B-Cells Flashcards

1
Q

what are b-cells and their role?

A
  • b-cells are one of specialized cells of the adaptive immune system
  • they produce antibodies for a long range, distant site of infection
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2
Q

what are b-cell receptors (BCRs)?

A
  • b-cell receptors are specialized proteins expressed on the surface of B cells that allow them to recognize and bind to specific antigens
  • BCRs are antibodies stuck to the surface of b-cells
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3
Q

what is the structure of b-cell receptors?

A
  • they have “2 arms” (antigen binding domains) and it looks like a Y, but each arm is the exact same
  • the arms are composed of surface immunoglobulin (mIgM) bound to the membrane of the b-cell
  • it is complexed with Ig⍺ and Igβ chains that contain ITAMS for intracellular signalling
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4
Q

what do b-cell receptors bind to?

A
  • BCRs bind directly to the 3-dimensional (tertiary) structure of an antigen
    –> it can be a protein, carbohydrate, lipid, nucleic acid

they do NOT require MHC = broader diversity in what they bind and how they bind

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5
Q

how are lymphocyte receptors so diverse?

A
  • b-cells and t-cells don’t have receptors when they’re first produced
  • lymphocyte receptors (TCRs and BCRs) are produced by random rearrangement of their DNA
  • this process is celled SOMATIC RECOMBINATION
    –> if changes are made to DNA of cells = change in mRNA and protein produced

only occurs in lymphocytes, most cells DNA don’t change

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6
Q

how does the process of somatic combination lead to diversity?

A
  • lymphocyte receptor rearrangement is a RANDOM process which resulting in every individual generating a large and unique TCR and BCR repertoire
    –> T-cell diversity takes place in thymus
    –> B-cell diversity takes place in bone marrow
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7
Q

what are the components of BCRs?

A
  • BCRs are made up of heavy and light chains composed of variable and constant domains
  • heavy chain genes are found on chromosome 14 and contain multiple V, D, J and C exons
  • light chain genes only contain V, J and C exons (not D)
  • there are 2 types of light chain genes: Kappa (κ) genes and Lambda (ƛ) genes
    –> each rearranged BCR expresses either κ or ƛ (never both)
  • BCR genes are commonly referred to as immunoglobulin (Ig) genes
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8
Q

how does the process of somatic combination work for t-cells and b-cells?

A
  • receptors are encoded by variable (V), diversity (D), joining (J) and constant (C) gene segments
    –> heavy chains of BCRs are encoded by V, D, J, and C segments
    –> light chains are encoded by V, J and C segments
  • there are many possible combinations of V(D) and J
  • V(D) J recombination randomly selects and joins segments from the V, D, J gene pool and connects to a constant (C) region to form a functional BCR
  • lymphocytes do not express functional antigen receptors (BCRs or TCRs) until somatic recombination occurs
  • this process occurs early in lymphocyte development
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9
Q

how does genetic polymorphism affect human immunoglobulin genes?

A
  • the number of functional gene segments in human immunoglobulin genes can vary between individuals due to genetic polymorphism.
  • this variation can influence the diversity of B-cell receptors (BCRs), which contributes to the individual’s immune response capabilities
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10
Q

what are the key steps to b-cell recombination?

A
  • in the bone marrow, hematopoietic stem cells (HSC) produce pro-b cells that are committed to the b-cell lineage
  • the pro-B cells then begin the process of immunoglobulin (Ig) gene recombination to form functional B-cell receptors (BCRs).
  • the heavy and light chain genes are rearranged, creating unique antigen-binding sites on the BCR
  • pnce the pro-B cell successfully produces a BCR, it expresses IgM (the first type of antibody). The cell is now referred to as an immature B cell
  • the b-cell and BCR must pass positive and negative selection before leaving the bone marrow
  • after, immature B cell then leaves the bone marrow and migrates to the spleen or lymph nodes to complete its maturation.
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11
Q

what is the process of B-cell receptor selection?

A

positive and negative selection occurs in the bone marrow

1) positive selection:
- does the BCR bind ligands/antigens? if yes = survive and mature
2) negative selection:
- does the BCR bind self-ligands? if yes = cell tries to fix the receptor through more rearrangement (if can’t fix = delete)
*this process removes self-reactive b-cells

once the BCR has passed both selection processes, it migrates to secondary lymphoid organs for SHM and affinity maturation

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12
Q

what is BCR somatic hypermutation (SHM)?

