Bacteriology Flashcards
Bacteria are prokaryote and binary fussion
T
Bacteria
- Size
- Smallest
- Largest
- Longest
- .4-2 um
- Mycoplasma
- B. anthracis
- Borrelia
1.Spore contains
2. Spore forming org.
3. Terminal swollen spores
4. Central
5. Sagged terminal
6. Dye for spore
7. Color of spore
- Dipicolinic acid
- Bacillus, clostridium
- T. tetani
- B. athracis
- C. botulinum
- Scaheffer and fulton
- Greef - malachite green (red bg - safranin)
- Pili aka (usually gram neg)
- VF pili - attaches to host - 1st step infectiom
- Gene conjugation
- Fimbriae
- Common pili (n. gonorrhea)
- Sex pili (e.coli)
Prevents phagocytosis - present in s. pyogenes and mycobacterium
Cell wall
1. M protein - s. pyo
2. Mycolic - mycob
Capsule
- Capsular swelling test
- Polysaccharide capsule
- Hyaloronic acip capsule
- Polyribosyl ribitiol phosphate
- Alginate capsule
- Neufeld quellung
- S. pneumoniae, K. pneumoniae, N. meningitis
- Pastuerella multocada
- H. influenza
- P. argeuginosa
Capsule - responsible for mucoid colonies
- Presumptive test for listeria (tumbling)
- Flagella stain
- C. Media
- result
- Hanging drop
- Grays, leifson
- SIM
- Growth outside the line
Spiral org -axial/periplasmic flagella
Other tumbling - p. multocada
Movement of non motile
Brownian
2 mtds can kill spores
responsible for resistance
- Incineration
- Glutaraldehyde (3-10hrs)
Biological Indicator
- Chemical mtd
- Ionizing radiation
- Oven
- Autoclaving
- B. subtilis var globijii
- B. pumilus
- B. subtilis
- B. stearothermophilus
- Twitching motility
- Gliding/sliding motility
- Darting motility
- Shooting star motility
- Corkscrew motility
twitch/glinde - due to pilose not flagella
- k. kingae
- Campylobacter spp.
- C. gingivalis
- V. cholera
- L. monocytogenes
- C. mesnili in para
- Inclusion bodies function
- IB in c. diptheriae
- M. tuberculosis
- C. trachomatis
- Amoeba
- Nutrient/food storage
- Babes ernst bodies volutin
- Granules
- Halberstaedter prowazek glycogen
- Chromatoidal bodies
cause neurological dse, mad cow dse, creutzfeld jacob syndrome, bovine spongiform encephalopathy
prions
DETECT THE PRESENCE OF ENDOTOXIN IN BODY FLUIDS
use aqueous extract of horseshoe crabs
+ clumping
Limulus lysate test
exo - protein
endo - lipopolysaccharide
- uptake of naked/free dna
- acquire dna from bacteriophage (virus infects bacteria)
- miniature chromosome, vf, R - antibiotics
- transformation
- transduction
- plasmid
Category for each bioterrorism:
1.C
2.A
- hanta and nipah virus - emerging, can be engineered for mass spread
- b. anthracis, c. botulinum, y. pestis, f. tularensis - easily transmitted, high mortality
moist heat - fractional sterilization
- 100 c - 30mins, 3 days, arnold sterilizer, flowing steam
- 75-80 c - 2 hrs, 3 days, inc. protein - lowenstein jensen, evaporation
dry heat - incineration (870-980c), oven (160-180c), cremation, flaming
- tyndallization
- inspissation
- chemical sterilants aka
- most used chemical sterilant for materials that cannot be autoclaved
- for surgical instruments, cold sterilization
- sterilize hepa filters
- biocides
- ethylene oxide
- peracetic acid
- formaldehyde vapor, vapor hydrogen peroxide
Antiseptics - skin only
- most commons
- best antiseptic
- for wounds
- iodine form
- 70% ethyl alcohol
- iodophor
- 10% hydrogen peroxide
- iodine tincture (alcohol), iodophor (detergent)
disinfectants - surfaces only
- for blood spillage
- contact for hbv
- for hiv
- standard disinfectants (high conc) - hospital use
- 1:10 sodium hypochlorite
- 10 mins
- 2 mins
- phenols - lysol, carbolic acid
blood bag contaminant
1. rt
2. y. enterolitica, serratia, p. fluorescence at what temp.
