Biochemistry π§ͺ Flashcards
What are cabohydrates?
-they are organic compounds that are formed mainly of CHO but not always where is the ratio of hydrogen to oxygen is 2:1 like water they are called carbohydrates.
- they are defined as polyhydroxy aldehydes and polyhydroxy ketones or any other compounds yielding them on Hydrolsis.
What is the function of carbohydrates?
they are the main source of energy and they enter in the structure of sugar-phosphate backbone,cell membrane,glycolipids and glycoproteins. they play a role in cell recognition as well
What are monosaccharides classified according to?
They are classified according to the number of carbon atoms and active carbonyl group whether it is aldehyde or Ketone.
Triose
Glycerldehyde
Dihydroxy acetone
Tetrose
Erythrose
Erthyroluse
Pentose
Arabinose
Ribose
Xylose
Xylulose
Ribulose
Hexose
Glucose
Galactose
Mannose
Fructose
Heptose
ββ-
Sedoheptulose
What is the importance of glucose?
-It is a major source of energy for tissues and cells.
-some tissues and cells like brain and erthrocytes depends mainly on glucose as it cant oxidize on the any other alternatives for fuel.
-therefore the body keeps a fairly constant amount in the blood ranging between 70 to 110 mg/dl.
-all the ingested sugar is absorbed in the form of glucose.
-It is a changed into other forms like galactose,ribose,fructose and glygogen in other organs like the liver.
Galactose
-It is formed in mammary glands.
- It helps in the formation of lactose.
-It is a constituent Of glycolipids and glycoproteins.
Mannose
It is a constituent of glycoproteins and Amino sugar acids.
Fructose (levulose) (fruit sugar)
-It is found in the seminal fluid as to provide energy for the sperms.
-It is also a constituent in the formation of Inulin which is a polysaccharides and sucrose which is a disaccharide.
Ribose
-It enters in the structure of sugar-phosphate backbone.
-It enters in the formation of co enzymes like NAD.
-Deoxy ribose enters in the formtion of DNA.
-Ribose enters in the formation of RNA - ATP -NAD.
What are sugar derivatives?
-Sugar acids
-Deoxy sugars
-Amino sugar
-Amino sugar acids
-Glycosides
What are sugar acids?
-They are the yield of the oxidation of carbon atoms to carboxylic groups.
Firstββ> aldonic acids
Lastββ> uronic acids
Bothββ> aldaric acids βglucaric is sacharic acidβ
And ascorbic acid βvitamen Cβ which is six carbon sugar acid and it is soluble in water and optically active and must be supplied in diet.
By glucose oxidase enzymes and this technique is used in test stripes to test the amount of sugar in blood and urine
Give examples for amino sugars
-glucosamine
-Galactoseamine
βAnd they are found in glycoseamineglycans (GAGS)
And glycoproteinsβ
What are amino sugar acids?
-They are the yield of condensation reaction between acids and amino sugars like neuraminic acid which is found in neural tissues and is formed duet l the reaction between mannosamine and pyruvic acid.
What are glycosides?
They are compounds that are connected by glycosidic bonds and there are two types of glycosidic bonds O and N.
What are O-Glycosides ?
-they are compounds that contain O-glycosidic bond between and it arises by the attachment of the hydroxyl group on the sugar with the hydroxyl group on the other compound whether it is a CHO or not by removal of water.
From the examples:glycoproteins (Hydroxy amino acids) ,Glycolipids ,Disaccharides ,Poly saccharides and oligosaccharides, Cardiac glycosides βgalactose + steriod β(digitalis used for treating heart failure).
What are N-Glycosides?
-They are compounds that contain N-Glycosidic bonds between them that arise from the attachment of the hydroxyl group of the sugar with the amino group of the other compound.
For example:- DNA and RNA nucleotides.
Symptoms of diabetes
-Polyuria
-Polyphagia
-Polydipsia
How are glycosides named?
-They are named according to the sugars they contain.
E.g: Glucosides, galactosides
what do disaccharides consist of?
two monosaccharides
what are non-reducing diasaccharides?
