bio Flashcards
explain the formation of hydrogen between water and other polar molecules
hydrogen bonds form between hydrogen and a strongly electronegative element such as oxygen. in water hydrogen bonding helps to hold the water molecules together making it a stable substance
why does methane have a lower boiling point than water
because methane does not have any hydrogen bonds, weakly held together.
use an example: how are hydrophobic/philic molecules transported in blood
Hydrophilic molecules, which are attracted to water, require transport proteins to help them cross the cell membrane. Hydrophobic molecules, which repel water, can directly diffuse through the membrane via passive transport. Both types of molecules rely on the membrane’s selective permeability.
why is amylopectin, even though similar to glycogen, less soluble?
more 1-6 glycosidic bonds in glycogen, more branching, more surface area to interact between molecules of water and glycogen, more solubility
what makes the amino acids in proteins unique
r group
define primary secondary tertiary quaternary structure
primary - sequence of amino acids in polypeptide chain
secondary - formation of α-helices and β-pleated sheets stabilised by hydrogen bonding. The secondary structure is the way a polypeptide folds in a repeating arrangement to form α-helices and β-pleated sheets
tertiary - tertiary structure is the further folding of the polypeptide stabilised by interactions between R groups
The tertiary structure is the way the polypeptide chain coils and turns to form a complex molecular shape (i.e. the 3D shape)
It is caused by interactions between R groups; including H-bonds, disulfide bridges, ionic bonds and hydrophobic interactions
quaternery - the quaternary structure exists in proteins with more than one polypeptide chain
Which layer of the veins and arteries contains the muscle and elastic fibres?
Tunica media
Which type of cell secretes mucus into the lumen of the small intestine to facilitate the movement of the chyme?
Goblet cell
State the name of the molecule that CDKs attach to proteins in order to activate them.
phosphate group
define detritivore
Detritivores are a type of heterotroph, or organisms that consume dead and decaying organic matter known as detritus to obtain energy and nutrition.
define saprotroph
Saprotrophs are heterotrophs that obtain their organic nutrients from dead organisms by external digestion.
Saprotrophs are heterotrophs that ingest the tissues of dead organisms and waste material by secreting enzymes onto their food and digesting it externally before absorbing the products of this digestion. .
define autotroph
Autotrophs make use of abiotic factors to produce their own food.
what is nutrient cycling
The nutrient cycle is a system where energy and matter are transferred between living organisms and non-living parts of the environment. This occurs as animals and plants consume nutrients found in the soil, and these nutrients are then released back into the environment via death and decomposition.
whats reproductive isolation
Reproductive isolation of populations can be temporal, behavioural or geographic. Reproductive isolation occurs when barriers prevent two populations from interbreeding – keeping their gene pools separate.
what are abiotic factors
An abiotic factor is a non-living part of an ecosystem that shapes its environment. In a terrestrial ecosystem, examples might include temperature, light, and water.
what is speciation
formation of a new species from an original, ancestral lineage
how can reproductive isolation lead to speciation
reproductive isolation is when two or more populations of the same species are prevented from interbreeding. if the populations never interbreed then gene mixing between the populations stops and evolutionary forces such as natural selection may act differently on the populations. over time the populations may change to the point of not being able to interbreed and produce viable fertile offspring in which the case they would now be considered seperate species
how does the ocean become more acidic
Typically, when carbon dioxide is dissolved in the ocean, it combines with water molecules to form carbonic acid (H2CO3)
The carbonic acid then dissociates to form bicarbonate ions (HCO3–) and hydrogen ions (H+)
The ocean also contains carbonate ions (CO3–), which are absorbed by coral and molluscs to form calcium carbonate (CaCO3)
Calcium carbonate is used to form the hard exoskeletons of reef-building corals and is used by molluscs to develop shells
H+ ions can reduce the stock of carbonate ions in the ocean by combining with it to form bicarbonate
Hence, the levels of H+ ions must be kept low to ensure that their is sufficient stock of carbonate ions for aquatic organisms
As a result of deforestation and the increased burning of fossil fuels, atmospheric carbon dioxide concentrations have increased
With more CO2 being absorbed by the oceans, there is an associated increase in the production of H+ ions
These H+ ions lower the pH of the ocean, causing acidification (ocean pH has dropped ~0.2 since the industrial revolution)
The H+ ions will also combine with carbonate ions, reducing the amounts available to marine organisms
This will result in the formation of thinner, deformed shells and reduce the population numbers of reef-building corals
The reduction in pH will also dissolve calcium carbonate structures, enhancing the damage to shells and corals
Autotrophs absorb both dissolved carbon dioxide and hydrogen carbonate ions and use them to produce organic compounds
how is calcium carbornate and limestone created
When the hydrogen carbonate ions come into contact with the rocks and sediments on the ocean floor, they acquire metal ions
This commonly results in the formation of calcium carbonate and the subsequent development of limestone
Living animals may also combine the hydrogen carbonate ions with calcium to form calcium carbonate
This calcium carbonate forms the hardened exoskeleton of coral, as well as forming the main component of mollusca shells
When the organism dies and settles to the sea floor, these hard components may become fossilised in the limestone
how is methane produced
Methane is produced from organic matter in anaerobic conditions by methanogenic archaeans and some diffuses into the atmosphere or accumulates in the ground
what are methanogens
Methanogens are archaean microorganisms that produce methane (CH4) as a metabolic by-product in anaerobic conditions
what are anaerobic conditions
Wetlands (e.g. swamps and marshes)
Marine sediments (e.g. in the mud of lake beds)
Digestive tract of ruminant animals (e.g. cows, sheep, goats
why is the methane level in atmosphere not very large even though it has significant quantity
The lifetime of methane gas once it reaches the atmosphere is around 10-12 years · This is because methane is oxidised in the atmosphere.
