BIOCHEM Flashcards
(40 cards)
What kind of bond is used for Glycogen?
ALPHA 1,4 glycosidic bond
What sugars make up UDP-glucose ?
glucose (hexose) and ribose (pentafurnaose, that has C2 and C3 OH Groups that are cis and C3 and C4 groups that are trans
In glycogen, what kind of bonds form due to branching?
Alpha 1, 6 glycosidic bonds
Which molecules have dissociate the most vs least? high dissociation states
STRONG ACIDS dissociate the MOST
Molecules with High Negative charges, dissociate the Least
Describe the emission for gamma decay, Beta - decay, Beta plus and nuclear fission
Gamma decay : emission of PHOTONS
Beta - decay: emission of an ELECTRON
Beta + decay: emission of a PROTON
Nuclear Fission: emission of a NEUTRON
which genomic regions are rich in repeats?
Heterochromatin, telomeres and centromeres
What are the bonds found in DNA?
N-glycosidic linkage between deoxyribose and the nitrogenous base; van der Waals and hydrophobic interactions between bases.
Distinguishes between partial penetrance and full penetrance
Partial penetrance: when an individual may or may not develop disease
full penetrance: an individual will develop disease
How can you achieve most specific binding of DNA to a ligand?
To achieve the most specific binding possible , the biochemist should aim to have MANY DNA molecules for each ligand (LARGE DNA TO LIGAND ratio)
If there are many ligand molecules and DNA is the limiting factor, the ligand might bind less specifically
What is the environment of DNA?
DNA has a inner region that is hydrophobic due to nitrogen bases and outer region that is hydrophilic (with region surrounding DNA and hydrophilic phosphate backbone)
which pathway is NADPH generated and what is its role?
NADPH is produced in Pentose Phosphate pathway.
NADPH is a reducing agent and it participates in reduction reactants
In order to replicate itself, what does a rapidly dividing cell need?
rapidly dividing cell needs precursors for DNA synthesis, such as pentose rings. these precursors are need for DNA synthesis to occur.
what conditions occur for lactic acid production ?
Lactic acid production occurs under ANAEROBIC conditions , where you regenerate NAD+ needed for glycolysis
What happens to NADH under aerobic conditions ?
under aerobic conditions, NADH is converted to NAD+ through Electron transport chain, where O2 is the final electron acceptor
What happens when there is a competitive inhibitor ?
-Km increases
-Vmax stays the same
competitive inhibitor interferes with enzyme interacting with substrate.
-the inhibitor also slows down the rate that substrate converts into product (hence substrate increases, while product decreases)
Where does ketogenesis occur?
mitochondria of liver cells
What occurs in individuals with Ketoacidosis ?
Individuals with Ketoacidosis:
- will have low blood pH (increase H+)
-increased respiratory rate (ventilation) which will allow more CO2 to be expelled in order to increase blood pH
-also bicarbonate excretion will decrease (so you can reabsorb more)
What changes occur in an individual with untreated type 1 diabetes ?
Individual with untreated type 1 diabetes:
-Excess glucose in blood. This glucose cannot enter cells to be used for energy
-This causes increased use of fatty acid oxidation (breakdown) and protein catabolism for energy
-leads to increased Acetyl coA and and increased Ketone bodies to be used by brain for energy in absence of glucose.
-This increased FA oxidation and ketogenesis caused decreased blood pH leading to need for Increased ventilation to excrete CO2 and bring blood pH back to normal
which energetic processes occur in the mitochondria ?
-Citric acid cycle
- electron transport
-oxidative phosphorylation
What must happen for Krebs cycle to occur?
Kreb cycle occurs in the mitochondrial matrix
-NAD and FAD get reduced
-Two GTP molecules are produced per glucose
(oxygen is indirectly required for krebs to occur)
which process requires oxygen for it to occur
Oxygen is required in the ELECTRON TRANSPORT CHAIN for NADH and FADH2 to be oxidized
what is product of both glycolysis and electron transport chain ?
ATP
In anaerobic conditions what process can occur and how many ATP are produced. How many ATP would be produced for 3 molecules of glucose ?
For anaerobic conditions, only GLYCOLYSIS can occur. So for every molecule of glucose 2 Net ATP are made
-hence for 3 molecules of glucose (3 x 3 net atp) 6 ATP will be Made
Describe what happens to the pH in the electron transport chain
In the electron transport chain, protons are pumped across the inner cell membrane, out of the matrix and into the inner membrane space, causing Increase in pH of the matrix