— to form ———
- condenses
- chromosomes
DNA and histone synthesis occurs during:
S phase
Mitochondria have their own DNA, which is ——— and ———
- circular
- does not utilize histones
Heterochromatin is ———, and appears ——— on EM
- condensed
- darker
(HeteroChromatin = Highly Condensed)
Heterochromatin is sterically ———, and thus transcriptionally———, ——— methylation and ———acetylation
- inaccessible
- inactive
- increased
- decreased
Barr bodies are ———, categorized as —(heterochromatin or euchromatin)—, and may be visible on the ———
- inactive X chromosomes
- heterochromatin
- periphery of nucleus
Euchromatin is ———, and appears ——— on EM
- less condensed
- lighter
Euchromatin is transcriptionally ———, and sterically ———
- active
- accessible
(Euchromatin is Expressed)
DNA methylation changes the ——— without changing the ———
- expression of a DNA segment
- sequence
Name 5 processes DNA methylation is involved with :
aging, carcinogenesis, genomic imprinting, transposable element repression, and X chromosome inactivation (lyonization)
Methylation within gene promoter (——— ) typically ———
- CpG islands
- represses (silences) gene transcription
Dysregulated DNA methylation is implicated in ——— syndrome
Fragile X
Histone methylation usually causes ———, but can also cause ——— depending on ———
- reversible transcriptional suppression
- activation
- location of methyl groups
——— and ——— residues of histones can be methylate
Lysine and arginine
Histone acetylation results in ———, which yields ——— and thus ———
- removal of histone’s positive charge
- relaxed DNA coiling
- increased transcription
(Histone Acetylation makes DNA Active)
——— hormone synthesis is altered by acetylation of ——— receptor
- thyroid
- thyroid hormone
Histone deacetylation (removal of acetyl groups) results in ———, and thus ———
- tightened DNA coiling
- decreased transcription
Histone deacetylation may be responsible for altered gene expression in ——— disease
Huntington
What is uniparental disomy?
Offspring receives 2 copies of a chromosome from 1 parent and no copies from the other parent
What are the two types of uniparental disomy, and what do they each indicate about when a genetic error occurred?
1. HeterodIsomy (heterozygous) indicates a meiosis I error
2. IsodIsomy (homozygous) indicates a meiosis II error or postzygotic chromosomal duplication of one of a pair of chromosomes, and loss of the other of the original pair
What might be suggested by an individual manifesting a recessive disorder when only one parent is a carrier?
Consider isodisomy
Would someone with uniparental disomy be euploid (correct number of chromosomes)?
Yes
Most occurrences of uniparental disomy result in what type of phenotype?
Normal
Describe genomic imprinting, and disorders of imprinting:
- Genomic imprinting = One gene copy is silenced by methylation, and only the other copy is expressed (parent-of-origin effects)
- Disorders of imprinting: If expressed copy mutated, not expressed, or deleted altogether
What causes Prader-Willis syndrome?
Maternally derived genes are silenced; Disease occurs when the paternal allele is deleted or mutated
Name 5 symptoms of Prader-Willis syndrome?
Hyperphagia, obesity, intellectual disability, hypogonadism, hypotonia
Which chromosome is involved in Prader-Willis syndrome?
Chromosome 15 of paternal origin
How often is uniparental disomy responsible for Prader-Willis syndrome and Angelman syndrome?
Prader-Willis syndrome: 25% of cases are due to maternal uniparental disomy
Angelman syndrome: 5% of cases are due to paternal uniparental disomy
What do the mnemonics POP and MAMAS stand for Prader-Willis syndrome and Angelman syndrome?
- POP: Prader-Willis, Obesity/overeating, Paternal allele deleted
- MAMAS: Maternal allele deleted, Angelman syndrome, Mood, Ataxia, Seizures
What causes Angelman syndrome?
Paternally derived UBE3A is silenced Disease occurs when the maternal allele is deleted or mutated
Name 5 symptoms of Angelman syndrome?
Hand-flapping, Ataxia, severe Intellectual disability, inappropriate Laughter, Seizures
(HAILS the Angels)
Which chromosome is involved in Angelman syndrome?
UBE3A on maternal copy of chromosome 15
If disease is autosomal recessive,
what is the probability that an unaffected individual with an affected sibling is a carrier?
2/3 probability
Cystic fibrosis is the most common lethal genetic disease in patients with:
European ancestry
What is the genetic cause of cystic fibrosis?
Autosomal recessive; defect in CFTR gene on chromosome 7 (deletion; ΔF508)
What does the CFTR gene encode and what is its function?