A

a physiologic process in which B-cell randomly mutates its immunoglobulin regions to produce an antibodies with greater affinity for a pathogen
- these mutations increase the diversity of the antibody pool, enabling the immune system to adapt better to various antigens.
- this process is mediated by enzymes called AID and UNG

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13
Q

what is affinity maturation?

A

a process that improves the quality of the immune response by generating B cells that produce antibodies with higher affinity for the antigen
–> B cells with higher-affinity receptors for the antigen are selected for survival

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14
Q

how does somatic hypermutation lead to affinity maturation?

A

Somatic Hypermutation (SHM) leads to affinity maturation by generating a diverse pool of B cells with varying affinities for a specific antigen

  • during SHM, random point mutations are introduced into the variable regions of immunoglobulin genes at a high frequency
  • as a result, it generates a diverse population of B cells with different mutations
  • these mutations can lead to changes in the antigen-binding site of the B cell receptor (BCR), altering its affinity for the pathogen
    –> B cells with mutations that increase their affinity for an antigen are selected and proliferate
    –> B cells that have mutations leading to a lower affinity for the antigen are eliminated
  • the selected high-affinity B cells undergo clonal expansion, producing more B cells that can bind tightly to the pathogen, thereby improving the overall immune response

This process of selecting and expanding high-affinity B cells is known as affinity maturation.

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15
Q

why are high affinity b-cells important in the immune response?

A

high affinity b-cells produce antibodies that bind more tightly and specifically to antigens
–> the more tightly antibodies bind to an antigen, the more likely they are to target and remove it from the body
–> higher affinity increases the quality of specific antibody effector functions

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16
Q

how does diversity vary between T-cells and B-cells?

A
  • t-cells are more diverse @ start
  • b-cells less diverse @ start but progressively get more diverse
  • b-cells purposely introduce mutations so daughter cells look different, but t-cells have identical daughter cells
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17
Q

where does SHM and affinity maturation take place?

A
  • both SHM and affinity maturation happen in germinal centres of secondary lymphoid tissues, such as the spleen and lymph nodes
  • DARK ZONE
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18
Q

what are germinal centres?

A
  • germinal centres form in the lymph nodes 6 days after primary infection or immunization
  • they are only present if we’re actively forming an immune response
  • germinal centres are the focus of proliferating b-cells and specialized helper t-cells (Tfh)
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19
Q

what are the components of germinal centres?

A

there are 2 areas:
- dark zone = B-cell clonal expansion and somatic hypermutation
- light zone = affinity maturation and selection for highest affinity BCRs

the light zone also has follicular dendritic cells that trap antigens long-term to support B-cell affinity maturation, and to maintain the structure of germinal centres

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20
Q

how do B cells compete in the germinal center, and what determines their survival?

A

within the germinal center, there are not enough antigens for all B cells to survive, so they compete.
- dividing b-cells with point mutations compete for binding to antigens presented by follicular dendritic cells in the light zone.
–> favourable mutations allow the b-cell to bind strongly to the antigen = get signals to remain activated
–> disadvantaged mutations mean the b-cell can’t bind antigen = won’t get any more activating signals = eliminated

This process ensures that only high-affinity B cells survive, contributing to affinity maturation.

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21
Q

why is the secondary immune response faster than primary?

A
  • somatic recombination and affinity maturation contribute to increased sequence diversity, which expands the b-cell receptor repertoire
  • throughout our lifetime, we respond to various pathognes
  • as the immune response develops, antibodies generated have progressively higher affinity for the pathogen due to affinity maturation
  • after the primary immune response, some B cells differentiate into memory B cells, which persist long-term = these memory cells retain the highest-affinity BCRs (antibodies) for the pathogen

therefore, memory cells with high-affinity BCRs enable the secondary immune response to be more efficient and faster than the primary response.

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22
Q

what are the main b-cell types of the adaptive immune system?

A
  • conventional b-cells (B2) = have diverse BCRs which rely on t-cell for activation
  • plasma cells = activated b-cells that produce antibodies (the Ig molecule released has exactly the same specificity of the membrane-bound BCR)
  • unconventional b-cells (B1) = less diverse BCRs which are less dependent on t-cell for activation
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23
Q

how are b-cells activated?

