6 Complex Genetic Diseases: Diabetes Flashcards

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1
Q

Q: What causes diabetes? What can it result in? What determines treatment?

A

A: -beta cell dysfunction and/or insulin resistance

  • chronic hyperglycaemia
  • classification
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2
Q

Q: What is type 1 diabetes? When can it present? Treatment?

A

A: -autoimmune system destroys pancreatic beta cells (diminished/ absent endogenous pancreatic beta cell function)

  • any age
  • insulin replacement
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3
Q

Q: What is type 2 diabetes? When can it present? Treatment?

A

A: primary problem= tissues are resistant to insulin action -> causes increased insulin production -> ultimately ‘pancreatic exhaustion’ and reduced secretion

  • usually middle age/older (but increasing in youth) and incidence changes in different ethnic groups
  • initially by diet and exercise and oral hypoglycaemic agents=produce more insulin and increase sensitivity (relies on endogenous insulin production) but insulin eventually
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4
Q

Q: What’s included in a type 1 diabetes management package? (6)

A

A: -insulin injections/pump/islet cell transplant

  • self monitoring blood glucose
  • type 1 diabetes education
  • ketoacidosis prevention
  • carbohydrate counting
  • driving guidance and employment
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5
Q

Q: What’s included in a type 2 diabetes management package? (5)

A

A: -metformin/sulphonylurea GLP1 antagonist

  • SGLT-2 inhibitors
  • DPP4 inhibitors
  • no routine glucose testing
  • type 2 specific education
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6
Q

*Q: What is monogenic diabetes? Difference? 2 types?

A

A: due to a single gene defect

very different to type 1 and 2 ; are born with it as there’s a mutation and you can’t stop its development - not to do with diet, virus or obesity

  • MODY: maturity onset diabetes of the young
  • PND: permanent neonatal diabetes
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7
Q

Q: What is MODY? Most common cause? (2)

A

A: -maturity onset diabetes of the young

  • collection of autosomal dominant monogenic disorders affecting genes involved in beta-cell glucose sensing and insulin secretion
  • HNF-1alpha gene defect which affects a transcription factor involved in promoting transcription of lots of genes involved in ^
  • glucokinase gene defect
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8
Q

Q: What is the role of glucokinase? How does a defect in glucokinase cause MODY? Misdiagnosed as?

A

A: rate limiting step: glucose-> glucose 6 phosphate
-regarded as beta cell glucose sensor as when blood glucose reaches certain point (above 4mmol/L) it kicks in and starts reaction ^

  • mutation makes it work less effectively: increases set-point at which insulin secretion is triggered
  • allows glycolysis and without -> no ATP which means ATP sensitive K+ channels don’t close and don’t cause depolarisation which means insulin can’t be secreted
  • post prandial (period during or after meal) sugars are classically not raised

-T2DM, IFG (impaired fasting glycemia), GDM (Gestational diabetes)

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9
Q

Q: How does a beta cell secrete insulin?

A

A: 1. glucose enters cell via transporter

  1. gluocose-> G6P via hexokinase
  2. glycolysis/krebs cycle -> ATP
  3. high ATP closes ATP sensitive K+ channel
  4. membrane is depolarised
  5. voltage gated Ca2+ channel opens and Ca2+ floods in
  6. insulin is secreted (granules filled with insulin migrate and fuse with cell membrane)
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10
Q

Q: What are HNF-1 alpha? What do mutations in this cause? Absence of HNF-1 alpha? Presentation? Best treatment? why?

A

A: -hepatic nuclear factor 1 alpha = transcription factor normally stimulating insulin production

  • accounts for most cases of MODY in UK
  • insulin production is reduced, but only manifests in adulthood when beta cell function starts to naturally decline (potassium channels don’t close effectively or at all as not enough ATP produced)

-present from birth but doesn’t really appear until teenage years

  • sulphorylureas drug forces K+ channel (used in T2)
  • works well as problem is insulin production and not resistance
  • may eventually require insulin therapy much later (rather than sulph. forever)
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11
Q

Q: What is a mutation in HNF-1 alpha often misdiagnosed as? What happens? People with HNF-1 alpha mutation are at risk of?

A

A: T1DM
-often stop insulin in misdiagnosed patients

-future microvascular and macrovascular complications (as with all diabetes)

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12
Q

Q: How is MODY identified from potential cases of T1 and T2 diabetes mellitus?

A

A: clinical features and biomarkers

can get genetic test but expensive

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13
Q

Q: What do patients with glucokinase mutations often have?

A

A: mild hyperglycaemia (high blood sugar)

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14
Q

Q: What is GCK MODY? Association? Treatment?

A

A: -non progressive mild life long hyperglycaemia

  • not associated with long term complications
  • rarely needs treatment as body’s physiology is working just at a higher glucose set point
  • diagnosis means incorrect treatment can be stopped
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15
Q

Q: What are 2 rare causes of MODY? (5, 2) How do they differ to the 2 common types?

A

A: HNF 4 alpha

  • clinically similar to HNF-1 alpha
  • older age of onset
  • low renal glucose threshold
  • macrosomia (newborn who’s significantly larger than average)
  • transient neonatal hypoglycaemia

HNF-1 beta (RCAD)

  • renal cysts and diabetes
  • genital tract mutations

both are MODY that can also present with multisystemic features
-unlike the most common 2 causes which present like diabetes

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16
Q

Q: What is permanent neonatal diabetes? When does it present? 4 causes?

