8. Control of Gene Expression Flashcards
What is a gene mutation?
- A change in the base sequence of DNA
- Can arise spontaneously during DNA replication (interphase)
What is a mutagenic agent?
A factor that increases rate of mutation, e.g ultraviolet light, carcinogens (chemicals in tobacco smoke, mustard gas & peroxides) or alpha particles
Explain how a gene mutation can lead to the production of a non-functional protein or enzyme
- Changes sequence of base triplets in DNA so changes sequence of codons on mRNA
- So changes sequence of amino acids in the encoded polypeptide
- So changes position of hydrogen/ionic/disulphide bonds (between amino acids)
- So changes tertiary structure of protein
- Enzymes - active site changes shape so substrate can’t bind, E/S complex can’t form
Describe the different types of gene mutations
Substitution - a base is replaced by a different base in DNA
Addition - 1 or more bases are added to the DNA base sequence
Deletion - 1 or more bases are lost from the DNA base sequence
Duplication - A sequence of DNA bases is repeated/copied
Inversion - A sequence of bases detaches from the DNA sequence, then rejoins at the same position in reverse order
Translocation - A sequence of DNA bases detaches and is inserted at a different location within the same or a different chromosome (can cause significant impacts on gene expression and resulting phenotype)
Explain why not all gene mutations affect the order or amino acids
- Some substitutions change only 1 triplet code/codon which could still code for the same amino acid
> as the genetic code is degenerate (an amino acid can be coded for by more than 1 triplet) - Some occur in introns which do not code for amino acids
Explain why a change in amino acid sequence is not always harmful
- May not change tertiary structure of protein (if position of ionic/hydrogen/disulfide bonds don’t change)
- May positively change the properties of the protein, giving the organism a selective advantage
Explain what is meant by a frameshift
- A frameshift occurs when gene mutations (addition, deletion, duplication or translocation) change the number of bases by any number not divisible by 3
- This shifts the way the genetic code is read, so all DNA triplets/mRNA codons downstream from the mutation change
- The sequence of amino acids encoded changes accordingly and the effects on the polypeptide are significant
- Could lead to the production of a stop codon, resulting in a shorter polypeptide
What are stem cells?
Undifferentiated/unspecialised cells capable of:
1. Dividing by mitosis to replace themselves indefinitely
2. Differentiating into other types of specialised cells
Describe how stem cells become specialised during development
- Stimuli lead to activation of some genes (due to transcription factors)
- So mRNA is transcribed only from these genes and then translated to form proteins
- These proteins modify cells permanently and determine cell structure/function
Describe totipotent cells
- Occur for a limited time in early mammalian embryos
- Can divide AND differentiate into any type of of body cell (including extra-embryonic cells e.g placenta)
Describe pluripotent cells
- Found in mammalian embryos (after first few cell divisions)
- Can divide AND differentiate into most cell types (every cell type in the body except placental cells)
Describe multipotent cells
- Found in mature mammals
- Can divide AND differentiate into a limited number of cell types
e.g multipotent cells in bone marrow can divide and differentiate into different types of blood cell
Describe unipotent cells, using an example
- Found in mature mammals
- Can divide AND differentiate into just 1 cell type
e.g unipotent cells in the heart can divide and differentiate into cardiomyocytes (cardiac muscle cells)
Explain how stem cells can be used in the treatment of human disorders
- Transplanted into patients to divide in unlimited numbers
- Then differentiate into required healthy cells (to replace damaged/faulty cells)
Examples of using stem cells to treat human disorders (2)
- Potential treatment of type 1 diabetes by creating healthy islet cells that produce insulin
- Bone marrow stem cell transplant for SCD/blood cancers
1. Destroy patient’s bone marrow before treatment —> so no faulty cells are produced
2. Transplant stem cells from healthy person —> divide and differentiate into healthy cells
Explain how induced pluripotent stem (iPS) cells are produced
- Obtain adult somatic (body) cells (non-pluripotent cells/fibroblasts) from patient
- Add specific protein transcription factors associated with pluripotency to cells so they express genes associated with pluripotency (reprogramming)
> transcription factors attach to promoter regions of DNA, stimulating or inhibiting transcription - Culture cells to allow them to divide by mitosis
- Once made, iPS cells can divide and differentiate into healthy cells to be transplanted into the same patient
Evaluate the use of stem cells in treating human disorders
FOR:
> can divide and differentiate into required healthy cells, could relieve human suffering by saving lives and improving quality of life
> embryos are often left over from IVF so and would otherwise be destroyed
> iPS cells unlikely to be rejected by patient’s immune system as made with patient’s own cells
> iPS cells can be made without destruction of embryo and adult can give permission
AGAINST:
> ethical issues with embryonic stem cells as obtaining them requires destruction of an embryo and potential life (cannot consent)
> immune system could reject cells and immunosuppressant drugs are required
> cells could divide out of control, leading to formation of tumours/cancer
What are transcription factors?