Non-reducing disaccharides: two aldehyde/or ketone groups are involved in the linkage (anomeric C not free) e.g. sucrose (reduction happens to fehling solution)
what are reducing disaccharides?
if one of aldehyde/or ketone groups is free (free anomeric C) e.g. Lactose and Maltose.
Classification:
what are the most abundant disaccharides? βMLSβ
sucrose, lactose and maltose.
what are other names of maltose?
(malt sugar, maltose syrup)
Maltose(malt sugar, maltose syrup)
2 alpha Dextro glucose - alpha 1 4 glycosidic bond
(reducing)
isomaltose
It is formed of two Ξ±-glucose but linked together by Ξ± 1-6 glycosidic bonds. It is a reducing sugar.
cellobiose
It is formed of two units Ξ²-glucose linked together by a Ξ²1-4 glycosidic bond.
sucrose(cane sugar, beet sugar, table sugar)
Formed of Ξ±-glucose and Ξ²-fructose linked by an Ξ±-1- Ξ²-2 glycosidic bond (involving the anomeric Cs). (non-reducing)
lactose(milk sugar)
It is formed from Ξ²-galactose and Ξ²-glucose via a Ξ² (1-4) link with free anomeric C. It is a reducing sugar.
starch hydrolysis
starch is hydrolyzed by pancreatic and salivary amylase giving maltose which is hydrolyzed by maltase giving two glucose units.
starch is also be hydrolyzed by acids giving dextrins which are hydrolyzed by alpha dextrinase giving smaller units.
dextran hydrolysis
dextran is hydrolyzed into isomaltose
cellulose hydrolysis
is ts hydrolyzed by acids into cellobiose.
sucrose hydrolysis
it is hydrolyzed by sucrase into alpha glucose and beta fructose.
lactose hydrolysis
it is hydrolyzed by intestinal lactase into beta glucose and beta galactose
what are the characteristics of lactose sugar?
β’ It is the principal carbohydrate in milk and is of critical nutritional importance to mammals in the early stages of their lives.
β’ It may appear in the urine in late pregnancy and during lactation
β’ Low levels of lactase enzyme lead to undigested lactose that undergoes bacterial fermentation in the colon with the generation of large amounts of CO2, H2, and irritating organic acids.
β’ These products cause painful digestive upsets known as lactose intolerance.
what are oligosaccharides?
β’ Oligosaccharides consist of 3-10 monosaccharide units joined together by glycoside bonds. E.g. Maltotriose.
what is the existence and significance of oligosaccharides?
β’ Oligosaccharides are important as constituents of the glycolipids and glycoproteins of the cell membrane.
β’ Many secreted proteins, such as antibodies and coagulation factors also contain oligosaccharide units.
what are polysaccharides?
β’ Polysaccharides, also called glycans, consist of more than 10 monosaccharide units and/or their derivatives joined together by glycosidic linkage.
what are polysaccharides classified according to?
according to structure and function
how are polysaccharides classified structurally?
- Homopolysaccharides (homoglycans): contain only one type of monosaccharide. E.g. starch, glycogen, dextran, dextrin, cellulose, inulin.
- Heteropolysaccharides (heteroglycans): contain more than one type of monosaccharides. E.g. glycosaminoglycans (GAGs, mucopolysaccharides), agar.
How are polysaccharides classified functionally?
Polysaccharides are classified according to their function into storage and structural polysaccharides.
β’ Storage polysaccharides: starch, glycogen, dextran, and inulin.
β’ Structural polysaccharides: cellulose and agar.
starch
It is a glucosan (a-D glucose units) consists of 2 layers:
βΊ An inner linear nonbranching layer called amylose.
βΊ An outer highly branched layer is called amylopectin. The branch points occur about once every thirty linkages.
-Main storage of polysaccharides in plants.
Glycogen(animal starch)
-Glucosan
βΊIt is a highly branched molecule (branches every 10 glucose units; more branched than amylopectin). It yields a red-violet color with iodine.
-Main storage of polysaccharides in humans and animals
-It is present mainly in the liver 10% and in the skeletal muscles 1-2% and breaks down to glucose when fasting which helps in maintaining glucose levels in the blood.
dextran
-It is formed of Ξ±-glucose units (glucosan).