- s. epidermidis, b. cereus, c. acnes
- 4c
ace
self
blood pathogens
- e.coli
- p. aeruginosa
- s. aureus - most common (sepsis)
cleanse - 70-95% alcohol - iodine scrub - alcohol rinse (chlorhexidine - subs)
preferred blood vol. for blood culture
- adult
- pedia
- infants
- emerg. - antibiotics asap
- > 20ml
- 1-20ml
- 1-5ml
- 40ml once
thiol broth/ard (mg sulfate) - if px is on antimicrobial
isolates for csf
- s. pneumoniae
- n. meningitides
- h. influenzae
urine sample
- cause of uti in young female
- uti in older/ w/ catheter
- uti in pedia
- uti w/ recent sexual intercourse
- colony ct = uti
- e.coli
- klebsiella, e. faecalis
- s. epidermidis
- s. saprophyticus
- > 100,000
bartlett’s classification - <10 sec, >25pmn = true sputum
t
- gold std for digestion and decontamination - m. tb
- for p. aeruginosa, proteus
- n-acetyl-l-cysteine (dige) w/ 5% sodium hydroxide - naoh (decon)
- 5% oxalic acid
throat swab/nasophargyngeal swab
- major throat pathogen
- normal throat flora
- naso detects - ; identify -
- swab for bacterial
- swab for viral
- s. pyogenes
- viridans strep
- detect - n. meningitidis ; identigy - h. influenzae, b. pertussis
- dacron, calcium alginate
- dacron, cotton, rayon fibers
stool
- git pathogens
- sample for bacterial inxn
- parasites infxn
- media for stool culture
- salmonella, shigella
- 3 samples - 3 days
- 3 samples - 10 days
- emb, ssa, mac
gastric aspirate - collect early in morning and before meal - neutralized w/
sodium bicarbonate w/in 1hr
stain
- capsular stain
- spore stain
- flagella
- metachromatic granules
- polar bodies
- spirochetes (borrelia - hema)
- taylor, anthony, hiss, muir
- schaeffer and fulton
- grays, leifson
- meth. blue, albert, neisser, burke
- wayson, meth. blue
- levaditi
legionella, b. pertusis - immunofluorescence
gram stain control
- +
- -
- s. aureus
- e.coli
huckers modification = cv + ammonion oxalate - fungi +
modified afs - cryptosporidium - decolorizer
sulfuric acid
common- 3% acid alcohol (ziehl/kinyoun), 0.5% acid alcohol (auramine-rhodamine)
acid fast org - difficult to stain and decolorize due to
mycolic acid/ hydroxymethoxy acid
afs
- diff. m. smegmatis - blue ; m. tuberculosis - red
- diff. m. leprae - red ; m. tb - blue
- det. m. leprae - red
- pappenheim - urine
- baumgartens - tissue
- fite faraco
transport media
- for neisseria
- stool pathogens
- respiratory
- viral transport media
- for s. agalactiae
- jember, transgrow
- cary blair
- amie
- stuart
- todd hewitt and lim broth w/ colistin nalidixic acid
antimicrobials - function of bactericidal (kills)
- penicilin
- vancomycyin
- quinolones
- aminoglycosides
antimicrobials - function of bacteriostatic (inhibit)
- tetracyline
- chloramphenicol
- streptomycin
- erythromycin
1st 2 are broad
cell wall inhibitors
- beta lactam
- glycopeptide
additional
* cycloserine
* bacitracin
- penicilin, cephalorsporin, carbapenems, monobactam
- teicoplanin, vancomycin (treat MRSA)
TOC for entero. infection
- aminoglycosides
- sxt
- cephalosporins
- target - bacterial enzyme
- treat - uti
nitrofurantoin
- target - cell membrance function
- for gram -
- polymyxin
- colistin
- target - folic acid synthesis
- treat - diarrhea, uti
sxt
target - nuleic acid synthesis
- fluoroquinolones
- rifampicin
- ciproflaxacin (severe pneumonia)
- ofloxacin
- levofloxacin
kirby bauer - disk diffusion (MHA)
- ph
- depth of agar