A
  • they require 3 signals
  • most of the time receive them from helper t-cells
  • sometimes get signals from the innate immune response

*multiple signals are required for control because you don’t want accidental response, particularly because b-cell response is potent

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24
Q

how is b-cell activation similar to t-cell activation?

A
  • they both require 3 signals
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25
Q

what are 2 pathways of b-cell activation?

A

1) t-cell dependent B-cell activation (more common)
2) t-cell independent activation of b-cells (less common)

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26
Q

what are the steps to t-cell dependent B-cell activation

A

1) the b-cell receptor (BCR) binds directly to its matching, specific antigen
2) CD40 on b-cells binds co-stimulatory molecule on helper t-cell (CD40L)
- there is also MHC class II binding to t-cell for recognition*
3) helper cell releases cytokines to enable b-cell differentiation, proliferation and survival of the b-cell

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27
Q

what are the steps to t-cell independent activation of b-cells

A

this pathway primarily occurs with multivalent antigens, which are antigens that carry alot of antigens in one spot

  • multiple BCRs bind the same pathogen to create receptor clustering, which strengthens BCR signalling
  • PRRs bind to the antigen, triggering additional signalling pathways inside the b-cell
  • the combined 2 signals lead to activation and proliferation of the b-cell
28
Q

how do antigens get to the b-cell?

A
  • b-cells typically hang out in secondary lymphoid organs, such as lymph nodes where they can interact with antigens
  • antigens enter lymph nodes via afferent lymphatic vessels (along with cytokines and chemokines) from site of infection
  • B cells in the lymph nodes can recognize antigens through their BCRs, either when (1) soluble in the lymph or (2) bound to local macrophages or follicular dendritic cells.

*if lymph drainage is impaired, this process of antigen presentation and B cell activation may not occur effectively.

29
Q

why does location matter for b-cell activation?

A

the structure of the lymph node is crucial for ensuring that b-cells and TFH cells meet and interact
- in the lymph node, a b-cell will move to the border between t-cell and b-cell zones to search for the matching TFH cell (helper t-cell)
–> proper migration and zone-specific interactions are essential for successful activation

30
Q

how do soluble antigens find b-cells for activation?

A

1) soluble antigens (pathogens) that have been opsonized via complement enter the lymph node via afferent lymphatics
2) the soluble antigen binds to complement receptors on subcapsular sinus macrophages (SCSM) which deliver the antigen further into the node
3) the antigen is recognized my immune follicular dendritic cells and coats the DC
4) naive b-cells can either sample the FDCs or find a soluble antigen to match their BCR

31
Q

what is the entire process of t-cell dependent b-cell activation?

A

1) activation of CD4+ helper cell
- a free antigen enters the lymph node directly or is presented by APCs on MHC class II
- naive CD4+ T cells in the T-cell zone sample the antigens presented by APCs and if the CD4+ T cell’s TCR matches the antigen-MHC complex, the T cell becomes activated and differentiates into TFH cells
2) activation of b-cell
- at the same time, a naive B cell with a BCR encounters their matching antigen (either directly or presented by follicular dendritic cells) and becomes partially activated (SIGNAL 1)
- the B cell processes the antigen and presents it on MHC class II molecules.
- activated TFH cells migrate and b-cell meet at the border zone of the lymph node to interact and meet
- the TFH cell’s TCR binds the antigen presented on the MHC class II of the b-cell, forming a synapse (CD4+ requires MHC class II to bind)
- the TFH cell produces CD40L, which binds to CD40 on the b-cell (SIGNAL 2)
- the TFH cell releases cytokines to promote b-cell activation, proliferation and differentiation into plasma cells (SIGNAL 3)

32
Q

what happens after a b-cell is activated?

A

A b-cell that receives help from a t-cell can do one of two things:
1) it can differentiate into a plasma cell immediately, leave the node and make a low affinity IgM antibody
2) it can join other activated b-cells to form a germinal centre in the node (where it undergoes affinity maturation and class switching)

–> affinity maturation = made better
–> class switching = become a different type of antibody

33
Q

what processes occur within the germinal centres in lymph nodes?

