BECOM Final (High Yield) Flashcards
Saturated hydrocarbons
No double bonds
Unsaturated
One or more double (or triple) bonds
Oxidation
Addition of O, N, S or removal of electrons (us. attached to hydrogen as H●)
Reduction
Addition of hydrogen (electrons) or removal of O, N, S
Complete oxidation yields
CO2 and H2O
Amino acid + Amin acid form
amide (peptide) bond
Zwitterion
molecule having separated positively and negatively charged group
ex. @ pH 7.4 carb acid ionized and amino group pronated
Dextrose =
glucose
sucrose =
glucose + fructose
pyranose =
6 carbon ring
furanose =
5 carbon ring
M (molarity) =
mol / L
m (molality) =
mol / Kg
Activation energy
amount of energy need to reach a transition state making a reaction occur
Four Major Biochemical Macromolecules
Proteins (amino acid polymer)
TAGs (lipid polymer)
DNA, RNA (nucleic acid polymer)
Polysaccharide (carbohydrate polymer)
anabolism and catabolism occur by
condensation and hydrolysis
ATP’s phosphate bonds are
Phosphoanhydride bonds
Substrate level phosphorylation
direct transfer of a phosphoryl group from one compound to ADP (or GDP)
ex. glycolysis
Oxidative phosphorylation (OXPHOS)
a process in which oxidation of carbon substrate provides reduced coenzymes. These reduced coenzymes are used to establish a proton gradient. The natural dissipation of this gradient is coupled to the production of ATP from ADP.
ex. ETC
Major cofactors involved in central metabolic pathway
NADH
NADPH
FADH2
FMNH2
Metabolic need for oxygen
Oxygen takes up H+ making a gradient for the ETC.
Final e- acceptor
Kwashiorkor
Adequate total calories with deficiency in protein content
Marasmus
Inadequate calories with respect to protein and carbohydrate
pyruvate -> lactate (enzyme and cofactor used)
pyruvate dehydrogenase (NADH -> NAD+)
Where does glycolysis, pyruvate oxidation of acetyl CoA, Kreb cycle, and ECT occur
cytosol
matrix of mitochondria
matrix of mitochondria
intermembrane space
Thermogenin (UCP-1)
acts as an uncoupler in brown adipose to provide heat
DNP
unnatural uncoupler that binds H+ in high concentration and release H+ at low concentrations
Rotenone
Cyanide and carbone monoxide
oligomycin
complex I
complex III
ATP synthase
Thiamine
B1
part of pyruvate dehydrogenase complex
Niacin
B3
component of NAD (contains part that gets reduced)
Pantothenic Acid
B5
component of CoA
Cobalamin
B12
one carbon carrier
stored in the liver
Absorption of B12
- R-binders (gastric mucosa) bind B12 and are carried to small intestine where protease (pancreases) break down R-binders releasing B12 so intrinsic factors (parietal cells) can bind to B12 and the complex can be absorbed in the ileum
- intrinsic factor unbinds B12 in blood where transcobalamin binds B12 and carries it to liver (storage) or other tissues (use)
primary protein bond
covalent
secondary protein bond
hydrogen
Tertiary and Quaternary bonds
hydrogen bonds, LDF, Salt bridges, disulfide bonds
Phosphorylation post translation modification (amino acids and why)
add phosphate to serine, threonine, and tyrosine
-OH group on the side chain undergoes condensation reaction with phosphate
Glycosylation post translation modification
attach N (asparagine) or O (serine threonine and tyrosine) to amino acid side chain
Ubiquination post translation modification
add ubiquitin to lysine residue of a target protein for degradation
Cofactor
An inorganic or organic molecule require by a protein for activity (e.g. Zn++)
Coenzyme
An ORGANIC cofactor (e.g NAD, FAD)
Prosthetic group
a tightly bound co-factor (e.g. Heme) that is COVALENTLY bonded
Forces that stabilize proteins (covalent and non covalent)
Covalent: disulfide
Non covalent: H bonds, Ionic (salt bridges), Hydrophobic
How do reducing agents denature proteins
they break sulfide bonds
Denaturing of proteins
Heat pH Organic solvents Detergents Ionic Strength Reducing agents (break disulfides) Mechanical stress (shaking)
Lysosomal Protein Turnover
EXTRACELLULAR proteins taken into cell and shuttled to lysosome where they are broken down by proteases called CATHEPSIN (cysteine derivative)
The Ubiquitin-Proteosome Pathway
INTRACELLULAR proteins are tagged by 4 ubiquitin at a lysine residue and carried to proteasome were they are degraded and recycled
-(ATP dependent process)
Metabolic acidosis
Low pH
Low HCO3-
-Increased production of metabolic acids (eg. lactate from anaerobic respiration) (low o2) or failure to excrete acids (kidney problems)
Metabolic alkalosis
High pH
High HCO3-
Respiratory acidosis
Low pH
High CO2
-hypoventilation (shallowing breathing)
Respiratory alkalosis
High pH
Low CO2
-hyperventilating
Ferrous
2+
Ferric
3+
Cooperativity bindig
as more oxygen binds to Hb the affinity for oxygen increases (sigmoidal curve)
Bohr effect
Higher CO2 (lower pH; tissue side) -> O2 affinity drops -RIGHT SHIFT
Where does CO2 and 2,3 BPG binds on Hb
- terminal amine (not heme)
- middle negative region (squeezes O2 out)
Haldane effect
high affinity for CO2 decreases when high O2 concentrations
why does HbF have a higher affinity for HbA
2,3 BPG cant bind to HbF
Hydroxyurea
medication used to induce more HbF in sickle cell pateints
sickle cell anemia cause
Glutamate (negative) -> valine (no charge)
Cyanosis
is the appearance of a blue or purple coloration of the skin or mucous membranes due to the tissues near the skin surface having low oxygen saturation.
