3. Medicines Design Flashcards
Describe stages of Carcinoma of the prostate
- Normal prostatic epithelium
- Low-grade prostactic intraepithelial neoplasia
- High-grade prostactic intraepithelial neoplasia
- Metastatic prostate cancer
- Androgen-independent cancer
Statistics about Prostate (JUST READ)
- 1 in 8 in the UK will get prostate cancer at some point in their lives
- Your risk increases with age (over 50 yrs old)
- Family history and genes
- Black men are more likely to get prostate cancer than other men
What are the options for treatment of Prostate Cancer?
- Watchful waiting
- slow-growing tumours in frail men - Active surveillance
- small tumour confined to prostate - Surgery
- frequently used but major side-effects - Chemotherapy
- hormone-dependent tumours - Chemotherapy
- hormone-independent tumours - High-intensity focussed ultrasound (HIFU)
- de-bulking - External beam radiotherapy
- small tumours confined to prostate - Permanent seed brachytherapy
- tumours confined to prostate
How does Testosterone promote proliferation?
- Testosterone (T) binds to the androgen receptor (AR)
- This causes a conformational change in the AR
- This complex translocates to the nucleus, where it signals for proliferation
Name drugs that bind to androgen receptor
Flutamide
- Bacteriostatic, later found to have anti-androgenic activity. Now little used for prostate cancer. Hepatotoxic
Nilutamide
- Developed from flutamide, Less hepatotoxic
Bicalutamide
- Binding mode to AR known, introduced 1995. Widely used
Enzalutamide
- Approved in 2012. Now supplanting bicalutamide. Rare CNS toxicity
How does Bicalutamide act at androgen receptor
- Bicalutamide (Bic) binds to the androgen receptor (AR) but does not cause conformatonal change
- Testosterone is blocked from binding
- The Bic-AR complex is internalised but cannot translocate to the nucleus
- Bicalutamide has some agonist activity, especially at mutant AR
How does Enzalutamide act at androgen receptor?
- Enzalutamide (Enz) binds to the androgen receptor (AR) but does not cause conformational change
- Testosterone is blocked from binding
- The Enz-AR complex is internalised but cannot translocate to the nucleus
- Enzalutamide has no agonist activity
How does Testosterone bind to androgen receptor?
How does Bicalutamide bind to androgen receptor?
Testosterone binds through…
- H-bonds
- Hydrophobic interactions
Bicalutamide binds through…
- H-bond to Arg752, Asn705
- ‘does not’ H-bond to Thr877
- hydrophobic side-pocket
Describe biosynthesis of testosterone
- Cholesterol
—> Pregnenolone
—> Progesterone by 3beta-HSD (hydroxysteroid dehydrogenase)
—> 17a-OH-Progesterone by 17a-Hydroxylase
—> Androstenedione by 17,20 Lyase
—> Testosterone by 17b-HSD (hydroxysteroid dehydrogenase)
What are the drugs that inhibit CYP17A1?
Ketoconazole
- non-specific inhibitor of CYPs, Antifungal
Abiraterone
- selective inhibitor of CYP17A1
Abiraterone acetate
- prodrug of abiraterone
How does Prosgesterone bind to CYP17A1?
C=O forms H-bond to Asn202
Hydrocarbon part of steroid binds to hydrophobic hydrophobic side-chains
Anti-androgens Summary (JUST READ)
- Many early prostate cancers require testosterone to grow
: Androgen-dependent - Advanced prostate cancers lose this dependence
: Androgen-independent - Androgen-dependent cancers can be treated by blocking the androgen receptor
: Flutamide, Nilutamide, Bicalutamide, Enzalutamide - Binding to AR through H-bonds & hydrophobic interactions and in side-pocket
- Androgen-dependent cancers can be treated by inhibiting the biosynthesis of Testosterone in the testes and in the adrenals
: inhibition of CYP17A1
: Ketoconazole, Abiraterone, Abiraterone acetate - Binding to CYP17A1 through ligation to Fe, H-bonds & hydrophobic interactions; complementarity of shape; prodrug
20 Amino Acids Summary (JUST READ)
Alanine (Ala)
- Small, Non-polar, No H-bonds, Neutral, Chemically unreactive
Arginine (Arg)
- Medium, Polar, H-bond donor, Basic[cation], weak electrophile/nucleophile
Asparagine (Asn)
- Small, Polar, H-bond donor & acceptor, Neutral, Chemically unreactive
Aspartic acid (Asp) - Small, Polar, H-bond acceptor, Acidic[anion], Nucleophile
Cysteine (Cys)
- Small, Non-polar, No H-bonds, Weak acid, Powerful nucleophile, reducing agent, forms radicals readily
- Disulfide bridges in proteins
: the only covalent link in tertiary structure of proteins
Glutamine (Gln)
- Medium, Polar, H-bond donor & acceptor, Neutral, Chemically unreactive
Glutamic acid (Glu) - Medium, Polar, H-bond acceptor, Acidic[anion], Nucleophile
Glycine (Gly)
- Small, Non-polar, No H-bonds, Neutral, Chemically unreactive
Histidine (His)
