ALL BIOCHEM IN FIRST AID Flashcards
ADA DEFICIENCY
ADA—require for degradation of adenosine and deoxyadenosine
Increased levels of dATP—> leads to lymphotoxicity
One of the major causes of AR SCID
LESCH-NYHAN SYNDROME
Defective purine salvage due to absent HGPRT
(Converts hypoxanthine to IMP and guanine to GMP)
Results:
Excess Uric acid production
X—linked Recessive
Findings: intellectual disability, SELF-MUTILATION, aggression, hyperuricemia (orange “sand” in diaper), gout, dystonia
TX:
Allopurinol
Febuxostat (2nd line)
XERODERMA PIGMENTOSUM
Defective nucleotide excision repair —> inability to repair DNA pyrimidine dimers caused by UV exposure Findings: Dry skin Extreme light sensitivity Skin cancer
I-CELL DISEASE (INCLUSION CELL DISEASE)
Inherited lysosomal storage disorder
Defect in—> N-acetylglucosaminyl-1-phosphotransferase
Failure of the Golgi to phosphorylate mannose residues (DECREASE mannose-6-phosphate)
Proteins are secreted extracellularly rather than sent to lysosomes
Findings: Coarse facial features Gingival hyperplasia Clouded corneas Restricted joint movements Claw hand deformities Kyphoscoliosis High plasma levels of lysosomal enzymes FATAL IN CHILDHOOD
ZELLWEGER SYNDROME
AR Mutated PEX genes—leads to peroxisome biogenesis disorder Findings: Hypotonia Seizures Hepatomegaly Early death
REFSUM DISEASE
AR of alpha-oxidation Findings: Scaly skin Ataxia Cataracts/night blindness Shortening of 4th toe Epiphyseal dysplasia TX: Diet, plasmapheresis
ADRENOLEUKODYSTROPHY
X-linked Recessive disorder of BETA-oxidation
VLCFA buildup in adrenal glands, white matter of brain, testes
KARTAGENER SYNDROME
Immobile cilia due to a dynein arm defect AR Results: Decrease in male/female fertility due to immotile sperm and dysfunctional Fallopian tube cilia Increased risk of ectopic pregnancy Can cause: Bronchiectasis Recurrent sinusitis Chronic ear infections Conductive hearing loss Situs inversus (dextrocardia on CXR)
OSTEOGENESIS IMPERFECTA “Brittle Bone Disease”
Type 1 = Mild
Type 2 = severe and usually lethal in peri-natal period (die due to respiratory failure (pulmonary hypoplasia) or intra-cerebral hemorrhage)
Type 3 = considered progressive and deforming
Type 4 = deforming but with NORMAL sclera
Genetic bone disorder: variety of gene defects in COL1A1 or COL1A2–MC form is AD with decreased production in TYPE 1 collagen
Impaired osteioid production by osteoblasts
Genetic mutation causing alpha peptides deficient in glycine
Problems forming triple helix due to defect in glycosylation
Findings:
Multiple fractures with minimal trauma (may occur during the birth process)
Blue sclera due to translucent CT over choroidal veins
Opalescent teeth that wear easily due to lack of dentin
Hearing loss
TX:
Bisphosphonates to decrease fracture risk
EHLERS-DANLOS SYNDROME:
Classical Type:
Type V collagen mutation—joint and skin sx.
Vascular Type:
Deficient type III pro-collagen (problems with cleavage)
Fragile tissues including vessels, muscles, and organs
Faulty collagen synthesis causing: Hyperextensible skin Hyper mobile joints Tendency to bleed (easy bruising) Can be AD or AR Associated with: Joint dislocation Berry and aortic aneurysms Organ rupture *Hypermobility is the MC type*
MENKES DISEASE
X-linked R Cause: Impaired copper absorption and transport due to defective Menke’s protein ATP7A Leads to—> decreased activity of lysyl oxidase—> defective collagen Results: “Brittle, kinky” hair Growth retardation Hypotonia
MARFAN SYNDROME
AD disorder affecting skeleton, heart and eyes
FBN1 gene mutation on chromosome 15–defective fibrillin
Findings: Tall with long extremities Pectus carinatum or pectus excavatum Hyper mobile joints Long, tapering fingers and toes Cystic medial necrosis of aorta*** aortic incompetence, dissecting aortic aneurysms Floppy mitral valve Subluxation of lenses** typically upward/temporally
PCR
Used to amplify a desired fragment of DNA
Useful as a diagnostic tool
(1) Denaturation (heat)
(2) Annealing (cool + DNA primers)
(3) Elongation (heat)
—looking for a specific sequence for illness or mutation
Southern Blot
DNA sample is cleaved
Put onto a gel then transferred to a filter
Filter is exposed to radiolabeled DNA probe
Resulting DS, labeled DNA is visualized when filter is exposed to film
**Unknown sample
**Used for forensics
Northern Blot
RNA sample is electrophoresis
Useful for studying mRNA levels, which are reflective of gene expression
Detects RNA using a DNA probe
Western Blot
Sample protein is separated via gel electrophoresis and transferred to a membrane
Labeled antibody is used to bind to relevant protein** HIV test screening test
Southwestern Blot
Identifies DNA-binding proteins using labeled oligonucleotide probes
Flow Cytometry
To assess size, granularity, and protein expression (immunophenotype) of individual cells in a sample
FOR: workup of hematologic abnormalities and immunodeficiencies
Cells tagged with antibodies specific to surface or intracellular proteins
Antibodies then tagged with a unique fluorescent dye
Microarrays
Used to look @ entire genome
DNA or RNA probes are hybridized to the chip and a scanner detects the relative amounts of complementary binding
Able to detect SNP’s and CNV’s for a variety of applications: Genotyping Clinical genetic testing Forensic analysis Cancer mutations Genetic linkage analysis
ELISA
Immunologic test used to detect the presence of either a specific antigen or antibody in a patient’s blood sample
Initial test for HIV: confirmed with Western Blot
Direct ELISA—> tests for the antigen directly
Indirect ELISA—> tests for the antibody (thus indirectly testing for the antigen)
Karyotyping
Used to diagnose chromosomal imbalances
Can be performed on: sample of blood, bone marrow, amniotic fluid or placental tissue
Metaphase chromosomes are used
FISH
Fluorescent DNA or RNA probe binds to specific gene site of interest on chromosomes
Used for: specific localization of genes and direct visualization of chromosomal anomalies at the molecular level
MCCUNE-ALBRIGHT SYNDROME
Mutation affecting G-protein signaling
Presents with:
Unilateral cafe-au-lait spots with ragged edges
Polyostotic fibrous dysplasia (bone replaced by collagen and fibroblasts)
Precocious puberty
Lethal if mutation occurs BEFORE fertilization but survivable in patients with mosaicism
PRADER-WILLI SYNDROME
Paternal allele is deleted/mutated Maternally derived genes are silenced (imprinted) **Mutation or deletion of chromosome 15 of PATERNAL origin Results: Hyperphagia (excessive eating) Obesity Intellectual disability Hypogonadism Hypotonia