what determines the impact of a gas in the atmosphere
The impact of a gas depends on its ability to absorb long-wave radiation as well as its concentration within the atmosphere
- Ability to absorb long-wave radiation
Gases that have a greater capacity to absorb long-wave radiation will have a greater warming impact (per molecule)
- Concentration within the atmosphere
The greater the concentration of a gas, the greater its warming impact will be within the atmosphere
The concentration of a gas will be determined by both its rate of release and persistence within the atmosphere
The overall impact of a greenhouse gas will be determined by the combination of both these factors
Methane has a larger capacity to absorb long-wave radiation than carbon dioxide, but is significantly less abundant
Water vapour enters the atmosphere rapidly but only remains for short periods, while carbon dioxide persists for years
Human activity is increasing the amount of greenhouse gases (except water vapour) and hence increasing their impact
what are the consequences of ocean acidification
An increase in ocean acidification as a result of elevated anthropomorphic CO2 emissions could have several consequences:
The disappearance of coral reefs could result in a loss of shoreline protection and habitat, altering coastal ecosystems
The loss in revenue from tourism and food industries is predicted to cost economies upwards of $1 trillion by 2100
Increasing the dissolved CO2 levels in oceans would cause invasive species of algae to flourish (more photosynthesis)
define heterozygous
each of the homologous chromosomes contain a different allele for the gene
whats a homologous chromosomes pair
each chromosome of a homologous pair comes from a different parent
they contain the same sequence of genes for the same trait, but the versions of the genes (alleles) on each chromosomes may differ
whats the significance of genes existing as alleles
alleles are different forms of a gene coding for the same trait. different alleles provide phenotypic variation for the expression of a gene.
define mutation
gene mutation is a change in the nucleotide sequence of a section of DNA coding for a specific trait. New alleles are formed by mutation.
what chemicals can cause mutagens
benzene
what is a mutagen
A mutagen is a chemical or physical agent capable of inducing changes in DNA called mutations.
what type of mutation/disease is sickle cell anemia
sickle cell anemia is a autosomal recessive disease caused by a point mutatin
why is sickle cell anemia more prevelent in places with high malaria
he malaria parasite, Plasmodium, struggles to survive in sickled red blood cells, which tend to sickle under low oxygen conditions, making them less hospitable for the parasite. Additionally, sickled cells are more likely to be removed by the spleen, reducing infection rates. This protective effect has contributed to the persistence of the sickle cell trait in malaria-endemic regions, demonstrating an example of natural selection.
whats ice age
Inherited variation exists within the population
Competition results from an overproduction of offspring
Environmental pressures lead to differential reproduction
Adaptations which benefit survival are selected for
Genotype frequency changes across generations
Evolution occurs within the population
what are 3 ways of genetic variation
Mutations – Changing the genetic composition of gametes (germline mutation) leads to changed characteristics in offspring
Meiosis – Via either crossing over (prophase I) or independent assortment (metaphase I)
Sexual reproduction – The combination of genetic material from two distinct sources creates new gene combinations in offspring
the binomial name system what comes first
genus in caps then species
name and identify the 3 domains of life
Eukarya – eukaryotic organisms that contain a membrane-bound nucleus (includes protist, plants, fungi and animals)
Archaea – prokaryotic cells lacking a nucleus and consist of the extremophiles (e.g. methanogens, thermophiles, etc.)
