A1 Molecules Flashcards

1
Q

What is electronegativity in water?

A

Affinity to electrons - Oxygen’s electronegativity is higher than hydrogen’s; shared electrons between oxygen and hydrogen are more drawn to oxygen

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2
Q

What are hydrogen bonds?

A

H binds with N, O, F for strongest intermolecular forces
Water consists of H₂O
Polar covalent bonds between O&H
Unequal sharing of electrons -> partial charges (O⁻/H⁺)

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3
Q

What are the uses of water in biology?

A

Water is a good temperature buffer as it has a high specific heat capacity, preventing proteins from denaturing
Transport
Solvent

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4
Q

How does water have solvent properties?

A

Water is polar, allowing it to dissolve solutes (other polar molecules)

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5
Q

What is cohesion?

A

Ability of water molecules to cohere (stick to one another)

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6
Q

What is adhesion?

A

Ability of water molecules to adhere (stick to solid surfaces)

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7
Q

What is transpiration?

A

Movement of water through a plant due to evaporation of water from the stomata

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8
Q

What does hydrophilic mean?

A

Water-loving - polar

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9
Q

What does hydrophobic mean?

A

Water-hating/fearing - non-polar

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10
Q

How is water a transport medium for metabolism?

A

Transport in plants
- Xylem: water
- Phloem: sucrose
Blood transport in animals
- Ions, glucose, amino acids: good solvent
- Oxygen, fats: not soluble, have to be carried by cells or proteins

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11
Q

What is buoyancy?

A

A force exerted upwards on an object
Denser objects will sink
Less dense objects will float
Most aquatic organisms have about the same density as water
Some organisms can adjust their buoyancy

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12
Q

What is density?

A

Ice is less dense than water, and steam is least dense

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13
Q

What does viscosity mean?

A

A fluid’s resistance to flow

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14
Q

What is thermal conductivity, and how does it relate to water and biology?

A

The ease with which heat passes through a material
Oils, fats, air, wood -> insulators
Water is a conductor
Blood can transfer heat easily (good and bad)

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15
Q

What is specific heat?

A

Energy required to raise the temperature of 1g by 1°C
Water has high specific heat capacity (4.18 J/g°C)
Moderating effects of aquatic environment
Maintenance of body temperature

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16
Q

What are the consequences for animals in aquatic habitats?

A

Animals in different habitats
Ringed seal has evolved to live in water
Arctic loon has evolved to live in air

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17
Q

What are the states of water?

A

Solid (<0°C)
Liquid (0-100°C)
Gas (>100°C)

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18
Q

Water on Earth

A

Water originated 4.5 billion years ago
Water may have come to Earth via extraplanetary objects
- Ice from asteroids and comets
(First life started 3.8 billion years ago)
Water covers 71% of Earth
Earth is situated in a Goldilocks’s Zone
(Water doesn’t evaporate or freeze)

19
Q

Hydrogen vs Deuterium

A

Deuterium is an isotope of hydrogen
H₂O vs D₂O
Light water vs heavy water

20
Q

What is astrobiology?

A

Look for life elsewhere through known requirements on Earth
Luck, Time, Location
Water, carbon, phosphorous, sulphur

21
Q

What are the four biological molecules?

A

Carbohydrates
Lipids
Proteins
Nucleic acids

22
Q

What are the two types of nucleic acids?

A

DNA (deoxyribonucleic acid) and RNA (ribonucleic acid)

23
Q

What are the components of a nucleotide?

A

Phosphate group connects nucleotides, attached to a pentose sugar (ribose in RNA and deoxyribose in DNA), which is attached to a nitrogenous base (adenine, guanine, cytosine, and thymine in DNA (uracil in RNA)

24
Q

Sugar-phosphate bonding and backbone of DNA and RNA

A

Nucleotides are linked together by covalent bonds between the phosphate of one nucleotide and the sugar of another
Forms a strong sugar/phosphate backbone
Covalent bonds can be specified phosphodiester bonds

25
Ribose / deoxyribose (Pentose sugar)
5 carbons, 1 oxygen C to the right of O is C₁, the carbons following in a clockwise manner are C₂, C₃ and C₄ connecting back to O C₅ comes off of C₄ connecting to the phosphate group
26
Phosphate group
Phosphorous connected to 2 O⁻ molecules with a single bond, one -OH group, and double bonded to one O One of the O⁻ molecules loses the - when connected to sugar
27
What are the bases that form basis of code?
DNA: - Adenine - Thymine - Guanine - Cytosine RNA: - Adenine - Uracil - Guanine - Cytosine Purines (double rings): A, G Pyrimidines (single rings): T, U, C
28
What are condensation reactions?
Removal of water to create a bond
29
Condensation of nucleotide molecules
2 nucleotide molecules can join together with a phosphodiester bond -OH on the phosphate group and the -OH coming off of C₃ of the ribose can condense, leaving an O between them in covalent bonds Water (H₂O) comes off as a byproduct
30
Why is DNA antiparallel and solid?
Strands are parallel, but run in opposite directions Van der Waals (intermolecular forces) i.e. hydrogen bonds connect between bases of different strands
31
Complementary base pairing
A-T (U in RNA) and G-C A-T have 2 hydrogen bonds G-C have 3 hydrogen bonds
32
DNA
longer polymer of nucleotides double stranded deoxyribose sugar adenine pairs with thymine
33
RNA
shorter polymer of nucleotides single stranded ribose sugar adenine pairs with uracil
34
Why is DNA semiconservative?
Each resulting copy is made of one parents strand and one new strand
35
What is gene expression?
Using the codes in DNA to synthesise a protein
36
What is protein synthesis?
DNA -> RNA -> protein These steps follow rules of complementary base paring
37
How is DNA adapted to store information?
DNA molecules can vary in length Many possibilities for unique sequences DNA is only 2 nm in diameter, so cells can store long lengths of DNA 1 nm = 1×10⁻⁹ m (0.000000001 m)
38
Evidence of Universal Common Ancestry
Same codons (3 base pairs) on RNA code for same amino acids in almost every organism Universal genetic code Evidence that all life arose from a universal common ancestor
39
Directionality of RNA and DNA
5' end and 3' end 5' is where phosphate of same nucleotide is connected (C₅) 3' is where phosphate of different nucleotide attaches (C₃) Antiparallel: 5'-3' vs 3'-5' New nucleotides can only be attached to 3'
40
What is a nucleosome?
DNA wrapped twice around a core of 8 histone proteins Additional H1 histone stabilises the nucleosome and helps condense the DNA Joined by linker DNA Eukaryotes have nucleosomes Prokaryotes have naked DNA and no histone proteins
41
Background information on Hershey-Chase experiment
1950s Knew chromosomes were made of DNA and protein and that they carried genetic information Which was responsible for transmitting hereditary information: DNA or protein? Viruses are also made up of DNA and protein
42
What is the Hershey-Chase experiment?
Bacteriophages Marked some with sulphur which adheres to proteins - radioactive protein coat Marked others with phosphorous which adheres to DNA Allowed marked viruses to infect bacterial cells Viruses inject genetic information Mixture of bacteriophage remnants and infected cells were placed into centrifuge, which spun them around and separated them by weight Cells are heaviest and go towards the bottom They noticed the marked DNA was the one in the cell
43
What was Chargaff's data?
Tetranucleotide hypothesis: DNA consisted of a repeating sequence of 4 nucleotides in equal amounts and proteins were the genetic material Tested the nucleotide composition of several species Variation across different life forms (falsification of tetranulceotide hypothesis) Complementary base pairing