CFTR encodes an ATP-gated Cl− channel (secretes Cl− in lungs/GI tract, reabsorbs Cl− in sweat glands)
Describe the pathophysiology of cystic fibrosis:
- Phe508 deletion —>
- misfolded protein —>
- improper protein trafficking —>
- protein absent from cell membrane—>
- decreased Cl− (and H2O) secretion->
- increased compensatory Na+ reabsorption via epithelial Na+ channels (ENaC) —>
- increased H2O reabsorption —>
- abnormally thick mucus secreted into lungs/GI tract
In cystic fibrosis, more ———reabsorption = more ——— transepithelial potential difference
- Na+ reabsorption
- negative transepithelial potential difference
Name 3 clues for cystic fibrosis diagnosis:
1. Increased Cl− concentration in pilocarpine-induced sweat test
2. Can present with contraction alkalosis and hypokalemia (ECF effects analogous loop diuretic effect) due to ECF H2O/Na+ losses via sweating and concomitant renal K+ /H+ wasting
3. Immunoreactive trypsinogen (newborn screening) due to clogging of pancreatic duct
List 4 key pulmonary manifestations of cystic fibrosis:
1. Recurrent pulmonary infections (eg, S aureus [infancy and early childhood], P aeruginosa [adulthood], allergic bronchopulmonary aspergillosis [ABPA])
2. Chronic bronchitis and bronchiectasis —> reticulonodular pattern on CXR, opacification of sinuses
3. Nasal polyps
4. Nail clubbing
List 7 key GI manifestations of cystic fibrosis:
1. Pancreatic insufficiency
2. Malabsorption with steatorrhea
3. Fat-soluble vitamin deficiencies (A, D, E, K)
4. Progressing to endocrine dysfunction (CF-related diabetes)
5. Progressing to biliary cirrhosis
6. Progressing to liver disease
7. Meconium ileus in newborns
List key male and female reproductive manifestations of cystic fibrosis:
- Infertility in males (absence of vas deferens, spermatogenesis may be unaffected)
- Subfertility in females (amenorrhea, abnormally thick cervical mucus).
List 3 treatments for improved mucus clearance in cystic fibrosis:
1. Chest physiotherapy
2. Aerosolized dornase alfa (DNase)
3. Inhaled hypertonic saline
List treatment to prevents acute exacerbations in cystic fibrosis:
Azithromycin
List treatment used for anti-inflammatory effect in cystic fibrosis:
Ibuprofen
List a treatment for pancreatic insufficiency in cystic fibrosis:
Pancreatic enzyme replacement therapy (pancrelipase)
Describe the overall use and 2 mechanisms/examples of CFTR modulators:
- Can be used alone or in combination for treatment of cystic fibrosis
- Efficacy varies by different genetic mutations (pharmacogenomics)
Mechanisms:
- Potentiators (hold gate of CFTR channel open —> Cl− flows through cell membrane; eg, ivacaftor)
- Correctors (help CFTR protein to form right 3-D shape —> moves to the cell surface; eg, lumacaftor, tezacaftor)
Name a condition that would make females more likely to have an X-linked recessive disorder
Turner syndrome (45,XO)
Describe X-inactivation (lyonization), and what can happen if skewed inactivation occurs:
Description:
During development, one of the X chromosomes in each XX cell is randomly deactivated and condensed into a Barr body (methylated heterochromatin)
If skewed inactivation occurs:
XX individuals may express X-linked recessive diseases (eg, G6PD); penetrance and severity of X-linked dominant diseases in XX individuals may also be impacted
What is the mode of inheritance for Duchenne muscular dystrophy?
X-linked recessive disorder
Duchenne muscular dystrophy is typically due to ——— or ———, resulting in ——— protein and ——— damage
(Can also result from ———)
- frameshift deletions or nonsense mutations
- truncated or absent dystrophin protein and progressive myofiber damage
- splicing errors
(Duchenne = Deleted Dystrophin)
Why is the gene involved in Duchenne muscular dystrophy susceptible to spontaneous mutations?
Dystrophin gene (DMD) is the largest protein-coding human gene; thus has an increased chance of spontaneous mutation
What is the usual role of the protein involved in Duchenne muscular dystrophy, and what does this proteins loss lead to in this disease?
- Dystrophin helps to anchor muscle fibers to the extracellular matrix, primarily in skeletal and cardiac muscles
- Loss of dystrophin leads to myonecrosis
How can Duchenne muscular dystrophy be diagnosed?
- Elevated creatine kinase and aldolase
- Genetic testing confirms diagnosis
List 5 key symptoms of Duchenne muscular dystrophy:
- Weakness that begins in pelvic girdle muscles and progresses superiorly
- Pseudohypertrophy of calf muscles due to fibrofatty replacement of muscle
- Waddling gait
- Lordosis
- Thigh atrophy