24.1 Two Prokaryotic Domains Flashcards

1
Q

What does it mean for prokaryotes to be paraphyletic?

A

it excludes some descendants of the last common ancestor of all living organisms, namely eukaryotes

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2
Q

What are the 2 domains of life characterized by prokaryotic cell structure?

A

Bacteria and Archaea

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3
Q

What makes up for Bacteria and Archaea’s lack in complexity of cell structure?

A

their dazzling metabolic diversity

these domains underpin the efficient operation of ecosystems on our planet

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4
Q

How were bacteria first distinguished?

A

because of their small size, they were long dismissed as primitive organisms, distinguished mostly by the eukaryotic features they lack:

  • no membrane-bounded nuclei
  • no energy-producing organelles
  • no sex
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5
Q

Why were the first point of views of bacteria misleading?

A

bacteria are the diverse and remarkably successful products of nearly 4 billion years of evolution

today, bacterial cells outnumber eukaryotic cells by several orders of magnitude

even in your body, bacteria equal or outnumber human cells

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6
Q

Describe the contents of a bacterial cell.

A
  • DNA is present in a single circular chromosome folded into many loops (in contrast to multiple linear chromosomes characteristic of eukaryotic cells)
  • many carry additional DNA in the form of plasmids, small circles of DNA that replicate independently of the cell’s circular chromosome
  • have plasma membrane and cell wall

*figure 24.1 textbook

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7
Q

Is plasmid DNA essential for cell survival?

A

in general, no, but it may contain genes that have adaptive value under specific environmental conditions

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8
Q

Why does transcribed mRNA in bacterial cells immediately translate into proteins by ribosomes?

A

because no nuclear membrane separates DNA from the surrounding cytoplasm

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9
Q

How are cells processes, such as metabolism, carried out by bacterial cells?

A

by proteins that float freely in the cytoplasm or are embedded in the plasma membrane

few bacteria (notably the photosynthetic bacteria) contain internal membranes similar to those found in chloroplasts and mitochondria

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10
Q

Where do light-triggered reactions of photosynthetic bacteria take place?

A

in association with membranes distributed within the cytoplasm

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11
Q

What is peptidoglycan?

A

a complex polymer of sugars and amino acids

it makes up a cell wall that provides structural support for bacteria
- some bacteria have thick walls made with multiple layers, some have thin walls surrounded by an outer layer of lipids

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12
Q

What was believed to be missing in bacterial cells for many years?

A

it was believed that bacteria lacked the cytoskeletal framework that organizes cytoplasm in eukaryotic

more recently, careful studies have shown that bacteria do possess an internal scaffolding of proteins that plays an important role in determining the shape, polarity, and other spatial properties of bacterial cells

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13
Q

Describe the size of bacterial cells.

A
  • tiny
  • 200-300 nanometers (nm) in diameter
  • relatively few are more than 1-2 micrometers long
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14
Q

Why are bacteria so small?

A

diffusion limits cell size in bacteria

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15
Q

Describe diffusion.

A
  • more molecules move from a region with a higher concentration of the molecule to lower concentration of molecule than move in the opposite direction
  • net movement stops only when the two regions achieve equal concentrations of the molecule, but diffusion continues
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16
Q

Give examples of bacterial diffusion.

A
  • photosynthetic bacteria gain the CO2 they need by the diffusion of CO2 from the environment into the cell
  • respiring bacteria take in small organic molecules and oxygen by diffusion
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17
Q

Why does diffusion explain why bacterial cells tend to be small?

A

small cells have more SA in proportion to its V, and the interior parts of a small cell are closer to the surrounding environment than those of a larger cell

as a result, slowly diffusing molecules do not have to travel far to reach every part of a small cell’s interior

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18
Q

What is the surface area of a spherical cell?

A

the area available for taking up molecules from the environment

it increases as the square of the radius

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19
Q

What is the volume of a spherical cell?

A

the amount of cytoplasm that is supported by diffusion

it increases as the cube of the radius

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20
Q

What happens as cell size increases?

A

it becomes harder to supply the cell with the materials needed for growth

for this reason, most bacterial cells are tiny spheres, rods, spirals, or filaments - small enough for molecules to diffuse into the cell’s interior

*figure 24.2 textbook

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21
Q

What is the largest known bacteria?

A

thiomargarita namibiensis

it lives in oxygen-poor sediments off the coast of southwestrn Africa

its total volume is ~100 million times large than E. coli

*figure 24.1 textbook

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22
Q

How does T. namibiensis “cheat”?

A

98% of its volume is taken up by a large vacuole, so the metabolically active cytoplasm is restricted to a thin film around the cell’s periphery

thus, the distance through which nutrients move by diffusion is only a few micrometers, as in many other bacteria

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23
Q

What are myxobacteria?

A

unusual bacteria that aggregate to form multicellular reproductive structures that are composed of several distinct cell types

24
Q

What does horizontal gene transfer promote?

A

genetic diversity in bacteria

25
Q

Why are bacterial genomes generally smaller than the genomes of eukaryotes?

A

in part because bacteria lack the large stretches of noncoding DNA characteristics of eukaryotic chromosomes

26
Q

What benefits does the streamlining of the bacterial genome confer?

A
  • bacteria can reproduce rapidly when the nutrients required for their growth are available
  • bacteria replicate their DNA from only one or a small number of initiation sites, so a smaller genome can be duplicated more quickly
27
Q

What processes do bacteria not undergo?

A

do not undergo meiotic cell division and cell fusion

they lack the sexual processes characteristic of eukaryotic organisms

28
Q

Describe an example of how bacterial populations display remarkable genetic diversity.