A

in the dark zone:
- activated b-cells undergo somatic hypermutation (SHM) via point mutations to produce variations in the V domain of their BCR

in the light zone:
- b-cells undergo affinity maturation which is when b-cells compete for binding to follicular dendritic cells (FDCs), so high affinity BCRs survive while lower affinity b-cells are eliminated
- class switching also occurs, which is when b-cells can switch the class of anitbody they belong to in order to better suit the immune response

34
Q

what is class switching?

A

class switching is a genetic process that allows mature b-cells to change the type of antibodies they produce

35
Q

Why do B cells undergo class switching?

A
  • the first plasma cells activated with make IgM antibodies
  • however, here are several types of antibodies, including IgM, IgG, IgA, IgD, and IgE
  • different antibody classes mediate different immune functions, such as neutralizing pathogens, activating complement, or enhancing phagocytosis.
  • depending on the infection type or immune need, B cells can switch the class of antibody they produce (e.g., from IgM to IgG or IgA), enabling a more specialized and effective immune response.
36
Q

what is the process of class switching in b-cells?

A
  • class switching involves genomic deletions at the switch (S) regions of the antibody genes
  • the enzyme AID plays a central role in class switching among b-cells by causing changes to the DNA of the b-cell
  • AID deaminates (removes) cytidine and replace it with uridine in the switch (S) regions in the genome on both strands
  • as a result, the uridines are converted into double stranded breaks in the DNA, which allows for the rearrangement of DNA = creates a new constant domain.
  • this produces a different class BCR and secreted antibody
  • the DNA segment that was removed in the process (between the switch regions) is excised and discarded.
37
Q

what is the process of migration for b-cells?

A
  • after b-cells undergo processes like affinity maturation and class switching, B cells with high-affinity BCRs are selected to differentiate into plasma cells
  • these plasma cells are capable of producing and secreting antibodies
  • once differentiated, the plasma cells leave the lymph node and migrate to various sites in the body (bone marrow, mucosal tissues)
  • the antibodies produced by plasma cells enter the bloodstream or lumen of mucosal surfaces to fight pathogens
38
Q

what are memory b-cells?

A
  • activated b-cells can either become plasma cells (produce antibodies) or a memory cell
  • memory B-cells are created when a B cell responds to an antigen, and then remain in the body after the infection is gone.
  • when the body encounters the same antigen again, memory B cells trigger a faster and stronger immune response.
39
Q

memory b-cells versus naive b-cells

A

memory b-cells react faster to infection than naive b-cells
–> it takes 3-5 days for a memory cell to respond versus 7-10 days for a naive b-cell
–> memory b-cells have much higher antibody affinity for antigens
–> the antibody response of a memory cell is 10 to 1000x faster than primary response (STRONGER)

40
Q

what are the 3 types of memory cells?

A

1) early subset of memory b-cells
2) later subset of memory b-cells
3) long lived plasma cells

41
Q

what are early subset of memory b-cells?

A
  • b-cells that first activated during an infection
  • they produce IgM b-cell receptors (BCRs) with low affinity for a pathogen
42
Q

what are later subset of memory b-cells?

A
  • b-cells that produced after somatic hypermutation and class switching
  • The BCRs are not IgM (the first antibody produced during a primary response) and could be antibodies of other classes like IgG, IgA, or IgE
  • the V domains of the BCRs in these memory cells have a higher affinity for the pathogen
  • these memory cells can remain in or near the germinal center or migrate to sites of antigen drainage where they are likely to encounter pathogens again
43
Q

what are long lived plasma cells?

A
  • long-lived plasma cells (LLPCs) are differentiated plasma cells, not memory B cells
  • These cells typically reside in the bone marrow but can also be found near barriers, such as in gut, lung, and mucosal tissues
  • LLPCs continue to produce antibodies for long periods of time even without re-exposure to the antigen = help provide long-lasting immunity after an initial infection or vaccination
44
Q

what is the summary of key events in t-cell responses?

A

1) early hours
- APC (Antigen-Presenting Cell) activation begins.
2) minutes to 24 hours
- antigens enter the lymph node.
3) 1 to 24 Hours
- T-cell/APC interactions occur.
4) 1 to 4 Days:
- T-cells proliferate and differentiate, with the movement of T-helper (TFH) cells into the follicle area
5) 3 to 4 days:
- effector cells (both T and B) egress from the lymph node and enter the efferent lymphatics.