-It is a storage polysaccharide in yeasts and
bacteria
-Bacterial dextrans are used in laboratories as the support medium for chromatography of macromolecules and as replacement therapy in blood loss.
-Dental plaque is due to dextran synthesized from sucrose by oral bacteria.
cellulose
-It is formed of Ξ²-D-glucose units.
-It is the most abundant natural polymer found in the world. It is the structural component of the cell walls of nearly all plants.
-Cellulose is extremely resistant to hydrolysis whether by acid or by the digestive tract amylases. So, it can stimulate peristaltic movement and prevent constipation.
-The bacteria that live in the gut of ruminant animals secrete cellulase enzyme (Ξ²- glucosidase) which is effective in the hydrolysis of cellulose.
inulin
-It is formed of fructose (fructosan).
-Hydrolyzed by the enzyme inulinase in plants. It has no dietary importance in human beings as inulinase is absent in human
-It is used in the inulin clearance test to determine the rate of glomerular filtration. It can be used as a diet for diabetics.
alpha dextrin
Starch is partially hydrolyzed by acids or enzymes into dextrins and it is hydrolyzed by alpha dextrinase
-It is used as mucilage.
what are the examples of heteropolysaccharides?
agar
GAGS (glycosaminoglycans - mucopolysaccharides)
Agar
β’ A polysaccharide isolated from marine red algae.
β’ Composed of agarose and agaropectin
β’ Agarose gel is used in gel chromatography and gel electrophoresis.
β’ Nutrient agar is used in the preparation of culture media in microbiology
GAGS
β’ GAGs are long linear unbranched chains composed of a repeating disaccharide unit (acidic sugar-amino sugar) .
β’ The amino sugar: (D-glucosamine or D-galactosamine) and the amino group is usually acetylated (sometimes sulphated).
β’ The acid sugar: either glucuronic or L-iduronic
chondroitin sulfate
-glucuronic acid
-N-galactosamine (acetylated)
-sulphated
-cartilage, tendons, ligaments, bone, heart valves, aorta.
-Most abundant GAG
-protective and supportive.
keratan sulphate
-no uronic acid
-N-glucosamine (acetylated) and galactose -6- sulfate
-Sulfated
-cornea, bone,cartilage
-aggregated with chondroitin sulfate
-protective and supportive
dermatan sulphate
-L-iduronic acid
-N-galactosamine (acetylated)
-Sulfated
-skin, blood vessels, heart valves
-protective and supportive.
Usually replaces hyaluronic acid in aged skin and blood vessels
heparin
-glucuronic and iduronic acid
-Glucosamine (non-acetylated)
-More Sulfated
-Intracellular granules of mast cells lining the arteries of the lungs, liver and skin
-Anticoagulant
heparan sulphate
-glucuronic or iduronic acid
-Glucosamine (acetylated)
-Less Sulfated
-Extracellular GAG, basement membranes of cell surface
-components of the cell surface.
hyaluronic acid
-glucuronic acid
-Glucosamine (acetylated)
-Non sulfated
-synovial fluid of joints, vitreous humor
of eye, skin ECM of loose connective tissue
-shock absorbing, lubricant.
what are proteoglycans?
β’ All of the GAGs except hyaluronic acid and heparin are found covalently attached to a protein, forming proteoglycan monomers.
β’A proteoglycan monomer found in cartilage consists of a core protein to which the linear carbohydrate chains are covalently attached.
What are amino acids?
-The are the structural units of proteins, and they are obtained from proteins by acid,alkali or enzymatic hydrolysis.
What is the general structure of amino acids?
All amino acids except proline and hydroxyproline consist of:-
Carboxyl group COOH
Amino group NH2
Side chain (Characteristic to each amino acid)
What are amino acids classified according to?
-The acid they are derived from.
-The number of carboxyl and amino groups.
-Their nutritional importance.
-Their metabolism.
How are amino acids condensed?
By the reaction between COOH group and NH2 associated with removal of water forming petide bonds.
What are pure glucogenic amino acids?
-They are amino acids that can be converted into carbohydrates.
And they are All except leucine,lysine,Isoleucine,Tyrosine,Tryptophan and Phenyl alanine.
What are pure ketogenic amino acids?