E. coli
* thymidine - minimal/absent
* inc - false (R)
P. aeruginosa
* calcium (25mg/dl), mg (12mg/dl)
* inc - dec. amino. (p. aeruginosa), tetra (all org)
- 7.2-7.4
- 3.5 mm
False (S)
* too thin
* very dry
False (R)
* too thick
* moist
inoculum
- subculture
- incubate
- compare with ____ to stdized the inoculum
- 4-5 colonies tsb
- 37c - 3-5hrs
- 0.5 mcfarland
mcfarland - 99.5ml 1% h2so4 (sulfuric acid) + .5ml 1.175% bacl2 (barium chloride)
antibiotic disk
- size
- storage for working supply
- storage for long term
- storage for solutions
- 6mm
- 2-8c -ref
- -20c - non frost
- -70c - dilution mtd
agar plate
- size 150mm stock plates
- size 100mm stock plates
- distance of disk from center
- distance between 2 disk
- incubation
- zoi measurement
- if sxt (sulfonamides) create 2 concentric zones measure at
- 12 plates
- 5 plates
- 24mm
- 15mm
- 35-37c for 16-18hrs
- ruler/caliper
- outer zones
agar used for each fastidious org.
- streptococci
- mycobacterium
- mrsa
- n. gonorrhoeae
- n. meningitidis
- h. influenza
- anaerobes
- mha w/ 5% sheep’s rbc
- middlebrook (clear)
- mha w/ 2% nacl
- gc agar w/ supplements
- 2.5% horse blood
- htm
- brucella agar w/ hemin
automated sys. - detect growth at
- uses rgt cards and chromogenic substrates - absorbance
- thru spectrophotometric/fluorometric
- fluorometric/colorimetric
- vitek
- walk away
- phoenix
tests performed
- inducible clindamycin (2ug) resistance - means strong inducer to erythromycin (15ug)/methylase enzyme is present
- (+) result
- Activates (R) to clindamycin
- strip, single antibiotic w/ diff. conc. aka mic on test
- (+) result
- aka schlicther test - effective on treatment
- screening for entero but confirm w/ CarbaNP test and mCIM test
- (+) result
- d test
- d zoi - (+) is resistant
- erm gene
- e test
- ellipse zoi
- serum bactericidial test
- modified hodge test
- clover leaf zoi
prc steps
- separates dna strands - 94-95c; 30-35secs
- attach primer to dna - 40-45c; 30-1min
- synthesis of new strands - 68-72c; 1-2min
- denaturation
- annealing
- extension
- use taq polymerase
* mgcl - proper function
* tris buffer - proper reaction
ID of org
- semi-auto - uses strips, microtubes w/ biochemical substrates (pure)
- 2 automated, other is more rapid
- api 20e, api 20a (analytical profile index)
- vitek, maldi-tof (matrix assted laser desorption - time of light) - rapid
gaspak jar -anaerobe
- envelope contains -responsible for co2, h2
- anaerobic indicator
- uses wat catalyst - common error - inactivation due to repeated use
- sodium bicarbonate (nacho3), sodium borohydride (nabh4)
- meth. blue, resazurin (pink)
- palladium catalyst
colorless if no o2
boiling thioglycolate - drive off o2 (anaero, aero, facul)
gs (gram -)
- for b. pertussis
- for legionella
- 0.1% carbol fuchsin, 2mins
- 0.2% carbol fuchsin
more susceptible to infections
warm moist skin
most common mtd in treating infectious waste
incineration
- specimen for naat/pcr
- traditional specimen for c. trichomatis
- first morning urine
- urethral swab
naat - screening for c. trichomatis and n. gonorrhea
smooth, clay like
n. elongata
brittle, crumbly, wrinkled
nocardia
shiny half pearls on bap/ mercury droplet like
b. pertusis
butter, cream yellow
s. aureus
fried egg on bap
mycoplasma
greenish metallic sheen
1. emb
2. bap
- e. coli
- p. aeruginosa (serrated confluent growth - cetrimide)