45
Q

what is the summary of key events in b-cell responses?

A

1) Minutes:
- soluble antigens enter the lymph node
2) minutes to 6 Hours:
- B-cells interact with antigens.
3) ~6 hours:
- B-cells migrate to the T-cell zone.
4) 1 to 2 Days
- B-cells proliferate and migrate to the outer follicular zone.
5) 2 to 4 Days or More
- the germinal center begins to form for further B-cell differentiation.
6) 3 to 4 days:
- effector cells (both T and B) egress from the lymph node and enter the efferent lymphatics.

46
Q

what are antibodies?

A
  • antibodies are effector molecules in the immune system
  • they are released by activated b-cells, called plasma cells
  • the antibodies secreted by the plasma cell have identical specificity to the the BCRs found on the membrane of the original b-cell
  • they form an essential link between the innate and adaptive immune system
47
Q

what is the structure of antibodies?

A
  • composed of 2 identical light chains and 2 identical heavy chains
  • 2 identical antigen-binding domains (Fab regions) located at the tips of the antibody’s “arms” and consist of the Variable Heavy (VH) and Variable Light (VL) regions
    –> responsible for binding antigens
  • they have one Fc domain, located at the base of the antibody, where the two heavy chains interact
    –> responsible for binding receptors on immune cells
48
Q

what are the different classes of antibodies?

A

antibody classes are determined by the C (constant) domains
- IgG
- IgD
- IgE
- IgA
- IgM

49
Q

how do different antibody classes activate specific effector responses in the immune system?

A
  • antibody classes are distributed differently throughout the body
  • antibodies bind to a pathogen before it engages in effector responses
  • different antibody classes activate specific effector responses based on the interaction between the Fc region of the antibody and Fc receptors (FcRs) on immune cells
  • the Fc receptors present on immune effector cells (phagocytes, NK cells, and mast cells) recognize and bind to specific antibody classes
  • once bound, the immune effector cell is activated to initiate an immune response
50
Q

what is IgA transcytosis?

A

the process by which dimeric IgA antibodies are transported across epithelial barriers (gut, lungs, and mucosal surfaces) to be secreted into the lumen where they help protect against pathogens.

51
Q

what are the steps associated with IgA transcytosis?

A
  • plasma cells in tissue produce IgA
  • the dimeric IgA binds to the polyIgR receptor located on the basal side (the side facing the underlying tissue) of the epithelial cells
  • after binding, the polyIgR-IgA complex is endocytosed (engulfed) by the epithelial cell
  • the IgA is then transported through the epithelial cell via vesicles
  • The vesicle containing the IgA fuses with the apical surface (the side facing the lumen) of the epithelial cell, where it is released into the lumen of the gut, lung, or other mucosal tissues
  • once in the lumen, IgA accumulates in bodily secretions (saliva, tears) to precent mucosal surfaces from infection
52
Q

what is an epitope?

A

a specific spot on a pathogen that is recognized by an antibody (or BCR or TCR)
–> a single antigen will have multiple epitopes

53
Q

what is a polyclonal antibody response?

A

occurs when the body produces a variety of antibody classes (different lineages) to fight against a particular antigen

54
Q

how do pathogens activate a polyclonal antibody response?

A
  • an antigen/pathogen has multiple epitopes on its surface
  • because an antigen has multiple distinct epitopes, different B-cells will be activated during an infection, with each B-cell recognizing and responding to a specific epitope.
  • as a result, multiple different antibodies will be produced, each specific to its corresponding epitope
  • polyclonal antibody response helps the immune system recognize and neutralize various parts of the pathogen

*this diversity helps provide broad protection against the same pathogen

55
Q

what are the 6 antibody effector mechanisms?

A

1) Antibody neutralization of pathogens and toxins
2) Antibody mediated agglutination of pathogens
3) Antibody-mediated opsonization and phagocytosis
4) Antibody activated classical pathway of complement
5) Antibody dependent cellular cytotoxicity (ADCC)
6) Antibody-mediated granulocyte activation

56
Q

what is the process of antibody neutralization of a pathogen?

