After Midterm Flashcards
Carbohydrates include dietary fibre. True or False?
True.
What is the dietary goal for carbohydrates?
Dietary goal is to increase the intake of non-digestible CHO.
What is the Health Canada recommended CHO intake (%)?
45-65%
What are the two essential fatty acids?
α-linolenic (ω-3) and linoleic (ω-6)
What are the functions of lipids?
2
precursors for signalling molecules,
structural role in
membranes, etc.
What are the dietary goals for lipids?
2
Goal:
- lower the intake of total fat (especially saturated and trans fat)
- increase intake of MUFA and ω-3 fats
What is the Health Canada recommended fat intake? (%)
25-35%
What is the Health Canada recommended protein intake? (%)
10-30%
The average consumption in North America of protein is ______% of daily calories.
The average consumption in North America of protein is 16% of daily calories.
In humans there are _____ proteinogenic AAs (includes selenocysteine).
In humans there are 21 proteinogenic AAs (includes selenocysteine).
What is a proteinogenic AA?
A “proteinogenic AA” refers to an AA that can be incorporated into a protein during translation.
Do non-proteinogenic AA exist?
Yes. ex. neurotransmitters like GABA
but they are not used to make protein
How many essential amino acids are there?
9 essential AAs
What are the %s in the average body of:
water, fat/lipid, CHO, proteins, minerals
Water: 60% Fat/lipid: 20-25% CHO: 0.2% Proteins: 15% Minerals: 2%
Between Blood, Connective tissue and Skeletal muscle which has the highest % of protein?
Connective tissue (37%) > Blood (35%) > Skeletal Muscle (20%)
we store a lot of protein in muscle purely because of its mass
% protein content of animal-derived foods is generally higher than plants. True or False?
True.
Every amino acid has 4 basic building blocks. What are they? Give a brief description of each.
- Amino terminal
- Amine Functional Group - Side Chain
-Side chain has a variable composition, which may or may not contain functional group(s) - Carboxyl Terminal
- Carboxylic Acid
Functional Group contains a carbonyl carbon - α-Carbon
There are two types of AAs in the body. Standard and non-standard. Give a brief description of each.
- Standard Amino Acids:
– 20 AAs are encoded in the genetic code (but not selenocysteine)
– All are used to make protein - Non-Standard Amino Acids:
– Usually formed by post-translational modification of other AAs or as intermediates in the metabolic pathways of standard AAs
(ex. the GABA neurotransmitter is a metabolite of the amino acid glutamate)
– Many exist in the body, but they are rarely used to make
proteins
All AAs exist as enantiomers except for _____.
All AAs exist as enantiomers except for GLYCINE.
AA are naturally occurring in the ___ form.
L or D enantiomer
AA are naturally occurring in the L form.
How are D forms of AAs made?
D form of AAs are made through post-translational modifications.
At physiological pH, AAs are ionized. What is this called and how does this affect the amine and carboxyl group?
-This is called a Zwitterion
•Protonated amine group
•Deprotonated carboxyl group
Zwitterions decrease polarity by making AAs more water soluble.
True or False?
False.
Zwitterions INCREASE polarity by making AAs more water soluble.
What is the name of the bonds that keeps amino acids together?
- Peptide bonds (also known as amide bonds) are a type of covalent chemical bond
- The carboxyl group of one AA reacts with amino group of another AA, releasing H2O (condensation reaction)
What is the difference between a peptide and a protein?
A protein is a biologically active version of a peptide.
Proper peptide folding is very important for protein function.
Correct protein folding is assisted by _______ proteins.
Correct protein folding is assisted by CHAPERONE proteins.
Name the following: 2 AA= 3AA = Around 50AA = >50 AA =
2 AA= Dipeptide
3AA = Tripeptide
Around 50AA = Oligopeptide
>50 AA = Polypeptide
The primary structure of a protein is determined by the _____ _________.
The primary structure of a protein is determined by the DNA SEQUENCE.
Counting of AAs always starts from the carboxyl end. True or False?
False.
Counting of AAs always starts from the amino end.
Secondary structure of a protein is determined by ______ bonds that create a stable structure.
Secondary structure of a protein is determined by HYDROGEN bonds that create a stable structure.
The secondary structure of a protein also involves the side chains.
True or False?
False.
Doesn’t involve side chains, only backbone atoms.
There are two types of stabilized secondary structures in proteins. What are they? Give a brief description of each.
- α-helix
• An amino group makes a hydrogen bond with a carboxyl group 4 AAs down the chain, creating a helical shape in the polypeptide chain. - β-pleated sheets
• An amino group makes a hydrogen bond with a carboxyl group in the folded back polypeptide chain.
• Can be parallel or anti-parallel.
Tertiary structure corresponds to the arrangement of secondary structures.
True or False?
True.
What protein structure involves interactions between AA side chains?
Tertiary structure.
The folding in protein tertiary structure plays a role in two protein characteristics. What are they?
- Binding pockets
2. Hydrophobic regions
A disulfide bond is an example of an interaction in a _____ structure protein.
(hint: primary, secondary, tertiary, quaternary)
A disulfide bond is an example of an interaction in a TERTIARY structure protein.
A _______ structure corresponds to a combination of 2 or more _______ structures that are required to make a functional protein
A QUATERNARY structure corresponds to a combination of 2 or more TERTIARY structures that are required to make a functional protein
When proteins combine in a quaternary structure, what are the individual proteins called?
