8. Transcription and processing in prokaryotes Flashcards

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1
Q

The central dogma

A

Flow of genetic info from DNA to RNA (transcription) to proteins (translation)

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2
Q

RNA self-replication

A

RNA- dependent RNA polymerase activity in RNA viruses

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3
Q

RNA can be retrotranscribed to DNA

A

Retrotranscriptase activity in retroviruses

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4
Q

Protein + infection

A

= prion

E.g., self-reproducing pathogenic proteins

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5
Q

Primary function of DNA

A

Store genetic info.

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6
Q

Primary function of RNA

A

Transducer DNA messages into protein

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7
Q

Primary functions of proteins

A

Read info. And catalyze reactions as ribosozymes

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8
Q

Transcription and translation in prokaryote vs eukaryotes

A

Prokaryotes can’t regulate RNA and protein synthesis

In eukaryotes nucleus divided transcription and translation=greater control of RNA and protein synthesis

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9
Q

RNA molecules involved in transcription

A
MRNA
SnRNA
TRNA
RRNA
MiRNA
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10
Q

RNA polymerase

A

Highly conserved proteins (so function stays same)

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11
Q

Steps for DNA info transmission to protein:

A
  1. Gene expression
  2. MRNA processing
  3. MRNA transport
  4. MRNA translation
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12
Q

Spiegelman’s experiments

A

Rapid switch from transcription of E.coli genes to phage genes;

phage hijacks cells transcription machinery, but cells then actively destroy messenger

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13
Q

Pulse-chase labeling experiments

A

Prove RNA synthesized in nucleus and then transported to cytoplasm

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14
Q

RNA ribonucleotides

A
  1. Adenosine
  2. Guanosine
  3. Cytidine
  4. Uridine
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15
Q

RNA vs. DNA

A
1. Single vs. double
More options for shape
2. OH groups in position 2
3. Uracil pairs with A during transcription
pairs with A or G when folding 
4. RNA can catalyze reactions
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16
Q

Ribozymes

A

Catalytic RNA

17
Q

mRNA

A

Messenger RNA

Intermediates that carry genetic info from DNA to ribosomes

18
Q

snRNA

A

Small nuclear DNA

Structural components of spliceosomes

19
Q

tRNA

A

Transfer RNA

Adaptors between amino acids and codons in mRNA’s

20
Q

rRNA

A

Ribosomal RNA

Structural and catalytic components of ribosomes

21
Q

miRNA

A

MicroRNA

Short, single-stranded RNA’s that block expression of complementary mRNAs

22
Q

Differences between DNA and RNA

A

Precursors are ribonucleic triphosphate (not deoxy)

Only 1 strand of DNA as template (thus, only 1 direction 5 prime-3 prime)

RNA chains can be initiated de novo (no primer)

Uracil instead of thymine

23
Q

Antisense strand

A

DNA template strand (complementary to RNA)

24
Q

Sense strand

A

DNA nontemplate ‘coding’ strand

Identical to RNA molecule (except U & T)

25
Q

RNA synthesis is catalyze by…

A

RNA polymerases

26
Q

Phosphodiester bond

A

Free nucleotide triphosphate bonds to hydroxyl strand

27
Q

Sense (+) RNA

A

RNA product from template strand is complementary

28
Q

Transcription bubble

A

Region in molecule where strand opens up to allow polymerase

29
Q

Stages of transcription

A
  1. RNA chain initiation (polymerase)
  2. RNA chain elongation
  3. RNA chain termination (nascent RNA molecule)
30
Q

Holoenzyme

A

Initiation of transcription (released after)

31
Q

Sigma factor

A

Initiation of transcription (released after)

32
Q

Stages of initiation (prokaryote)

A

A)RNA polymerase binds to promoter (via holoenzyme)
Formation of phosphodiester bonds between 1st few ribonucleotides
B) initiation signaled by sigma removal

33
Q

+1 site

A

Where transcription starts (between promoter and ATG)

34
Q

UTR

A

Untranslated RNA; untranslatable regions of RNA transcript

5’ UTR before AUG & 3’ UTR after stop codon

35
Q

Termination signals

A

Rho dependent

Rho independent

36
Q

Rho-dependent terminators

A

Require protein factor

Stop codons in mRNA triggers release of attached ribosomes (leaves room for rho to bind)

Rho migrates on RNA and reaches polymerase at the transcription bubble

37
Q

Rho-independent terminators

A

Do not require protein factor

G-C rich stemloop structure upstream of poly-U sequence

Polymerase pauses, backtracks, proceeds, and encounters stem loop

Encourages disassociation of RNA and RNA polymerase—> transcript released