A

there are multiple options:
1) neutralization of pathogens
- viruses and some bacteria need ot bind a cell or tissue in order to enter it
- so antibodies can bind to the pathogen and block its ability to bind the surface receptor on the host cell needed for entry

2) immobilization or paralysis of pathogens
- some antibodies can impair the movement of pathogens, making them less capable of causing infection

3) destabilization of pathogens
- some antibodies can destabilize (disrupt the structure and integrity) the pathogen, rendering it non-infectious

57
Q

what is the process of antibody neutralization of a toxin?

A
  • dendritic cells can recognize and capture toxins, processing them to activate the immune system.
  • these dendritic cells then present the processed toxins to B cells, triggering a B cell response.
  • once activated, the B cells differentiate into plasma cells, which secrete neutralizing antibodies.
  • these antibodies specifically bind to the toxins, blocking their ability to bind to or enter host cells, thereby preventing the toxins from causing damage.
58
Q

what is the process of antibody agglutination?

A

agglutination involves antibodies binding to multiple pathogens/antigens at one time, forming clusters or “clumps”
- as a result, pathogens can no longer infect cells or tissues because they’re all stuck together and cannot move (reduced mobility)
- clumped pathogens are more easily recognized/visible and cleared by the immune system

59
Q

what is antibody-mediated phagocytosis?

A

antibody-mediated phagocytosis refers to the process by which antibodies enhance the ability of phagocytes (macrophages, neutrophils) to engulf and destroy pathogens

60
Q

what is the process of antibody-mediated phagocytosis?

A
  • IgG antibodies are the most common in serum/blood stream
  • IgG antibodies act as opsonins, which “tag” the pathogen to make it easier for phagocytes to recognize it
  • phagocytes express specific receptors called FcRs for IgG (and also IgA).
  • when an antibody binds to a pathogen using its Fab region, it causes a conformational change in the Fc domain of the antibody
  • This change allows the Fc portion of the antibody to bind to the FcRs on the surface of the phagocyte
  • the binding of the antibody to the phagocyte’s FcRs facilitates the process of phagocytosis, so the phagocyte engulfs and digests the pathogen.
61
Q

what is complement fixation?

A

complement fixation refers to the activation of the complement system when antibodies bind to a pathogen
- some antibody classes can activate the classical complement cascade when they are bound to a pathogen = trigger immune response

62
Q

what is the process of complement fixation?

A

complement fixation is when antibodies trigger the classical pathway of the complement system
- when antibodies bind to a pathogen, they undergo a conformational change that exposes the Fc portion of the antibody = can bind to the C1 complex
- Once the C1 complex is activated, it initiates the complement cascade = C3 convertase and C5 convertase = C3a, C5a, C3b, C5b
- this eventually leads to various immune responses such as opsonization, inflammation, and pathogen lysis.

63
Q

what is the process of antibody-dependent cell-mediate cytotoxicity

A

1) NK cells have a special receptor (FCR) that can bind to IgG antibodies (FcɣRIII –> CD16)
2) virus-infected cells display viral proteins on their surface.
3) antibodies can bind to these viral proteins, “coating” the infected cell
4) multiple of the NK cell’s FCR (FcɣRIII) bind to the Fc region of the antibody on the surface of the infected cell
5) this cross-linking triggers signals inside the NK cell to activate it
6) the NK cell forms a synapse with the target cell and releases perforin (to poke holes in the cell) and granzymes (to trigger cell death).

64
Q

what is the process of antibody-mediated granulocyte activation?

A
  • Intestinal helminths (parasitic worms) are pathogens that trigger a strong Th2 immune response
  • this leads to the activation of IgE-secreting plasma cells
  • mast cells and basophils express a receptor called Fc⍺R1, which binds to IgE antibodies with very high affinity.
  • therefore, when IgE enters the bloodstream, it binds to mast cells (in tissues) and basophils (in the blood).
  • cross-linking occurs when IgE bound to mast cells or basophils interacts with many antigens on the surface of the helminth, leading to several immune responses:
    1) degranulation = release of pro-inflammatory granule contents
    2) synthesis and release of lipid mediators of inflammation
    3) synthesis and release of cytokines

different from how the body takes care of virus and bacteria

65
Q

what is type 2 immunity?

A
  • a type of immune response that primarily helps defend the body against extracellular parasites like worms and certain types of allergic reactions
  • it is characterized by the activation of IgE antibodies, mast cells, basophils, and eosinophils