Subunits.
Proteins like insulin and immunoglobulin form multi-subunit complexes.
True or False?
True.
They are quaternary proteins with multiple polypeptides.
All proteins have a quaternary structure.
True or False?
False.
NOT all proteins have a quaternary structure.
What does the term “native protein” correspond to?
A native protein corresponds to a protein in its normal 3D configuration.
What are some examples of ways a protein can be denatured?
heat, salt treatment,
detergents, pH (stomach acid)
Explain what happens when a protein is denatured.
When a protein is denatured, it loses its bioactivity.
Denaturation affects 2°, 3°, and 4° structures (but not 1°).
*The peptide chains aren’t affected when denatured, it’s just the structure that is affected, meaning it’s no longer biologically active
Compare native and denatured albumin (egg protein).
Hint: Physical appearance
Native albumin –> transparent and liquid
Denatured (cooked) –> opaque and hard
What are the three major ways of classifying AAs?
- Essential vs. not essential
- Basic, acidic, or neutral
- Polar versus non-polar
Explain the kinds of AA classification concerning essentiality.
(Hint: 3)
- Essential AA (Indispensable)
- Not made by the body or can’t be made quickly enough to meet demands - Conditionally Essential
- Not normally required in the diet in a healthy individual, but become essential under specific contexts
(something happens to the individual for the aa to become essential) - Non-Essential (or Completely Dispensable)
- Can be synthesized in the body and are not essential in the diet
What are the essential amino acids?
9
9 AAs:
lys, thr, iso, leu, met, phe, trp, val, & his
What are the kinds of conditinally essential AAs? Give an example of each and explain.
- Born with a genetic problem:
- Phenylketonuria–> an inborn error of metabolism where a person is unable to breakdown Phe into Tyr.
• A build-up of Phe in the body causes mental retardation
• Solution: limit Phe in diet and supplement with Tyr - Develop the problem due to a disease:
- Liver disease (cirrhosis) impairs Phe & Met catabolism
• Tyr and Cys are synthesized from Phe and Met, respectively
• Tyr and Cys become indispensable in this context
What are the characteristics of basic AAs?
3
- Polar
- basic AAs (+ve charge on NH3 group on side chain enables DNA binding)
- Important in histone proteins, which bind DNA
What are the three basic AAs? Give a brief description of each.
- Lysine
- Essential
- Simple straight chain
- Absent from grain products
- Lysine Contingency? (Jurassic Park) - Arginine
-Conditionally Essential
-Preterm infants unable to synthesize arginine
-Non-essential in healthy adults
(as a child grows, it’s no longer essential)
- Plays an important role in urea cycle - Histidine
- Essential
- Ring structure
- Used to produce histamine (inflammation)
- Important in children (they can’t make it on their own, therefore essential)
What are the characteristics of Acidic AAs?
2
- Acidic AA (-ve charge on side chain carboxyl group)
2. Acidic AAs are very polar
What are the 4 acidic AAs? Give a brief description of each.
- Asparatate
- Non-essential
- Involved in protein catabolism
- Transaminated to oxaloacetate (Krebs)
- Donates nitrogen to urea cycle - Glutamate
-Non-essential
-Transaminated to α-ketoglutarate (Krebs)
-“Source” of NH3
-Used to produce
GABA (neurotransmitter) - Asparagine
- Non-essential - Glutamine
-Non-essential
-Important in AA
catabolism because it is a carrier of nitrogen (to liver & kidney)
(amino group is toxic –> can’t let it accumulate)
What is transamination?
Transamination = passing an amino group from a donor to an acceptor
What is transamination?
Transamination = passing an amino group from a donor to an acceptor
What are the characteristics of neutral AAs?
3
- Neutral AAs (no charge on side chain)
- Non polar
- Aliphatic (C & H atoms joined in straight or branched chains)
What are the two neutral AAs? Give a brief description of each?
- Glycine
- Non-essential
- No enantiomers
- Used primarily to produce porphorin (a component of
the heme protein found in hemoglobin) - Alanine
- Non-essential
- Important in AA
catabolism because it’s a carrier of nitrogen (to liver & kidney)
-Important role in glucose-alanine cycle
There is only one AA that does not have enantiomers. What AA is it an why?
Glycine has no enantiomers because it has two hydrogen side chains.
What are the characteristics of branched chain AAs?
3
- Neutral aliphatic AAs (no charge on side chain)
- Non-Polar
- All are branched
What are the three branched-chain AAs? Give a brief description of them?
- Leucine
- Isoleucine
- Valine
- All are essential
- Not catabolized in the liver, so high levels found in circulation
-Promotes protein synthesis
-BCAA levels are high in protein supplements
(not metabolized by the liver, so they go directly to the muscle)
What are the characteristics of hydroxylated AAs?
2
- OH-group on side chain is important for protein phosphorylation
- Polar AAs
What AA can be classified as both hydroxylated and aromatic?
Tyrosine.
What are the two hydroxylated AAs? Give a brief description of each.
- Serine
- Non-essential - Threonine
- Essential
Both are important for protein phosphorylation –> allow chemicals to become bioactive
What are the characteristics of sulfur-containing AAs?
- Contain a sulfur group
- Non-polar
What are the two sulfur-containing AAs? Give a brief description of each.