A

A: form of monogenic diabetes (v rare)
-diabetes present in first 6 months of life (virtually impossible for it to be T1)

genetic defect resulting from mutations in:

  • KCNJ11 30%
  • ABCC8 20% (this and ^ affect ATP sensitive K+ channel)
  • INS (insulin gene) 20%
  • KCNJ11 & INS 90% spontaneous
17
Q

Q: When is T1DM rarely observed?

A

A: first 6 months of life

when T1 kicks in, percentage expression of HLA molecules is high (above controls)-> tells us that what is happening is not immune driven -> makes us think that it’s something else eg genetic

18
Q

Q: What makes the ATP sensitive K+ channel?

A

A: 2 subunits

  • Kir 6.2 (coded by KCNJ11 gene)
  • Sur 1 (coded by ABCC8 gene)
19
Q

Q: Describe sulphorylurea action.

A

A: take in tablet form

bind to Sur 1 subunit of ATP sensitive K+ channel -> normal physiology is restored

20
Q

Q: What happens when PND is correctly diagnosed? Result?

A

A: can come off wrong treatment of insulin

-neurological features (DEND syndrome) can improve

(less chance of transfer to sulphonylureas with longer duration and if on insulin for a long time previously, will be difficult to come off it)

21
Q

Q: What does genetic testing involve? (3,2)

A

A: genetic counselling

  • pros and cons
  • impact on treatment
  • impact on family members

blood test (DNA sample)

  • next generation sequencing technology (can do all genes in one go if unsure what you’re looking for eg if pheno is a little mixed)
  • confirmation via sanger sequencing (one gene)
22
Q

Q: Compare Sanger and Next Generation sequencing:

approach.
use.
pros.
cons.

A

A: s- 1 reaction to sequence all exons of a single gene
ng- 1 reaction to sequence multiple genes on a single sample

s-identification of unknown mutations by sequencing of whole genes
ng- analysis of unidentified mutations in multiple genes for heterogenous phenotypes

s-high precision
ng- simultaneous genes, cost-effective

s- expensive, time consuming, one gene at a time, poorly automated
ng- high coverage needed for accuracy, abundance of sequencing data

23
Q

Q: What’s the issue with gene variants and disease?

A

A: don’t know if a particular genetic change (variant) is actually causing a disease-> therefore assign pathogenicity to that variant

24
Q

Q: How can variants be classified in terms of pathogenicity? (5) Issue?

A

A: -not pathogenic

  • unlikely to be pathogenic
  • variant of unknown significance
  • likely pathogenic
  • clearly pathogenic

can be challenging to assign

25
Q

*Q: How is mitochondrial diabetes inherited? 2 syndromes? Onset? (4)

A

A: maternally (underdiagnosed)

  • MIDD = maternally inherited diabetes and deafness (mutation in A3243G)
  • MELAS = myopathy, encephalopathyt, lactic acidosis, stroke like episodes -> can get diabetes with it too even though it’s not listed
  • young onset of sensorineural deafness
  • high lactate
  • muscle aches
  • short stature
26
Q

Q: What is heteroplasmy? important factor? In relation to mitochondria?

A

A: variable phenotype // presence of more than one type of organellar genome within a cell or individual. It is an important factor in considering the severity of mitochondrial diseases

where some mito in cells are mutated and some not

27
Q

Q: What is polygenic diabetes?

A

A: (most common form) compilation of genetic changes that increase predisposition to developing T1 or T2 DM

has to be a second hit to develop diabetes either from environment or lifestyle (just because you have a genetic mutation, doesn’t mean you’ll get diabetes

28
Q

*Q: Where did the genetic understanding of T1 and T2 diabetes come from?

A

A: genome wide association studies (GWAS)

take many people with condition and many without -> sequence entire genome of all -> plot -> compare

see if disease is statistically associated with single nucleotide polymorphism (SNP) at a particular locus

29
Q

Q: Using GWAS in T1DM, which locus mutation put you at greatest risk of developing T1?

A

A: HLA, involved in immune response (if you get particular HLA mutations, can be 6.5 more susceptible to develop T1 than if you didn’t)

30
Q

Q: Using GWAS in T2DM, how many loci were associated with increased risk? Most affect? Effect size? Which mutation has largest?

A

A: -around 90

  • beta cell function rather than insulin resistance
  • small (collectively all SNPs account for 6% of T2 DM risk observed)
  • TCF7L2 (odds ratio of 1.4)
31
Q

Q: Why is there a T2 DM epidemic? (3)

A

A: not accounted for by genes (maybe leads to genetic predisposition)

-clear interaction with lifestyle

but possible that we have’t studied enough people to know

32
Q

Q: What are Genomic Copy Number Variation?

A

A: CNVs= changes in dose in genetic information

deletions, duplications, insertations present in the genome // ranges from few bp to >1Mb

33
Q

Q: What’s the link betweem CNVs and diabetes? Other?

A

A: tried to connect but not much evidence for it

most changes in diabetes risks = due to SNPs

34
Q

Q: Draw diagram representing the relationship between the environment and genes and diabetes?

A

A: polygenic diabetes (common) —->single gene(dom)->single gene (rec)

low genetic risk but develop due to lifestyle -> (middle) not that unhealthy but develop with aid of genetic predisposition -> far right

35
Q

Q: What does ‘precision medicine’ mean? 2 examples.

A

A: using genetic information to provide targeted therapy

  • using sulphonylureas in HNF1A MODY and PND
  • pharmacogenetics- SNPs might predict drug response / side effects (starting to happen in diabetes)