blue pigmentation
kluyvera, proteus
swarming
- c. tenani
- c. septicum
gun metallic black
c. diptherae
identifies hazardous task and promotes employee safety
exposure control plan
wat memorandum that states - diagnosis of tb - 2 samples in 1 day
doh memo. no. 2023-0021
myco. tb. complex
mtbc - unable to produce growth on media, croissant morphology
m. microti
MAC TB
M. tuberculosis,
M. bovis,
M. africanum,
M. microti,
M. caprae.
- resembles m. tb
- from hot water taps/contaminated water
m. xenopi
selective agar- gram (-) anaerobes
kvlb (kanamycin vancomycin laked blood agar)
- m agar w/ arginine - phenol red for
- u agar w/ urea - phenol red for
- mycoplasma
- ureaplasma
only NF produces h2s on kia/tsi
shewanella purefaciens
produces esbl (Extended Spectrum Beta-Lactamase) - (R) to antibiotics
usually bowel org.
- e.coli
- k. pneumoniae
- mistaken as yersinia
- routine stool culture for yersinia
- best media for yersinia
- proteus
- mac
- cin (Cefsulodin-Irgasan-Novobiocin) - selective for yersinia
diagnosis for lyme dse
sero (if or eia)
- detects lipase lecinthinase production
- (+) result
- egg yolk/ mod. mc clung/ neomycin agar
- opaque precipitate/ iridiscent sheen/ pearly layer
after id and ast for m. tb it is held for how many months
6 months
mycobacterium spp
* (+) sub. skin - grow 30c
- m. ulcerans
- m. marinum
- m. haemophilum
differential
Xylose Lysine Deoxycholate agar (xld)
* yellow colonies (fermenter)
* red colonies w/ black centers
* colorless colonies
- e. coli
- salmonella
- shigella
xld - salmonella and shigella
water bacteriology exam
mutiple tube fermentation test (gold std)
1. presumptive test
2. confirmatory test
3. completed test
- lauryl sulfate broth
- brilliant green blue lactose broth
- emb, na
catalase - false (+) if use colony from this media
bap
prosthetic heart valve infection due to slim or biofilm prod. of this org.
s. epidermidis
pyelonephritis and cystitis in indwelling catheters due to wat org
s. saprophyticus
VF in s. aureus
- skin infection
- skin desquamation/scalded skin syndrome/ritters dse/pemphigus neonatorum
- invade tissues
- resistance to penicilin
- marker of vilurence
- fibrinolysis - dissolution of clot
- descreases viscosity - assst. mobility
- beta hemolysis
- prevent phagocytosis
- food poisoning
- tsst 1 (tampons))
- desctruction of wbc
- lipase
- exfoliatin
- hyaluronidase/duran raynal factor
- beta-lactamase
- coagulase
- staphylokinase
- dnase
- beta hemolysin/ sphingomyelinase c/ hot cold lysin
- protein a
- enterotoxins a,b
- tsst 1/pyrogenic exotoxin c
- panton valentine leukocidin -pvl
- (R) to penicilin of s. aureus is due to ________ encoded by
- treatment for s. aureus
- pbp2a (penicilin binding protein 2a), mec a gene
- moc - methicilin, oxacillin, cloxacillin
vancomycin - mrsa
- old sock odor on msa
- butyrous colonies
- yellow color colonies
s. aureus
selective medium for gram (+)
pea agar (white colonies)
- lancet/bullet shaed diplococci
- done shape - umbonate (young)
- flat/nail-head/crater-like/umblicate/coin w/ raised rim/ checker appearance/ doughnut - umbilicated
otitis media
lobar pneumonia (rusty sputum)
s. pneumoniae
meningitis
- newborn - 1month
- 1month - 5 yrs old
- 5 yrs old - 29 yrs old
- > 29 yrs. old - geriatrics
- immunocompromised px
- s. agalactiae
- h. influenzae
- n. meningitidis
- s. pneumoniae
- l. monocytogenes
for the attachment of viridans strep to tooth surfaces
glucans
dextrans
- not lancefield that produces glucans and dxtrans
under this org.
1. causes sub. acute endocartitis
2. dental carries
3. found oral cavity
viridans
- s. mitis
- s. mutans
- s. mitis
lancefield - extraction of c carbohydrate from cell wall