Animal Phys Final Flashcards
Cells store energy in what two main forms?
Reducing energy
High energy covalent bonds
Describe carbs
- Have many hydroxyl (-OH) groups
- Glucose is most common carb form
- Used for energy metabolism
- Used as a substrate in biosynthesis to form new or more complex carbs
Describe monosaccharides
- Used for energy and as biosynthesis substrate
- Monosaccharides, also called simple sugars, are the simplest forms of sugar and the most basic units from which all carbohydrates are built. Simply, this is the structural unit of carbohydrates. They are usually colorless, water-soluble, and crystalline shaped organic solids
Describe Complex Carbs
- Polysaccharides that are used for energy storage (i.e insulin, starch) and formation of structural molecules (chitin, cellulose)
Note: Amylose + amylopectin = starch
Glycogen synthesis = ______
Glycogen degradation = ______
glycogenesis
glycogenolysis
Describe the process of glycogenisis
- Glycogen synthase is inactive
- Protein phosphatase activates the complex
- Glycogen (n glucose) interacts with the active glycogen synthase and is converted to glycogen (n+1 glucose)
- Upon conversion protein kinase inactivates glycogen synthase and returns it back to it’s inactive state
Describe the process of glycogenolysis
- Glycogen phosphorylase is inactive
- Glycogen phosphorylase kinase activates the glycogen phosphorylase
- Glycogen (n+1 glucose) interacts with the active glycogen phosphorylase and is converted to back to glycogen (n glucose)
- Upon conversion Glycogen phosphorylase phosphatase inactivates the glycogen phosphorylase and returns it to back to its inactive state
Describe the process of ANAEROBIC glucose metabolism / breakdown
- Overall Rxn: Glucose + 2 ADP + 2 NAD+ → 2ATP + 2 pyruvate + 2 NADH + 2 H-
- Happens in cytoplasm
- Produces intermediates for synthesis of various molecules (Carbs, nucleic acid, amino acids or fatty acids)
- End product, pyruvate, can be used in further catabolic processes
Describe AEROBIC pyruvate oxidation
- Converts carbs (glucose) to pyruvate within cytoplasm
- Pyruvate is carried into the mitochondria
- Pyruvate Dehydrogenase (PDH) oxidises pyruvate to form acetyl-CoA + NADH
Note: Lactate and amine can also be turned into pyruvate
Describe AEROBIC oxidation of NADH
- Glycolysis can only continue if NADH is oxidised to NAD+ and H+
- Two “redox shuttles” carry reducing equivalents (H+ atoms) from cytoplasm ←→ mitochondria:
α - glycerophosphate shuttle
Malate-aspartate shuttle
Oxidation of NADH in the Absence of O2
- NADH is oxidised in the cytoplasm
- Buildup of NADH in cyto means drop in NAD+
- This would inhibit glycolysis (since NAD+ is an important substrate) - Pyruvate + NADH + H+ ←→ lactate + NAD+
- Catalysed by the enzyme lactate dehydrogenase (LDH)
Note: Other anaerobic pathways form less toxic end products and more ATP than lactase (2 ATP)
For example, succinate (4 ATP) and propionate (6 ATP)
Describe lipids
- Lipids are used for energy metabolism, cell structures (e.g membranes), and signalling
Describe fatty acids
- Saturated = No double bonds between carbons
- Unsaturated = One or more double bonds between some carbons
- Fatty acids are a more dense form of energy storage than carbs
Describe the process of fatty acid oxidation
- β-oxidation
- Takes place in mitochondria
- Consumes an ATP to make 1 NADH, 1 FADH and 1 Acetyl-CoA
- Acetyl-CoA is then oxidised in next step
What is the degradation process of glucose to ATP?
