Antimicrobial Chemotherapy Flashcards
Antibiotics: not just for humans
• ~3/4 of global antibiotic use is in livestock
• Use on plants is common but accounts for less amounts
• Purpose: prevention and treatment of disease, growth promotion
Penicillin, the 1st antibiotic
1928 Sir Alexander Fleming
Penicillium notatum “mold”
1939-40 Isolation of Penicillin
Sir Howard Florey & Ernst Chain
Isolation of Penicillin
Sir Howard Florey & Ernst Chain
First use of penicillin
World War II ~1942-1945
Coconut Grove Fire, Boston 1942
492 people died First use of penicillin
Streptomycin
• Selman Waksmam (1943-44)
• produced by the soil bacterium Streptomyces griseus
• 1st antibiotic discovered through a systematic screen
• Screen of 10,000 strains of soil bacteria and fungi for antibacterial activity
Antimicrobials: why natural products?
Antibiotic have been made by bacteria for over 40 millions years
Antibiotic-producing micro-organisms: soil organisms such as Actinomyces (fungi) and Streptomyces (mold)
• Most antibiotic classes originated from natural compounds
-Streptomycin (aminoglycosides)
-Tetracyclines
-Daptomycin (lipopeptides)
Bactericidal vs static activity
Not an absolute distinction as the killing effects vary with the methods used, doses and bacteria species
AST
Antibiotic susceptibility testing
-key diagnostic test in clinical microbiology lab to determine antibiotic susceptibility and identify resistance in bacterial pathogens causing infections
-Also used in the lab (e.g. to determine antibiotic selection)
-Can be qualitative or quantitative depending on the method
-Specific MIC values (thresholds) are used to determine Resistance vs Susceptibility for each bacterial specie x drug combination
Cons of AST
• Requires culture from pure bacterial colonies - cannot be done directly on clinical samples
• is labour intensive and slow (up to 72h from beginning of sample processing)
Common test of AST
Etest diffusion test
Kirby Bauer disc diffusion test
Dilution susceptibility test
MIC
Minimal Inhibitory Concentration
• MIC: minimal concentration of a drug that inhibits growth of a particular organism.
• High MIC = Resistant.
• Multiple different methods: most measure the zone of growth inhibition, or the dilution of drug that inhibits visible growth
MIC are widely used measures of antibiotic susceptibility in clinical microbiology labs and define whether a bacteria/fungus strain is resistant or not to a particular agent
mechanism of action
• target [cell-wall, ribosome, etc.]
• spectrum of activity [gram positive / gram negative] (some only target one of these)
• bacteriostatic vs. bactericidal
• resistance (next class)
chemical structure
• synthetic / semi-synthetic / natural product
• delivery [oral vs. injected vs. topical]
• side effects
Antibiotics targets
DNA replication: Quinolones
Cell wall synthesis: Beta-lactam
Protein synthesis: Aminoglycosides and Macrolides
Beta lactams
• Cell wall synthesis inhibitor
• Bactericidal antibiotic
• Common beta-lactam ring
• Several different classes with different spectrum of activity
• Beta-lactams mimic the 3D structure of the dipeptide D-Ala-D-Ala component of peptidoglycans, compete binding with penicillin binding protein
• Generally well tolerated with limited side effects
Ex. Penicillins, Cephalosporins, Monobactam, Carbapenem
Many of the cell wall inhibitors are not active against gram-negatives
because they can’t penetrate the outer membrane
Prokaryotic protein synthesis
Prokaryotes: 70S ribosomes
• 30S small subunit
• 50S large subunit
Eukaryotes 80S ribosomes
• 40S small subunit
• 60S large subunit
Antibiotics are mostly selective for prokaryotes, and thus display “limited” side-effects when used as drugs
Major protein synthesis inhibitors
30S inhibitors: Tetracyclines, Aminoglycosides
50S inhibitors: Macrolides
Aminoglycosides
• Bind to 30S ribosomal subunit
• Bactericidal activity
• Several downstream mechanism of action
-Inhibitors protein translocation
-Induce mistranslation leading to loss of cell-wall integrity
• Broad spectrum against gram negative and gram positives but inactive against obligate anaerobes (because need a cell wall transporter that lack in obligate anarobes)
• Somewhat toxic to human, limit clinical use due to side effects
• Can only give by injection
How to choose antibiotics
• Spectrum: narrow vs broad
• Mode of delivery: oral, injectable or intravenous
• Dosing: pharmacokinetics and pharmacodynamics
• Antibiotic resistance
• Clinical indication: disease vs microbiology-driven choice
• Clinical efficacy: clinical studies, microbiological potency, pharmacokinetic
• Side effects and toxicity
• Cost and availability
Antibiotics good or bad
Profound disturbances to the microbiota
Short-term effects:
• fungal/yeast overgrowth
• Clostridium difficile infection (colitis)
Mid-term effects:
• Antibiotic resistance
Long-term effects: ???
Antibiotics crisis
Globally
Now
• >1.3M yearly deaths directly attributable to antibiotic resistance
By 2050
• health cost >10M deaths annually
• global economic cost $100 trillion
Canada
• ~1 in 4 infections are already resistant to first line antibiotics
A post-antibiotic era
an end to modern medicine as we know it.
Origin of antibiotics
Part of evolution
Human behavior and environment accelerates the emergence, selection and spread of antibiotic resistance