Eubacteria – prokaryotic cells lacking a nucleus and consist of the common pathogenic forms (e.g. E. coli, S. aureus, etc.)
whats the pneumonic for taxonomy
katie perry comes over for grape soda
wings in birds and bats. analogous or homologous
analogous
explain the figwort situation, why was it reclassified
Until recently, figworts were the 8th largest family of flowering plants (angiosperms), containing 275 different genera
This was problematic as many of the figwort plants were too dissimilar in structure to function as a meaningful grouping
Taxonomists examined the chloroplast gene in figworts and decided to split the figwort species into five different clades
Now less than half of the species remain in the figwort family – which is now the 36th largest among angiosperms
difference between introns and extrons
introns are non coding part /region of dna
extrons are protein coding regions of dna
define chromatin, chromatid, chromosome
Chromosomes: Chromosomes are long, coiled structures made of DNA and proteins that carry genetic information and are found in the nucleus of cells.
Chromatin: Chromatin is the less condensed form of DNA and proteins found in non-dividing cells, which allows for gene expression and DNA replication.
Chromatids: Chromatids are the two identical halves of a duplicated chromosome that are joined together at the centromere and separated during cell division.
whats the word starting with t that was observed through the davson danielli model
trilaminar
where does the pancreas secrete enzymes into
lumen
what is secreted by the pancreas
amylase, lipase, endopeptidase
what remains undigested
cellulose
food travels down oesophagus as a b__
bolus
whats the movement of contraction for digestion
Continuous segments of longitudinal smooth muscle rhythmically contract and relax (perstalsis)
what is segmentation
Segmentation involves the contraction and relaxation of non-adjacent segments of circular smooth muscle in the intestines
Segmentation contractions move chyme in both directions, allowing for a greater mixing of food with digestive juices
While segmentation helps to physically digest food particles, its bidirectional propulsion of chyme can slow overall movement
features of villi
Microvilli – Ruffling of epithelial membrane further increases surface area
Rich blood supply – Dense capillary network rapidly transports absorbed products
Single layer epithelium – Minimises diffusion distance between lumen and blood
Lacteals – Absorbs lipids from the intestine into the lymphatic system
Intestinal glands – Exocrine pits (crypts of Lieberkuhn) release digestive juices
Membrane proteins – Facilitates transport of digested materials into epithelial cells
whats something that dialysis tubing is not but membranes are
Unlike the membranes of living cells, dialysis tubing is not selectively permeable based on charge (ions can freely cross)
what did william harvey deduce/propose
arteries and veins part of a singular network
heart acts like pump
two circulation loops
double circulation
whats atherosclerosis
plaque buildup via fatty deposits
define pathogen
disease causing agent
structure of aveleous
They have a very thin epithelial layer (one cell thick) to minimise diffusion distances for respiratory gases
They are surrounded by a rich capillary network to increase the capacity for gas exchange with the blood
They are roughly spherical in shape, in order to maximise the available surface area for gas exchange
Their internal surface is covered with a layer of fluid, as dissolved gases are better able to diffuse into the bloodstream
what does surfactant do
reduce surface tension
causes and consequences of emphysema
Emphysema is a lung condition whereby the walls of the alveoli lose their elasticity due to damage to the alveolar walls
The loss of elasticity results in the abnormal enlargement of the alveoli, leading to a lower total surface area for gas exchange
The degradation of the alveolar walls can cause holes to develop and alveoli to merge into huge air spaces (pulmonary bullae)
The major cause of emphysema is smoking, as the chemical irritants in cigarette smoke damage the alveolar walls
The damage to lung tissue leads to the recruitment of phagocytes to the region, which produce an enzyme called elastase
This elastase, released as part of an inflammatory response, breaks down the elastic fibres in the alveolar wall
Elastase activity can be blocked by an enzyme inhibitor (α-1-antitrypsin), but not when elastase concentrations are increased
A small proportion of emphysema cases are due to a hereditary deficiency in this enzyme inhibitor due to a gene mutation
Common symptoms of emphysema include shortness of breath, phlegm production, expansion of the ribcage, cyanosis and an increased susceptibility to chest infections
main purpose of myelin sheath
he main purpose of the myelin sheath is to increase the speed of electrical transmissions via saltatory conduction
In myelinated neurons, the action potentials ‘hop’ between the gaps in the myelin sheath called the nodes of Ranvier
This results in an increase in the speed of electrical conduction by a factor of up to 100-fold
where is melatonin produced
pineal gland
purpose of melatonin
control circadian rythyms