- Large, Polar, H-bond donor & acceptor, Weak base[cation], Nucleophile
Isoleucine (Ile)
- Medium, Non-polar, No- H-bonds, Neutral, Chemically unreactive
Leucine (Leu)
- Medium, Non-polar, No H-bonds, Neutral, Chemically unreactive
Lysine (Lys)
- Large, Polar, H-bond donor, Basic[cation], Nucleophile
Methionine (Met)
- Medium, Non-polar, No H-bonds, Neutral, Weak nucleophile
Phenylalanine (Phe)
- Large, Non-polar, No H-bonds, Neutral, Chemically unreactive, Aromatic (pi-stacking)
Proline (Pro)
- Medium, Non-polar, No H-bonds, Neutral, Chemically unreactive, Cyclic (secondary amine)
Serine (Ser)
- Small, Polar, H-bond donor & acceptor, Neutral, Nucleophile
Phosphoserine
- Medium, Polar, H-bond acceptor, Acidic, Anion
Threonine (Thr)
- Medium, Polar, H-bond donor & acceptor, Neutral, Nucleophile
Phosphothreonine
- Medium, Polar, H-bond acceptor, Acidic, Anion
Tryptophan (Trp)
- Large, Non-polar, H-bond donor, Neutral, Chemically unreactive, Aromatic
Tyrosine (Tyr)
- Large, Polar, H-bond donor, Weak acid, Nucleophile, Aromatic
Phosphotyrosine
- Medium, Polar, H-bond acceptor, Acidic, Anion
Valine (Val)
- Medium, Non-polar, No H-bonds, Neutral, Chemically unreactive
Describe Antimetabolites
- Antimetabolites kill (cancer) cells by inhibiting a critical cellular process
- Antimetabolites are usually inhibitors of enzymes
- Biosynthesis of DNA is essential to proliferation of tumour cells
: therefore, most antimetabolites are inhibitors of critical enzymes involved in DNA biosynthesis
What are the 4 main groups of antimetabolite drugs?
Folate ‘antagonists’
- e.g Methotrexate, non-classical lipophilic antifolates, pemetrexed, raltitrexed
Pyrimidine ‘antagonists’
- e.g 5-Fluorouracil (5-FU), fluorodeoxyuridine (FdURD), azacytidine
Purine ‘antagonists’
- e.g 6-Mercaptopurine, thioguanine, tiazofurin
Sugar-modified nucleosides
- e.g Cytarabine (Ara-C), fludarabine, gemicitibine
Describe analogues of folate antagonists regarding its action of antimetabolites
Analogue of dihydrofolate
- binds to DHFR (dihydrofolate reductase) at folate-binding site
Very potent competitive inhibitor of DHFR
Too polar for passive diffusion into cells
- taken up through reduced folate carrier (RFC)
Must be polyglutamylated to be retained in cells
Often used in high-dose regimen, with leucovorin (folate) rescue of normal cells
Widely used drug against many cancer types
Describe actions of lipophilic antifolates
- Enter cells by passive diffusion
: don’t need RFC (Reduced Folate Carrier)
What does Azacytidine do?
- Weak inhibitor of TS (Thymidylate Synthase)
- Phosphorylated to form azacytidine triphosphate, then incorporated into RNA
- Mimics C in RNA but unstable and decomposes, causing damage to RNA
- Inhibits DNA methyltransferases (epigenetic effects)
Describe inhibition of biosynthesis of purine nucleosides
- TAD (from Tiazofurin) inhibits by binding at NAD+ binding site
- Thio-IMP (from 6-MP) and Thio-GMP (from 6-TG) inhibit by binding at purine-binding site
Give an examples of Sugar-modified nucleoside
Cytarabien (Ara-C)
- Converted to triphosphate
- Triphosphate inhibits DNA polymerases as analogue of dCTP
- Some incorporation into DNA, making DNA non-functional
Fludarabine
- Converted to triphosphate
- Triphoshate inhibits DNA polymerases as analogue of dATP
Gemcitabine
- Converted very efficiently to triphoshate F2dCTP
- Triphosphate F2dCTP inhibits DNA polymerases as analogue of dCTP
- 100x more potent than Ara-C
REMEMBER
- dCTP is a feedback inhibitor of dCK, so depletion of dCTP actiavtes dCK
- Activation of dCK increases formation of F2dCMP from gemcitabine
What are Microtubules and how is it regarded with cancer therapy?
- responsible for maintaining the structure of the cell and for seperating the sets of chromosomes during mitosis
- interfering with the formation and remodelling of microtubules inhibits mitosis and, therefore, proliferation of cancer cells
Describe structure of Microtubules
- Microtubules are assemblies of tubulin dimers
- Each tubulin dimer has one alpha and one beta subunit
How does Mitotic spindle poison interfere with Microtubules?
- Microtubules are in dynamic equilibrium with individual tubulin dimers
- Mitotic spindle poisons interfere with this dynamic equilibrium
What are Vinca Alkaloids?
- Vinblastine binds to + end of microtubule, capping it and preventing new tubulin dimers from adding
- Vinca alkaloids bind strongly to individual tubulin dimers, causing conformational change and preventing binding to microtubules
- Individual complexes of vinca alkaloid and tubulin dimers condense into paracrystalline aggregates
- Le Chatelier’s Principle applies
: microtubules shrink