- Cysteine
- Non-essential
- Made from methionine
“Spares” methionine when cysteine consumed in the diet
- Used to form disulfide bonds
- Used in glutathione synthesis (oxidant defence system)
- could become conditionally essential - Methionine
- Essential
- 1st step in the synthesis of all proteins
- Methionine is limiting in legumes
What are the characteristics of aromatic AAs?
2
- Contain Aromatic rings
2. Non-polar (except tyrosine because of the OH group in its side chain)
What are the 4 aromatic AAs? Give a brief description of each.
- Phenylalanine
- Essential
- Used to make Tyr - Tyrosine
- Non-essential
- “Spares” Phe (if tyr is high in diet)
- Used to synthesize neurotransmitters - Tryptophan
- Essential
- Used to make serotonin (mood)
- Used for niacin (Vit B3) synthesis - Proline
- Non-essential
- Important for collagen production (extracellular matrix)
- Aliphatic side chain
Most proteins require some type of modification before they are biologically functional.
True or False?
True.
Where do post-translational modifications take place?
PTMs take place in polypeptide chains, not free AA.
What are the 5 kinds of post-translational modifications?
- Phosphorylation by kinase enzymes
- Hydroxylation
- Gamma-carboxylation
- Iodination
- ADP-ribosyltaion
Give some examples of phosphorylation (PTM). What is it dependent on?
- Serine-OH
- Threonine-OH
- Tyrosine-OH
Phosphorylation is phosphorus dependent.
Give some examples of hydroxylation (PTM). What are they dependent on?
- Lysine –> hydroxylysine
- very important in elastin subunits
- copper dependent
- associated with aortic rupture
- Proline–> hydroxyproline
- very important in collagen subunits (allows the extracellular matrix to be made; gives tissues their structure)
- Vit C dependent
- associated with scurvy
Explain gamma-carboxylation (PTM). Why is it important and what is it dependent on?
- Required for calcium homeostasis and blood clotting
- Certain proteins are modified to become Ca2+ binding proteins
- Another carboxyl group is added to glutamate
- Vitamin K dependent
Explain iodination (PTM). Why is it important and what is it dependent on?
- Critical in the formation of thyroid hormones
- Crucial for regulation of the metabolic rate
- Iodine deficiency in about 2 billion humans
- Iodine dependent
Explain ADP-ribosylation. Why is it important and what is it dependent on?
- Adding ADP-ribose to an acceptor protein
- Critical for DNA repair and regulation of protein function
- Dependent on Vit B3 (niacin)
- Niacin used to form NAD+. When NAD+ is broken down in the cell, ADP-ribose
and nicotinamide are the products.
Briefly explain protein digestion in the mouth (2), stomach (2), pancreas (1), and small intestine (3).
- Mouth
- No enzymatic digestion
- Mechanical breakdown only - Stomach
- HCl in gastric juice (proteins denatured)
- Pepsin (endopeptidase) - Pancreas
-Pancreatic juice containing zymogens
(inactive digestive proenzymes) - Small Intestine
- Zymogens are activated
- Enzymes break-down peptides
- Absorption of AAs
HCl in the stomach is secreted from ______ cells.
HCl in the stomach is secreted from PARIETAL cells.
The release of HCl in the stomach is triggered by what?
HCl release is triggered by gastrin, acetylcholine, and histamine.
What are the functions of HCl?
- Denatures proteins
- breaks: hydrogen bonds, electrostatic bonds - Activates pepsin
How does HCl activate pepsin?
HCl denatures pepsinogen (changes the shape) and then the protein becomes active.
(undergoes a proteolytic cleavage)
Pepsin is secreted as ______, which is an inactive zymogen.
Pepsin is secreted as PEPSINOGEN, which is an inactive zymogen.
Pepsin is activated in an _____ pH, and inactive at a _______ pH.
Pepsin is activated in an ACIDIC pH, and inactive at a NEUTRAL pH.
Pepsin is an ________, i.e., in other words, it cleaves peptide
bonds within the polypeptide chain.
Pepsin is an ENDOPEPTIDASE, i.e., in other words, it cleaves peptide
bonds within the polypeptide chain.
*This generates mostly oligopeptides and some free AAs.
Polypeptide cleavage occurs only at ends.
True or False?
False.
Polypeptide cleavage occurs not only at ends, but in the middles as well (different length oligopeptides)
In the small intestine, where is enteropeptidase located? What is its function?
Enteropeptidase is located in the brush border.
Enteropeptidase activates trypsinogen to trypsin.
What zymogens & proenzymes are made in the pancreas?
Trypsinogen, chymotrypsinogen, proelastase, procaboxypeptidase A & B.
Once trypsin is activated, what does it do?
Trypsin activates other zymogens:
Chymotrypsinogen –> Chymotrypsin
Proelastase –> Elastase
Procarboxypetidases –> Carboxypeptidase
Most AAs are absorbed in the upper small intestine.
True or False?
True.
What are the two ways AAs are absorbed?
- Facilitated diffusion
- Active transport (> 60% of AAs are absorbed this way, it is the dominant system)
- sodium-dependent transporters (indirect ATP requirement)
Non-essential AAs are absorbed faster than essential AAs.
True or False?
False.
ESSENTIAL AAs are absorbed faster than non-essential AAs.
Competition for absorption exists between AAs.
True or False?
True.
____ AAs have no absorptive advantage over AAs in _____.
FREE AAs have no absorptive advantage (i.e. protein supplements) over AAs in FOOD.