Left shift and right shift in sigmoid curve caused by
carbon monoxide poisoning and Bohr effect
hydrolase
A + H2O -> B + C
Oxidoreductase
catalyzes oxidation or reduction reactions
Lyase
cleaves C-C, C-S, or C-N bonds
Transferase
Ax + B -> A + Bx
Isomerase
two compounds with same formula but different arrangements
Ligase
A + B -> AB
allosteric reg. binds
non covalently at a site away from active site (allosteric site)
Acetylcholinesterase catalytic triad
serine histidine and glutamate
Uncompetitive inhibitor
Inhibitor binds ES but ONLY WHEN active site is occupied by substrate.
Suicide inhibitor
bind to active site (covalently), modifying active site
α-amylase
cleaves α-1,4 linkages between glucose residues
-Product: Dextrins (linear and branched oligosaccharides)
Pancreatic α-amylase
cleaves α-1,4 linkages
- Product: dissacharides (maltose, isomaltose), trisaccharides (maltotriose), oligosaccharides (limit dextrins)
Sucrase-isomaltase
splits sucrose, maltase, maltotriose, dextrins
Lactase
hydrolyzes ß-1,4 bond of glucose and galactose
Sucrase
hydrolyzes α-1,2 bond of glucose and fructose
Maltose =
glucose + glucose
Lactose =
galactose + glucose
Lactose intolerance
Lactase Deficiency
Glycogen polymer form and why
polymer of (α1,4)-linked glucosyl units with (α1,6)-linked branches every 8-12 residues.
- Minimizes osmotic effects of intracellular glucose
- The highly branched structure permits rapid glucose release from glycogen stores
GLUT1
RBC
GLUT2
Liver & pancreatic B cells (insulin release)
GLUT3
Brain
GLUT4
Skeletal muscle & adipose
-insulin responsive
GLUT5
Fructose transporter in intestine luminal epithelium and sperm
Mutarotation
Beta glucose (break) Alpha glucose
PRPP is used in
- De novo synthesis of both purine & pyrimidine nucleotides
- The salvage of both purine & pyrimidine bases
- The synthesis of NAD from tryptophan
Inhibitors and activators of purine synthesis?
Inhibitors: AMP ADP GMP ATP GDP GTP
Activator: PRPP
Lesch-Nyhan Disease
Deficiency in HGPRTase
Purine synthesis
ribose sugar -> phosphate -> base
Hereditary Orotic Aciduria
(high level of orotic acid)
-Orotate phosphoribosyl transferase def.
Thioredoixin
UDP -> dUDP then dUMP -> dUTP through folate cycle
Thioredoixin
UDP -> dUDP then dUMP -> dUTP through folate cycle
phospholipase 1
cleave at sn1
phospholipase 2
cleaves at sn2
phospholipase C
cleaves phosphate closer to sn3
phospholipase D
Cleves phosphate closer to charged head group
HMG-CoA pathway
makes cholesterol
7-a-hydroxylase
makes bile salts out of cholesterol
VLDL
takes TAGs from liver to tissue (endogenous)
Chylomicron
take TAGs from intestine to liver (exogenous)
LCAT
in HDL takes cholesterol -> cholesteryl ester
-keeps cholesterol gradient
ApoCII
activates LPL (tags -> glycerol + FA)
glycerolkinase
take glycerol from VLDL and chylomicron to make TAG
acetyl CoA carboxylase
FAs synthesis rate limiting enzyme
-needs B7 (biotin)
Thromboxane
- TXA2
- promates aggregation of platelets and vasocontriction
- COX1
- inhibits prostacycylin
Prostacyclin
- PGI2
- inhibits platelet aggregation and stimulates vasodilation
- COX2