Biochemical Engineering Flashcards
What does is Red Biotechnology contain?
1) Health applications
2) Medical applications
e.g.
Gene therapy, Drug developement
What does Green Biotechnology contain?
1) Agriculture applications
2) Farming apllications
e.g.
Pest resistant crops, Probiotics for farm animals
What does white biotechnology contain?
1) Manufacturing
2) Industrial
e.g.
Biopolymer production, Biofuel-producing microalgae
What does grey biotechnology contain?
1) Environmental
e.g.
Bioremeditation of chemical spills, Gene drives to control invasive species.
What does Pink biotechnology contain?
1) Human Welfare
2) leisure
e.g.
Anti-hangover probiotics, Glowing bacterial lamp
What does Yellow BioTechnology contain?
1)Food processing
2) Nutrition
e.g.
Brewing, lactose free dairy
What does Brown Biotechnology contain?
1) Improving living conditions in arid and desertic areas
What does Blue biotechnology contain?
1) Sustaining water resources
e.g. GM fishes for fish farms wastewater
What are key properties of Cell Factories?
1) Saftety
- Non-pathogenic.
- Safe for environment.
2) Versatility
- Can utilize different substrates.
- Produce multiple products.
3) Defined metabolic and genetic background
- Genome sequence is available.
- Most important metabolic pathways are known.
What types of microorganisms are there?
- Bacteria
- Fungi
- Yeast
What cell cultures exists?
- Plant cells
- Insect cells
- Animal cells
What facts do you know about bacteria?
- Eukaryotic or Prokaryotic (compartments or not)?
- size?
- Growth?
- Low, medium or high Metabolic activity?
- Amount of medium required?
- GRAS?
- Prokaryotic (with no compartments)
- size: 0.2-20um
- Growth: t_2 = 0.2-1 hour (or longer)
- High metabolic activity
- Ease of cultivation = minimum medium required.
- Many GRAS
What facts do you know about Yeast?
- Eukaryotic or Prokaryotic?
- size?
- Growth?
- Ease of cultivation in what?
- low or high pH tolerance?
- GRAS?
- Eukaryotic
- size: 10 um
- Growth: t_2 = 2-10hour
- ease of cultivation in defined media.
- Tolerance of low pH (2-5)
- Mainly GRAS
Saccharomyes cerevisial:
- What type of microorganism ?
- What does it produce?
- Yeast
- Beer and baking yeast: ethanol
- Protein and enzyme expression
Komagataella phaffi (pichia pastoris):
- What type of microorganism ?
- What does it produce?
- Yeast
- enzyme and protein expression
- Methylotrophic (methanol utilization)
Yarrow Lipolytica:
- What type of microorganism ?
- What does it produce?
- Yeast
- Oleaginous yeast = lipid producing.
- Organic acids and sugar alcohols
- Protein and enzyme expression
What facts do you know about Fungi?
- Eukaryotic or Prokaryotic ( compartments or no)?
- size?
- Ease of cultivation in what?
- low or high pH tolerance?
- GRAS?
- Eukaryotic, with compartments
- up to 100um
- Ease of cultivation in defined media.
- Tolerance of low pH (2-3).
- Mainly GRAS
What does GRAS mean?
Generally Recognized As Safe
Aspergillus niger:
- What type of microorganism ?
- What does it produce?
- Fungi
- Produces: citric acid
Penicillium chrysogenum:
- What type of microorganism ?
- What does it produce?
- Fungi
- Produces: Penicilin.
Trichoderma reesei:
- What type of microorganism ?
- What does it produce?
- Fungi
- Produces: cellulases and hemicellulases.
What do you know about ethanol production?
- produced by?
- produced from?
- type of process (and why)?
- Bioreactor scale?
- Produced by baker’s yeast: saccharomyces cerevisiae.
- Produced from sucrose
- Fed-batch ( to avoid
catabolite repression + continuous ethanol removal to avoid excess biomass formation. - Bioreactor scale = 500m^3
What do you know about Citric Acid production
- Produced by?
- What substances are highly needed?
- What pH is needed?
- Citric acid used in?
- Produced by Aspergillus niger.
- High substrate (glucose) and oxygen needed
- Low pH
What do you know about Glutamic Acid Production?
- Produced by?
- substrate = ?
- Derived from?
- Glutamic Acid used as?
- Produced by C. glutamicum
- Substrate = cheap sugar sources e.g. starch.
- Derived from TCA (tricarboxylic acid)
- used as flavour inhancer (“umami”)
What do you know about 1,3-propanediol production?
- produced by?