*Important to consider when incorporating protein supplements into diet, because protein supplements often have BCAA
____ AAs have no absorptive advantage over AAs in _____.
FREE AAs have no absorptive advantage (i.e. protein supplements) over AAs in FOOD.
*Important to consider when incorporating protein supplements into diet, because protein supplements often have BCAA
AAs are either transported out of the intestinal cell or used directly within the enterocyte. What are AAs used for?
(2)
- energy
- synthesis of new protein
*Estimates indicate 30-40% of essential AA are used in the small intestine
Glutamine is highly used in intestinal enterocytes for what?
4
- Generate energy for the cell
- Stimulate cell proliferation (to replace shed enterocytes)
- Increase synthesis of heat shock proteins (chaperones)
- Drive mucus production, which helps to prevent bacterial translocation
The liver is very effective at taking up AAs from circulation.
True or False?
True.
How does the liver use AAs?
Liver uses ~20% of the AAs to:
- Make new proteins
- Make new enzymes
- Make albumin and other transport proteins
- Make peptide hormones
Liver catabolizes the remaining 80% of AAs, where:
- NH3 sent to the urea cycle
- Carbon skeleton sent to Kreb’s cycle (for energy) or used for gluconeogenesis or lipogenesis
Can BCAAs be taken up by the liver?
No. BCAAs are not taken up by liver, and instead are anabolic signals for tissues like muscle
What are the 4 aspects to consider when discussing protein quality?
- AA composition
- Digestibility
- Presence of Toxic factors
- Species consuming the protein
Explain AA composition (protein quality).
Any protein that provides all essential AA = “high quality”.
Animal protein > plant protein.
Ex. grains are limiting in lysine, legumes are limiting in sulfur-containing AA (methionine).
Explain Digestibility (protein quality).
Some proteins are more digestible than others. More digestible = higher quality.
Animal protein > plant protein.
Ex. Some materials, like hair, have a great amino acid balance but are indigestible.
Explain the Presence of toxic factors (protein quality).
Less toxic factors = higher quality.
Animal protein > plant protein.
Plants contain thousands of phytochemicals.
Ex. soybeans contain
trypsin inhibitors with interfere with trypsin, thus preventing protein digestion.
Explain “species consuming the protein” (protein quality).
Humans, pigs and chickens have similar protein needs.
Ruminants have bacteria in the rumen that can make all AAs, so none are considered essential (remember that ruminants can use low quality protein sources).
What is Protein Efficiency Ratio (PER)? Explain its process.
PER = Official method in Canada for the evaluation of protein quality
- With this method, young rats are fed a diet for 4 weeks. The diet has all nutrients present at adequate levels except for protein, which is included at 10% of the diet
- 10% protein is marginal for health. If there is anything wrong with the protein source, growth of rats will be impacted
- Rats are weighed at the beginning and end of the 4 weeks. Food consumption is carefully monitored
How is PER (protein efficiency ratio) calculated? Give an example.
PER = gain in body mass (g) / total protein intake (g)
An optimal PER value is 2.0 (2g of rat growth per gram of intake) = whole egg
ex. rat gains 10g and eats 14g, PER= 10g/14g = 0.71
What are the pros of PER? (3)
- Simple
- Cheap
- Very sensitive to AA balance, digestibility, toxic factors
What are the cons of Protein efficiency ratio?
- Rats are not humans
- Growth, not maintenance
- You don’t know WHY a protein is poor quality
What is a chemical score (CS) of a protein? (assessing protein quality) Explain its process.
CS =
- the test protein is chemically digested into free AAs
- these are then quantified by chromatography, and mathematically compared to the composition of whole egg protein
How do you calculate the chemical score of a protein? Give an example.
CS = (abundance of first limiting AA in test protein / abundance of same AA in whole egg) x 100
ex. CS of wheat % lysine in egg = 7.2 % lysine in wheat = 2.7 (2.7/ 7.2) x 100 = 37 the CS of wheat protein is 37.
What are the pros of chemical score assessment? (protein quality)
•Simple and cheap
•Identifies the limiting AA in the food
•Used to optimize feeds by mixing
different sources of protein
What are the cons of chemical score assessment? (protein quality)
- Doesn’t account for digestibility or toxins (e.g. hair)
* Is whole egg an ideal protein?
What is nitrogen balance (protein quantity)? How is it calulated
Nitrogen balance = a measure of N loss (urine, feces, sweat) and N intake (diet)
Nitrogen Balance (NB) = Nitrogen Intake – Nitrogen Loss
During growth, pregnancy, and times of tissue repair (NB < 0).
True or False?
False.
During growth, pregnancy, and times of tissue repair (NB > 0).
What happens when you don’t have enough protein? (NB< 0)
- The problem is worsened with poor protein quality because body proteins are used as a source of essential AA
(in other words, body proteins are broken down to “free up” essential AA, ultimately leading to a loss of function)
– NB < 0 is seen in people with serious tissue injuries, wasting diseases like sarcopenia, and long-term fasting
Problems with poor protein quality may be overcome with high protein quantity.
True or False?
True.
This is commonly observed in developed countries like USA.
For most adults, NB = 0
True or False?
True.
People are generally in balance.
Protein requirements vary with life stage. When are protein requirements higher?
(5)
Protein requirements are higher during infancy, childhood, teenagers, and during pregnancy & lactation.
Recommendations for protein requirements are based on ANIMAL sources of protein.
True or False?
True.