- proteins which regulate (stimulate or inhibit) transcription of specific target genes in eukaryotes
- by binding to a specific DNA base sequence on a promotor region
Describe how transcription can be regulated using transcription factors
- Transcription factors move from cytoplasm to nucleus
- Bind to DNA at a specific DNA base sequence on a promotor region (before/upstream of target gene)
- This stimulates or inhibits transcription (production of mRNA) of target gene(s), by helping or preventing RNA polymerase binding
Explain how oestrogen affects transcription
- Oestrogen is a lipid-soluble steroid hormone so diffuses into cell across the phospholipid bilayer
- In cytoplasm, oestrogen binds to its receptor, an inactive transcription factor, forming an oestrogen-receptor complex
- This changes the shape of the inactive transcription factor, forming an ACTIVE transcription factor
- The complex diffuses from the cytoplasm into the nucleus
- Then binds to a specific DNA base sequence on the promotor region of a target gene
- Stimulating transcription of target genes forming mRNA by helping RNA polymerase to bind
Explain why oestrogen only affects target cells
Other cells do not have oestrogen receptors
Describe what is meant by epigenetics
- Heritable changes in gene function/expression without changes to the base sequence of DNA
- Caused by changes in the environment (e.g diet, stress, toxins)
Describe what is meant by epigenome
All chemical modification of DNA and histone proteins - methyl groups on DNA and acetyl groups on histones
Summarise the epigenetic control of gene expression in eukaryotes
To inhibit transcription : increased methylation & decreased acetylation
To allow transcription : decreased methylation & increased acetylation
Where DNA is tightly wound around histone proteins = heterochromatin
Where DNA is loosely wound around histone proteins = chromatin
Explain how methylation and acetylation can inhibit transcription
METHYLATION:
1. increased methylation of DNA - methyl groups added to CYTOSINE bases in DNA
2. so nucleosomes (DNA wrapped around histone) pack more tightly together
3. preventing transcription factors and RNA polymerase binding to promotor
ACETYLATION:
1. decreased acetylation of histones increases positive charge of histones
2. so histones bind to DNA (negatively charged) more tightly
3. preventing transcription factors and RNA polymerase binding to promotor
Explain the relevance of epigenetics on disease developments and treatment
- environmental factors (e.g diet, stress, toxins) can lead to epigenetics changes
- these can stimulate/inhibit expression of certain genes that can lead to disease development
> increased methylation or decreased acetylation inhibits transcription
> decreased methylation or increased acetylation stimulates transcription - diagnostic tests can be developed that detect epigenetic changes before symptoms present
- drugs can be developed to reverse these epigenetic changes
What is RNA interference (RNAi)?
- inhibition of translation of mRNA produced from target genes, by RNA molecules e.g siRNA, miRNA
- this inhibits expression of (silencing) a target gene
- happens in eukaryotes and some prokaryotes
Describe the regulation of translation by RNA interference
- Small interfering RNA (siRNA) or micro-RNA (miRNA) is incorporated into/binds to a (argonaut) protein, forming an RNA-induced silencing complex (RISC)
> siRNA synthesised as soluble stranded RNA —> 1 strand incorporated
> miRNA synthesised as a double-stranded hairpin bend of RNA —> both strands incorporated - Single-stranded miRNA/siRNA within RISC binds to target mRNA with a complementary base sequence
- This leads to hydrolysis of mRNA into fragments which are then degraded OR prevents ribosomes binding
- Reducing/preventing translation of target mRNA into protein
Describe how tumours and cancers form
- Mutations in DNA/genes controlling mitosis can lead to uncontrolled cell division
- Tumour formed if this results in mass of abnormal cells
> malignant tumour = cancerous, can spread by metastasis
> benign tumour = non-cancerous
Compare the main characteristics of benign and malignant tumours
BENIGN vs MALIGNANT
usually grow slowly < — > usually grow faster
cells are well differentiated/specialied < — > cells become poorly differentiated/unspecialised
cells have normal, regular nuclei < — > cells have irregular, larger/darker nuclei
well defined borders and often surrounded by a capsule so don’t invade surrounding tissue < — > poorly defined borders and no encapsulated so can invade surrounding tissues
do not spread by metastasis (cell adhesion molecules stick together) < — > spread by metastasis (cells break off and spread to other parts of the body forming secondary tumours due to lack of adhesion molecules)
can normally be removed by surgery and rarely return < — > can normally be removed by surgery combined with radiotherapy/chemotherapy but they often return
Describe the function of tumour suppressor genes
Code for proteins that:
- inhibit/slow cell cycle (e.g if DNA damage detected)
- OR cause self-destruction (apoptosis) of potential tumour cells (e.g if damaged DNA can’t be repaired)
Explain the role of tumour suppressor genes in development of tumours
- Mutation in DNA base sequence —> production of a non-functional protein
> by leading to change in amino acid sequence which changes protein tertiary structure - Decreased histone acetylation OR increased DNA methylation —> prevents production of protein (hypermethylation)
> by preventing binding of RNA polymerase to promotor region, inhibiting transcription - Both lead to uncontrolled cell division (cell division cannot be slowed)
Describe the function of proto-oncogenes
Code for proteins that stimulate cell division (e.g through involvement in signalling pathways that control cell responses to growth factors)