-They are amino acids that can be converted into ketone bodies like Leucine.
What are mixed amino acids?
-They are amino acids that can be converted to both carbohydrates and ketone bodies like Isoleucine,Lysine,Phenylalanine,Tyrosine and tryptophan
What are essential and non essential amino acids?
-Essential amino acids: They are amino acids that are not synthesized in the body and must be taken in diet.
-Non-Essential: they are amino acids that are synthesized in the body and there is no need to be taken in diet
βVILAr HM= Ten THousand Poundsβ
Valine
Isoleucine
Lysine
Leucine
Arginine
Histidine
Methionine
Tryptophan
Threonine
Phenylalanine
And anything else is non-essential
What are basic amino acids?
They are amino acids in which the number of amino groups is more than the number of carboxylic groups like
Ar - H - Ly
Arginine
Histidine
Lysine
What are acidic amino acids?
-They are amino acids in which the number of carboxylic groups is more than the number of amino groups.
Glutamic acid
Aspartic acid
What are neutral amino acids?
-They are amino acids in which the number of carboxylic groups equal the number of amino groups.
Aliphatic (Gavil): glycine-Alanine-Valine-Isoleucine-Leucine
Containing hydroxyl(TTSH): Tyrosine-Threonine-Serine
Containing sulphur(CCM): Cystine-Cysteine-Methionine
Aromatic amino acids(TTPh):Tyrosine-Tryptophan-phenylalanine
Heterocyclic amino acids: proline-hydroxyproline
What are amino acids derived from acetic acid?
Glycine
What are amino acids derived from propanoic acid?
Alanine
Serine
Cystine
Cysteine
Phenylalanine
Tyrosine
Tryptophan
Histidine
What are amino acids derived from butyric acid?
Threonine
Methionine
What are amino acids derived from Valeric acid?
Arginine
What are amino acids derived from isovaleric acid?
Isoleucine
Valine
What are amino acids derived from caproic acid?
Lysine
What are amino acids derived from isocaproic acid?
Leucine
What are amino acids derived from dicarboxylic acids?
Glutamic acid
Aspartic acid
What are Imino acids?
Proline
Hydroxy proline
What are branched chain amino acids?
Valine, isoleucine and leucine
Describe chemical reactions of amino acids
- Reaction due to both NH2 and COOH group:
Amino acids condenese with each other by COOH group at one amino acid with of other amino acid to form peptide bond.
If 3 amino acids condense together they form Tripeptide and so on,,,,,
What are proteins?
Organic complex nitrogenous compounds of high molecular weight formed of C, H, O, N [N= 16%].
What is the biological importance of proteins?
1) Antibodies (immunoglobulin) are proteins
2) Buffer system of blood (plasma proteins).
3) Carry hormones and minerals in blood (plasma proteins), Carry oxygen (Hemoglobin).
4) Structure of cell membrane.
5) Support bone, skin, nails, and hair.
6) Hormones as insulin.
7) Enzymes are proteins.
What are proteins classified according to?
1) According to shape
2) According to Nutritional value
3) According to their chemical structure
What are the types of proteins according to shape?
Fibrous and globular
Fibrous proteins
-Long, narrow fibers
-More than 10
-Insoluble
-More stable
-Actin, Myosin, collagen
Globular proteins
-Rounded (spherical)
-Axial ratio Less than 10
-Soluble
-Less stable
-Albumin, hemoglobin, insulin
What are proteins classified to according to nutritional value?
-nutritionally rich proteinsβ>contain all the essential amino acids.
-incomplete proteinsβ->Lack one essential amino acid.
-poor proteinsβ->Lack many essential amino acids.
Give examples of proteins classified according to their nutritional value respectively.
1-caseinogen(protein of milk)
2-proteins of pulses lack methionine, proteins of cereals lack lysine.
3- zein of maize protein lacks lysine and tryptophan.
What are proteins classified into according to their chemical structures?
-simple, compound, and derived.
What are simple proteins?
On hydrolysis, they produce only amino acids.
Give examples for globular and fibrous simple proteins.
The first six are globular.
1-albumin
2-globulin
3-Glutillin
4-Prolamin
5-Protamin
6-histones
7-albuminoids(scleroproteins)