Plant sources may be less digestible due to differences in the nature of protein and other components (fibre). If recommendations used plant sources of protein, the values would be higher.
How can you have an excessive intake of protein?
2
- High protein diets (Atkins, South Beach)
2. Protein Supplementation
How can you have an deficient intake of protein?
2
- Deficient in both protein quantity and energy (overall malnutrition)
- Deficient in only protein quantity
Typically, high protein diets are low in carbs.
True or False?
True.
What are 3 common high protein diets?
- Atkins Diet (most criticized) (C:F:P = 3:64:33)
- Different phases where macronutrient content varies.
- CHO intake very low, while fat and protein intake very high (~30% protein).
- Criticized because no attention to type of CHO or fat consumed. - South Beach diet (C:F:P = 30:40:30)
- Different phases where macronutrient content varies.
- For CHO intake there is an emphasis on low GI foods.
- Protein is consistent throughout the various phases (~30%) - The Zone Diet
- Not really a high protein diet, rather a balanced diet.
All high proteins diets are created equal.
True or False?
False.
All high protein diets NOT created equal
– Huge differences in macronutrient content and the types of CHO/fats consumed, so it’s hard to compare outcomes.
What are some observed clinical results of high protein diets?
(4)
- short term weight loss is comparable to other diet approaches.
- Some studies show improved insulin sensitivity with high protein as compared to high CHO diets
(probably due to reduced burden on the pancreas to generate insulin). - Conflicting results with respect to effect on cardiovascular disease. A moderate increase in protein appears to be cardioprotective, but high protein may be a concern in the long-term.
- People with kidney diseases should avoid high-protein diets.
Supplements help to ensure that the correct balance of AAs are delivered to the muscle.
True or False?
True.
HOWEVER, this would be the same if a person ate a high quality protein (eggs, meat, fish).
Most protein supplements deliver high levels of ______, are rapidly absorbed and delivered to the muscle.
Most protein supplements deliver high levels of BCAAs, are rapidly absorbed and delivered to the muscle.
Anabolic response of the muscle to a protein meal gradually diminishes after __ years of age.
Anabolic response of the muscle to a protein meal gradually diminishes after 40 years of age.
*this can be improved with BCAA supplements
_______ is a protein and energy deficiency.
MARASMUS is a protein and energy deficiency.
Explain what happens in Marasmus.
- Very low intake of a balanced diet with around 8-10% protein (so just a bit below what is needed).
- Because everything is in balance, the body
switches to starvation mode. - Well organized utilization of body fuel stores allows survival, eventually leading to a complete loss of body fat which causes a wrinkled appearance to the skin
Characterized by: complete loss of body fat and muscle, peeling skin, uneven pigmentation
_______ is a protein deficiency.
KWASHIORKOR is a protein deficiency.
Explain what happens in Kwashiorkor.
- Diet has sufficient Calories, but is deficient in protein
(Only 1-2% protein in the diet) - Typically seen in developing countries where agriculture is key
- High CHO foods (e.g., tuber cassava)
– When child is weaned from mother’s breast milk (very balanced source of nutrients) to cassava porridge (no protein or fat)
– Lots of CHO, but no protein to metabolize or transport nutrients
Characterized by: enlarged abdomen, ‘burns’ on the skin and diarrhea
Why do people with Kwashiorkor have an enlarged abdomen?
- Decreased plasma proteins causes an osmotic imbalance in the gut (edema); leads to a swelling of the gut
- Liver is enlarged due to the inability to export fat from the liver (can’t make VLDL)
Marasmus and Kwashiorkor typically co-exist in susceptible individuals.
True or False?
True.
What are the variable and acute protein/ energy restrictions? (protein deficiency)
- Variable protein/energy restriction:
When the dietary challenge fluctuates over time (i.e., feast and famine).
-People typically survive these challenges, but can be quite ill for several months of the year. - Acute protein/energy restriction:
When a severe dietary challenge sets in.
-If there is no change, then this would cause death after 1-2 months.
Only Marasmus leads to immune dysfunction.
True or False?
False.
BOTH Marasmus & Kwashiorkor lead to immune dysfunction.
There is a constant turnover between protein synthesis & breakdown in the body.
True or False?
True.
Lect. 11, slide 2
How does the protein reuse AAs during protein breakdown?
Most AAs derived from protein breakdown are reused to make new protein, while a little is catabolized.
(made from carbon skeleton or ammonia)
When it comes to the fate of NH3/NH4+ from AA catabolism, what are 3 differences between the fasted and fed state?
- Fasted state involves the formation of both glutamine and alanine, while the fed state is primarily glutamine.
- Fed state involves both the liver and kidneys.
- Fed state involves the excretion of NH4
+ as urea, whereas the fasted state involves the excretion of ammonium (NH4
+) directly.
Why don’t we die when we eat a high protein diet? (i.e. the fed state)
(2)
- The liver converts the amino group to urea in a process that uses HCO3-
- Metabolism of Sulfur-containing AA produces a bit of sulphuric acid to neutralize pH
Why don’t we die when we eat a high protein diet? (i.e. the fed state)
(2)
- The liver converts the amino group to urea in a process that uses HCO3-
- Metabolism of Sulfur-containing AA produces a bit of sulphuric acid to neutralize pH
What happens with proteins when we are in a fasted state?