- How is microorganism engineered to enable this production?
- produced by Escherichia coli.
- Metabolically enginnered by deletion of sideways.
What forms of recombinant proteins exists?
- Soluble protein (e.g. cytoplasm)
- Inclusion bodies (IB) = aggregated expressed protein
- Fusion proteins = fusion partner can make protein purification easier
What recombinant protein products exist?
- Hormones
- Growth factors
- Cytokines
- Enzymes
- Blood clotting factors
- Vaccines
- Monoclonal antibodies
Four examples of technical substrates and their contents.
1) Mono-/disaccherides
- Fruit juices (10-30%)
- starch/cellulose hydrolysates (70%)
- Glucose hydrate
2) Sucrose
- Sugar beets, sugar cane (15%-22%)
- raw suger
- molasses
3) malt extract
- fermentable sugars
- nitrogen, vitamins (1%)
4) Lactose: milk/whey (3-8%)
- Natural form or dried
- pure lactose
What is the Crabtree effect?
Higher glucose concentration in fermentation broth (>100mg/L) leads to ethanol formation in the presence of oxygen (S.cerevisiae)
What is the law of conservation?
Mass in a closed system remains the same during a chemical reaction
Matter cannot be destroyed but rearranged:
mass of educts = mass of products
What process types exists?
- Batch Process
- Semi-batch Process
- Fed-Batch process
- Continuous process
What is characteristic about a Batch process?
- All materials are added to the system at the start of the process.
- Closed through reaction
- End products removed when the reaction is complete
What is characteristic about the semi-batch process?
- Allows either input or output of mass (not both).
What is characteristic about the fed-batch process?
- Allows input of material into the system but no output.
Whats is characteristic about the continuous process?
- Allows matter to flow in and out of the system
- If rates of mass input and output are equal, then continuous process can be operated indefinetly.
Formular: Rate of accumulation of mass within system
dM_i/dt = [Accumulation] = [in]-[out]-[consumption]
Formular: Convective mass flow rate.
[convective mass flow rate] = Volumetric flow rate * m/V
Fick’s Law (Diffusion of components)
j_i=-D_i * d c_i/d Z_i
j_i = diffusion flux of component
c_i = concentration of component
D_i = diffusioncoefficient of component
Z = position (dZ = position difference)
Formular: total mass flow
total mass flow = F*ρ
F = force (A*v)
*A = area, v = velocity
ρ = density
Formular: Component mass flow (M_i)
M_i = F*c_i
F = force (A*v)
*A = area, v = velocity
c_i = concentration of component
Formular: substrate consumption rate (r_s)
r_s = r_x/ (Y_x/s) * V
r_s = substrate consumption rate
r_x = growth rate per volume
Y_x/s = yield = mass produced per substrate
How many available electrons does the following atoms have: C,H,O,P,S, N(ammonia, nitrate, molecular).
C = 4
H = 1
O = -2
P = 5
S = 6
N (amonia) = -3
N (nitrate) = 5
N (molecular) = 0
Formular: Degree of reduction?
DoR = (Available electrons_i*Number of that atom_i)/Number of carbon atoms
What are the molecular components of biomass?
- Protein: 32-55%
- Carbohydrates: 9-49%
- Lipids: 7-8%
- Nucleic Acids: 5-23%
- Ash: 5-10%
What are the growth phases in batch cultures?
- Lag
- Acceleration
- Growth
- Decline
- Stationary
- Death
What is the michalis-menten equation?
v = v_max*[S]/(K_m+[S])
What is the Lineweaver-Burke equation?
1/v=K_m/v_max*1/[S]+1/v_max
What is competitive inhibition?
And what is the formular?
- Substrate and inhibitor are similar and compete for binding to the enzyme.
v = v_max* [S]/(k_m*(1+[S]/[I])+[S])
What is uncompetitive inhibition?
And what is the formular?
Inhibitor does not bind the free enzyme but the enzyme-substrate complex.
v = v_max*[S]/(k_m+[S] *(1+([I]/K_I)))
K_I = inhibitions constant
What is non-competitive inhibition?
And what is the formular?
Inhibitior can bind to enzyme or enzyme-substrate complex.
v = v_max[S]/((1[S]/K_I)*(K_m+[S]))
Formular: Mass balance accumulation in bioreactor.
[Accumulation] = V_R* dc_i/dt + c_i*dV_R/dt
What is the T-R-Y metrics?
- Titer of product [g/L] “How much?”
- volumetric Rates [g/L*h]
“How fast?” - Yield [g/g]
“How efficient?”