- Glycolysis:
* Anaerobically happens in cytoplasm, one glucose is broken down into two pyruvates
* Glucose + 2 ADP + 2 NAD+ → 2ATP + 2 pyruvate + 2 NADH + 2 H- - Pyruvate oxidation:
* Pyruvate is carried into the mitochondria
* Pyruvate is oxidised by Pyruvate Dehydrogenase (PDH) to form acetyl-CoA + NADH
* Can be done aerobically or anaerobically - Acetyl CoA is either converted to ketones or sent to the Kreb’s cycle
- In the tricarboxylic acid cycle (TCA aka Krebs) acetyl-CoA is converted to CO2, NADH (x3), FADH2 (x1), GTP (x1)
- These reducing agents are oxidised at the ETC to release energy which creates the gradient that drives ATP synthesis/phosphorylation
Describe ketones
- Some tissues cannot metabolise fatty acids , but they can metabolise ketones. So ketones are pretty much a form of acetyl-CoA that can be stored, or used by any type of tissue.
- Ketogenesis:
1. Fatty acids converted to acetyl-CoA
2. Acetyl-CoA converted to ketones
3. Ketone bodies can move through circulation - Ketolysis
1. Ketones are broken down to acetyl-CoA Which can then participate in oxidative phosphorylation
Note:
Describe the ETC
- Has five multisubunit protein complexes embedded within the inner membrane between the intermembrane and the matrix. -
- There’s also two electron carries (ubiquinone and cytochrome c)
- Complex I reduces NADH to pump H+ ion from the matrix into the intermembrane space or to complex II
- Complex II turns FAD → FADH, and then cyclically reducing FADH back into FAD and omitting an electron to complex III
- Complex III hands the electron over to cytochrome c which then delivers the electron over to complex IV
- Complex IV oxidises cytochrome c and is itself reduced by cytochrome c. Complex IV uses O2 and adds it to H to get a water molecule byproduct and pumps an electron into the intermembrane space
- Electron buildup in intermembrane space creates gradient that drives protons through ATP synthase, phosphorylating ADP–>ATP
- Generates a proton gradient, heat, water and reactive oxygen species as final products
Describe phosphocreatine
- Is used for muscle energy, found within the myofibril
- Phosphocreatine pretty much just acts as a transporter of phosphate from the main ATP supply chain (the mito) to the sister branch producer (the muscle)
- Reaction is reversible so relative rate of ATP versus phosphocreatine production depends on ratio of concentration of substrates/products
-Phosphocreatine can also move throughout cell (like ATP) - Thus, it can enhance flux of high energy phosphate molecules from site of synthesis (e.g. mitochondria) to site of hydrolysis (e.g. muscle sarcomeres)
What is 31P-NMR Spectroscopy
- Measures ATP turnover
- Detects change in NMR spectra as Pi groups shift between ATP and inorganic phosphate
Pros:
* Accounts for aerobic, anaerobic metabolism, etc.
* Accurate over extremely short time scales. E.g. A single muscle contraction
Cons:
* Logistically difficult
* Subject must be restrained, possibly anaesthetised
* Equipment not portable, and complicated
Describe direct calorimetry
- Measurement of heat of chemical/physiological processes (unit can be ‘calorie’)
Pros:
* Quite accurate under many conditions
* Accounts for aerobic and anaerobic energy production
Cons:
* Subject must be restrained
* Equipment heavy and complicated
* Makes assumptions about anabolic versus catabolic activity
What is Hess Law?
Any anatomical fuel source will always exhibit the same total amount of energy released (as heat) regardless of what intermediate states occur during their breakdown
In scaling relationships what are two things that are factors of volume , and two that are factors of surface area?
Some things are a factor of volume (internal size of animal):
- Total metabolic rate
- Total heat production (cellular respiration byproduct)
Some things are a factor of surface area:
- Respiration (how many cells require air)
- Absorption/expulsion (for animals who do so via skin membranes, like heat loss through skin or water absorption)
Note: Ratio between surface area and volume is 2:3. So, BMR can be predicted to scale with an exponent of 0.667
- Kleiber was the one to find significance and to quantitate the relationships
If resting animal cells (regardless of animal size) had a similar metabolic rate (i.e heat production), larger animal would have relatively ____ surface area for dissipating extra heat
Why?
less
As animals grow in size their inside (volume) gets “more bigger” than their outside (surface area).
Define thermal inertia
The tendency of a material (animal) to resist thermal change.
In our case an animal with a high metabolic rate in relation to it’s size would have low thermal inertia, like a mouse. So it’s losing heat relatively faster than it’s larger counterpart, a rat for example.