- minor amounts of protein are catabolized to release glucogenic amino acids (for gluconeogenesis)
- however the primary source of energy is fat (TAG) - The breakdown of TAG leads to the production of acidic ketone bodies
*The brain will start to use ketone bodies instead of glucose, but there is production of a slightly acidic molecule
Long-term fasting encourages a slight ________ (pH can ___ to 7.0). This is also known as nutritional _____.
(Hint: fasted state regarding proteins)
Long-term fasting encourages a slight ACIDOSIS (pH can DROP to 7.0). This is also known as nutritional KETOSIS.
What happens to the products of TAG breakdown during the fasted state?
Products of TAG breakdown (long hydrocarbon chains) are not very water soluble.
The liver converts these long hydrocarbons into small soluble ketone bodies (which the brain can uses for energy during starvation).
Why don’t we die during a longer-term fast?
AA catabolization
When AAs are catabolized in the fasted state, the amino group is brought directly to the kidney (thus bypassing the urea cycle where HCO3- is used up.) This means that HCO3- produced in the Kreb’s cycle can be used to neutralize the weak acidosis state caused by ketones.
Why don’t we die during a longer-term fast?
AA catabolization
When AAs are catabolized in the fasted state, the amino group is brought directly to the kidney (thus bypassing the urea cycle where HCO3- is used up.) This means that HCO3- produced in the Kreb’s cycle can be used to neutralize the weak acidosis state caused by ketones.
What are the 4 AAs that are important in nitrogen metabolism?
- Glutamate
- Aspartate
- Alanine
- Glutamine
Why is Glutamate important in nitrogen metabolism?
- Incredibly important in AA catabolism
- It is a common end product of transamination reactions
- α-ketoacid for glutamate is alpha-ketoglutarate
Why is Aspartate important in nitrogen metabolism?
- Donates an amino group in the urea cycle
- α-ketoacid for asparatate is oxaloacetate
Why is Alanine important in nitrogen metabolism?
- Inter-organ nitrogen carrier (goes to liver)
- α-ketoacid for alanine is pyruvate
Why is Glutamine important in nitrogen metabolism?
- Most abundant AA in the body
- Inter-organ nitrogen carrier (goes to liver & kidney)
- Can donate a NH3 group to other reactions
What are the 4 reactions that move nitrogen from catabolize protein between organs for excretion?
- Transamination
- Oxidative deamination
3a. Glutamine production
3b. Glutamate Regeneration - Urea cycle
What are the 4 reactions that move nitrogen from catabolize protein between organs for excretion?
- Transamination
- Oxidative deamination
3a. Glutamine production
3b. Glutamate Regeneration - Urea cycle
Briefly explain transamination.
Transamination = transfer of an amino group to an AA carbon skeleton
(i.e., α-ketoacid) –> catalyzed by “aminotransferases”
Most AAs undergo transamination except…..? (3)
most AA undergo transamination (except lysine, proline, and threonine)
_____ ______ (active form of Vit B6) is the coenzyme that holds the NH3 group during transamination.
PYRIDOXAL PHOSPHATE (active form of Vit B6) is the coenzyme that holds the NH3 group during transamination.
What are some characteristics of transamination?
4
- Bi-directional reactions
- Active in all tissues
- Always produces an AA (usually glutamate) and α-ketoacid
- At least 1 transaminase exists for each AA, with each using glutamate/ alpha-ketoglutarate as one of the pairings
What are the most abundant aminotransferases in the liver?
What are their respective reactions?
- Glutamate pyruvate transaminase (GPT) (also known as ALT)
Alpha-ketoglutarate + alanine –> Glutamate + Pyruvate
- Glutamate oxaloacetate transaminase (GOT) (also known as AST)
Alpha-ketoglutarate + Aspartate –> Glutamate + Oxaloacetate
Glutamate and alpha-ketoglutarate play key roles in amino acid metabolism.
True or False?
True.
What is the main AA to undergo oxidative deamination? Why?
Glutamate is the main AA to undergo oxidative deamination.
Because glutamate is the main product of transamination.
Give a brief description of oxidative deamination.
- NH3 is released from the glutamate backbone
- Reaction favours the formation of alpha-ketoglutarate
- A process that is very active in all tissues in the body
*This is a point in the pathway –> how to get the amino group out of glutamate
The uses of free NH4+ after oxidative deamination are tissue-dependent. What occurs i the extrahepatic tissue (EHT), the liver, and the kidneys?
- Extrahepatic tissue (EHT)–> the
NH4+ is used in the synthesis of
glutamine - Liver–> NH4+ is used for urea synthesis
- Kidneys–>NH4+ is excreted directly as is into urine
Give a brief description of Glutamine production.
- Formation of glutamine (primary inter-organ nitrogen carrier)
- Muscles are the main producer of glutamine (produces ~90% of the glutamine found in the body)
What enzyme catalyzes the reaction :
Glutamate + NH4+ –> Glutamine
Glutamine synthetase.
Glutamine is the most abundant AA in blood.
True or False?
True.
What happens to glutamine in the fed state? In the fasted state?
Fed state –> travels to liver
Fasted state –> travels to kidney
Give a brief description of glutamate regeneration.
- Opposite reaction to glutamine production; however, a different enzyme is required
- Releases NH3 (NH4+) from the glutamine side chain (i.e., deamination)
- Active in liver in the fed state (NH3 used for urea synthesis)
- Active in the kidney during fasting (NH3 secreted as NH4+)
“Make glutamine in muscle –> travel in blood to deliver NH3 to liver / kidney –> regenerate glutamate”
In what reaction does this flow chart occur?
Glutamate regeneration.
What enzyme catalyzes glutamate regeneration?
Glutaminase.
Give a brief explanation of the urea cycle.
2
- Toxic NH4+ is converted to less toxic urea in the liver
2. Urea transported to kidney for excretion
Complete the sentence for both fed and fasted state:
80-90% of urinary N will be in the form of ______.
Fasted state:
80-90% of urinary N will be in the form of NH4+.
Fed state:
80-90% of urinary N will be in the form of UREA.
Where does the NH4+ in the urea cycle come from?
- Oxidative deamination
2. Glutamate regeneration from glutamine
In the urea cycle, aspartate condenses with ______ and _____ an amino group.
In the urea cycle, aspartate condenses with CITRULLINE and DONATES an amino group.
The urea cycle uses HCO3-, thereby preventing _______.
The urea cycle uses HCO3-, thereby preventing ALKALOSIS.
The urea cycle requires energy in the form of ATP.
True or False?
True.
What happens if there are defects in any of the enzymes in the urea cycle?
Defects lead to developmental neurotoxicity due to a build-up of NH4+ in the body.
Alanine can travel within the body. What is this cycle called?
Cahill cycle.
For every glucose, how many alanine do you get?
For every glucose, you get 2 alanine.
1 glucose = 2 pyruvates; each pyruvate undergoes transamination to alanine
Give a summary of nitrogen metabolism in the fed state.
Fed state:
- non-liver protein catabolism leads to glutamine formation (from glutamate).
- Glutamine is transported to the liver, where it delivers an amino group for urea production.
- Urea is then transported to the kidney and excreted in urine.
Give a summary of nitrogen metabolism in the fasted state.
Fasted state:
- non-liver protein catabolism leads to glutamine formation (from glutamate) and alanine (from pyruvate).
- Glutamine is transported directly to the kidney, while alanine is sent to the liver (for gluconeogenesis).
- In the kidney, glutamine is converted to glutamate and the removed amino group is excreted in urine as NH4+.
In both the fed and fasted states, while nitrogen excretion as urea and NH4+ dominate, respectively, there will still be a small amount of the other being excreted.
True or False?
True.
In both the fed and fasted states, while nitrogen excretion as urea and NH4+ dominate, respectively, there will still be a small amount of the other being excreted.
True or False?
True.
When the body’s energy sources are low, protein is broken down. AA catabolism releases (1) _____ ____ and (2) ______.
When body’s energy sources are low, protein is broken down. AA catabolism releases (1) AMINO GROUP (NH3), and (2) α-KETOACID.
α-ketoacids can be formed in two ways. What are they? Briefly explain each.
- Deamination –> removal of amino group from AA. The carbon skeleton that remains is the α-ketoacid (mostly seen with glutamate).
- Transamination –> transfer of an amino group from an AA to an α-ketoacid. In the process, the “donating” AA becomes an α-ketoacid and the “receiving” α-ketoacid becomes an AA.
α-ketoacids contain ______ and ______ functional groups.
α-ketoacids contain KETONE and CARBOXYLIC ACID functional groups.
What does a ketogenic AA mean?
Ketogenic –> a degraded AA that can be converted into Acetyl CoA
What does a glucogenic AA mean?
Glucogenic –> a degraded AA that can be converted into Glucose.
What molecules in the krebs cycle are ketogenic?
- Acetyl CoA (leucine)
- Acetoacetyl CoA (lysine)
(lecutre 11 slide 19)
What molecules in the krebs cycle are glucogenic?
- Pyruvate
- α-ketoglutarate
- Succinyl-CoA
- Fumarate
- Oxaloacetate
Intermediates with ___ to ___ carbons can be used to make glucose.
(Hint: blanks are numbers)
Intermediates with 3 to 6 carbons can be used to make glucose.
Once you form Acetyl CoA you can no longer use the building blocks to make glucose. Why?
Because Acetyl CoO is purely ketogenic.
What does “Fat burns in the flame of CHO” mean?
To burn fat, you must have an active Kreb’s cycle, which depends on availability of oxaloacetate (a CHO).
*Doesn’t matter how much fat you have, if you don’t have oxaloacetate there won’t be any energy production.
Burning fat is a problem when glycogen is present.
True or False?
False.
Burning fat is NOT a problem when glycogen is present (have oxaloacetate).
When glycogen is depleted, you have _______ to maintain blood glucose.
When glycogen is depleted, you have GLUCONEOGENESIS to maintain blood glucose.
(from glycogenic AA catabolism)
Oxaloacetate is a glucogenogenic precursor, how does this affect the Krebs cycle and the burning of fat?
Oxaloacetate is a gluconeogenic precursor, so if something ELSE isn’t doing this job, oxaloacetate will be used to make glucose and the Kreb’s cycle slows and can’t burn fat.
How long does it take for glucose to be depleted from the body?
24 hours.
For proper body function you must maintain blood glucose and blood pH at certain levels. What are they?
Blood glucose: between 60-100mg/dL (<60mg/dL you develop a coma and die)
Blood pH: near neutrality (related to amino group handling)
Blood glucose is required for …….?
3
- always required by RBC as energy substrate (no mitochondria)
- required by central nervous system (brain)0 (although gradual adaptation to ketones is possible)
- maintaining an active Kreb’s cycle
What are the 4 metabolic states? What is the predominant source of blood glucose in each of these states?
- Fed
-Dietary CHO (if high carbohydrate diet)
-Dietary protein (if high protein diet)
(any leftover AAs are used) - Post-absorptive (no food left in GIT)
- Glycogen from liver (direct) and muscle (indirect) - Fasting (no glycogen) (after 24 hours)
- Gluconeogenesis from protein catabolism (only in liver) - Starvation (several days, have biochemical adaptations)
-Gluconeogenesis from glycerol produced by TAG
breakdown; some protein catabolism
What is the macronutrient flux?
Macronutrient flux –> the way our body is using carbs, fats, proteins
Macronutrient flux is regulated by multiple ______ and numerous _____.
Macronutrient flux is regulated by multiple TISSUES and numerous HORMONES.
What happens in short-term macronutrient flux?
Short-term = (minutes to hours) i.e., between meals
Tissue crosstalk:
- Hormones move throughout the body and activate signalling pathways in their target tissues
(e. g. insulin, glucagon, epinephrine, etc.) - Hormones usually affect protein function
(e. g. phosphorylation or de-phosphorylation of enzymes) - This occurs rapidly because protein is already made and waiting for modification
What happens in long-term macronutrient flux?
Long-term = (several hours to days) i.e., fasting, starvation
– Affects gene expression
*Cell says “i need to start making different proteins that will allow me to respond in different ways”; it needs to make rna, translate, etc. this takes a lot of time
What are the 4 main hormones that regulate metabolism? What is the nature of these hormones and what are they produced by?
- Insulin
- Anabolic
- Pancreas (β-cells ) - Glucagon
- Catabolic
- Pancreas (β-cells ) - Corticosteroids (cortisol)
- Catabolic
- Adrenal Cortex - Catecholamines (epinephrine)
- Catabolic
- Adrenal medulla
T3 (T4) are hormones produced by the thyroid that affect metabolic rate rather than metabolic regulation.
True or False?
True.
How does insulin regulate metabolism?
↑ glucose and AA uptake in muscle and liver
↑ glycogen and protein synthesis in muscle
and liver; ↑ fat synthesis and storage
How does glucagon regulate metabolism?
↑ breakdown of glycogen, protein & fat
↑ gluconeogenesis from AAs and glycerol
How do corticosteroids regulate metabolism?
↑ Muscle protein catabolism
↑ gluconeogenesis from AAs
How do catecholamines regulate metabolism?
↑ glycogenolysis and lipolysis
at the level of adipose tissue
The brain has a high requirement for ______ _________ to support its continuous electrical activity.
The brain has a high requirement for OXIDATIVE METABOLISM to support its continuous electrical activity.
How much glucose does the brain require per day?
100-120g of glucose per day
What are carbs so important to the brain?
Fatty acids can’t cross the blood-brain barrier enough to provide sufficient energy
(ketone bodies CAN cross but it requires adaptation)
During an overnight fast, liver produces 2 mg/min glucose per kg body weight. How much of this does the brain use?
Brain consumes about half of this.
Although the liver is a regulating organ, it does not regulate blood glucose levels.
True or False?
False.
The liver DOES regulate blood glucose levels.
What happens to extra carbs in the body?
Extra carbs get converted into Fatty Acids.
Insulin sends glucose to acetyl coA, acetyl CoA is turned into FA.
Glucose –> pyruvate –> acetyl coA –(ACC) –> Malonyl CoA –> Fatty Acid
How/ Why is the liver a major site for fatty acid β-oxidation?
- Fatty acids (FAs) from diet and de novo lipogenesis
2. Only tissue to produce ketone bodies (*critical during starvation)
Adipose tissue has a high energy requirement, therefore has a lot of oxidative fuel consumption.
True or False?
False.
Adipose tissue has a LOW energy requirement, therefore NOT A LOT of oxidative fuel consumption.
*doesn’t need a lot of energy to perform its function of storing fat
What is glucose in adipose tissue used for?
- For TAG synthesis
2. Provides energy for fatty acid uptake (via LPL)
What is the main function of adipose tissue?
Hint: answer is not fat storage
•Releases non-esterified fatty acids (NEFA) into circulation (from lipolysis)
- Depending on circumstances, NEFA can be a major metabolic fuel for the body
- NEFA are the same thing as “free fatty acids”
*Notice that lipolysis occurs in adipose tissue.
Skeletal muscle represents around ____% of body weight.
Skeletal muscle represents around 40% of body weight.
What are the main regulators of muscle fuel consumption?
2
- Nutritional status
2. Exercise
Muscles are composed of two different kinds of fibres. What are they? Give a brief description of each.
- Slow-twitch
- Used for long duration activity, slow contraction
- Predominant source of energy = Fatty acids
(i. e., NEFA from adipose tissue) - Fast twitch
- Used for short duration activity, quick contraction
- “Local” glycogen stores = energy source
Give a brief description of what happens during intense exercise (anaerobic)
(4)
(e.g. weight-lifting and sprinting) • hormones are too slow to act • signal = Ca2+ release • energy released from: - muscle glycogen stores - muscle creatine phosphate
Give a brief description of what happens during sustained exercise (aerobic)
(3)
(e.g. jogging)
• diffusion of substrates & O2 from blood
• slow process
• energy released from complete oxidation of glucose and fatty acids
Briefly explain the cross-over concept.
- low-to-moderate intensity exercise–> fatty acids are the primary source of energy
- high intensity exercise–> glucose is the primary source of energy