A

Pseudomonas aeruginosa, a common disease-causing organism, may differ in genome size by nearly a factor of 2 (3.7 million base pairs compared to 7.1 million base pairs), yet these strains are quite similar in function

29
Q

How does variation arise in eukaryotic organisms? Bacteria?

A

in eukaryotic organisms, genes generally pass from parent to offspring

bacteria inherit most of their genes from parental cells, but they can also obtain new genes from distant relatives by horizontal gene transfer

30
Q

What is horizontal gene transfer?

A

transfer of genetic material between organisms that are not pare and offspring

this process is a major source of genetic diversity in bacteria

31
Q

What are the 3 ways of horizontal gene transfer that DNA can move from one bacterial cell into another independently of cell division

A

conjugation
transformation
transduction

*figure 24.4 textbook

32
Q

Describe the process of conjugation.

A

the direct cell-to-cell transfer of DNA, usually in the form of a plasmid, spreading novel genes throughout a population

  • bacteria synthesize thin strands of membrane-bound cytoplasm called pili that connect them to other cells
  • after joining to a second cell, the pilus contracts, drawing the two cells close together
  • a pore-like opening develops where the two cells are in close contact, providing a migration route for the direct cell-to-cell transfer of DNA

ie. genes that confer resistance to antibiotics

33
Q

Describe the process of transformation.

A

genes are transferred from one cell to another without any direct bridge between cells

conversion of cells from one state to another, as from nonvirulent to virulent, when DNA released to the environment by cell breakdown is taken up by recipient cells

in recombinant DNA technology, the introduction of recombinant DNA into a recipient cell

34
Q

When was the process of transformation discovered?

A

when experiments showed that harmless strains of bacteria causing pneumonia could be transformed into virulent strains by exposure to media containing dead cells of disease-causing strains

scientists reasoned that the transformation occurred because the living bacteria were taking up some substance from dead cells, this substance was later show to be DNA

35
Q

Describe the process of transduction.

A

horizontal gene transfer by means of viruses

  • viruses that invade bacterial cells sometimes integrate their DNA into the host’s bacterial DNA
  • this viral DNA persists within the cells as they grow and divide
  • before the virus leaves the cell to infect others, the viral DNA removes itself from the bacterial genome and is packaged in a protein capsule
  • the complete virus particle can then be released into the environment
  • this excision is not always precise, and sometimes genetic material from the bacterial host is incorporated into the virus
  • viruses released from their host cell go on to infect others, bringing host-derived genes with them
  • widely used in lab to introduce novel genes into bacteria for medical research
36
Q

What does horizontal gene transfer allow bacterial cells to do?

A

gain beneficial genes from organisms distributed throughout the bacterial domain and beyond

  • bacteria everywhere are constantly reshaping their genomes
37
Q

What are bacteria unable to do?

A

unable to generate genetic diversity by sexual recombination

instead, they have their own highly efficient mechanisms for adding and subtracting genes that permit them to evolve and adapt rapidly to local conditions

38
Q

What is the most widely discussed and worrisome manifestation of horizontal gene transfer?

A

the rapid spread of antibiotic resistance among pathogenic bacteria

39
Q

How did it come about for Archaea to form a second prokaryotic domain?

A

based on comparisons of RNA molecules from the small subunits of ribosomes (and later, comparisons of the genes for these RNAs), George Fox and Carl Woese introduced the two distinct groups that are as different from each other as either is from eukaryotes

40
Q

What are the similarities between Bacteria and Archaea?

A

prokaryotic

  • no membrane-bounded nucleus
  • genes are arrayed along a single circular chromosome
  • cell size is limited by diffusion
  • genetic diversity is promoted by horizontal gene transfer
41
Q

What are the differences between Bacteria and Archaea? (4)

A
  • membranes made from lipids that differ from the fatty acids found in bacterial and eukaryotic membranes
  • show diversity of molecules in their cell walls, but none has the peptidoglycan characteristic of bacteria or the cellulose or chitin found in most cell walls
  • transcription in archaeons employs RNA polymerase and ribosomes more similar to those of eukaryotes than the components of bacteria
  • many antibiotics that target protein synthesis in bacteria are ineffective against archaeons, suggesting fundamental difference in translation as well
42
Q

Describe some examples of the unusual microorganisms first identified as Archaea.

A

have unusual physiological properties or inhabit extreme environments

  • some live in acidic mine water at pH 1 or less
  • others live in water salty enough to precipitate Na Cl, or in deep-sea hydrothermal vents where temperatures can exceed 100 degrees
43
Q

What do we now know about Archaeons?

A

live under less extreme conditions in soils, lakes, and the seas

may be the most abundant organisms throughout much of the ocean

44
Q

Compare the principle differences among Archaea, Bacteria, and Eukarya.

A

table 24.1 textbook

45
Q

Do Archaea, Bacteria, and Eukarya have this characteristic?

  • cell contains a nucleus and other membrane-bound organelles
A

Archaea: no
Bacteria: no
Eukarya: yes

46
Q

Do Archaea, Bacteria, and Eukarya have this characteristic?

  • DNA occurs in a circular form
A

Archaea: yes
Bacteria: yes
Eukarya: no (DNA is linear)

47
Q

What are Archaea, Bacteria, and Eukarya’s ribosome sizes?

A

Archaea: 70S
Bacteria: 70S
Eukarya: 80S

48
Q

Do Archaea, Bacteria, and Eukarya have this characteristic?

  • membrane lipids are ester-linked
A

Archaea: no (are ether-linked)
Bacteria: yes
Eukarya: yes

49
Q

Do Archaea, Bacteria, and Eukarya have this characteristic?

  • photosynthesis with chlorophyll
A

Archaea: no
Bacteria: yes
Eukarya: yes

50
Q

Do Archaea, Bacteria, and Eukarya have this characteristic?

  • capable of growth at temperatures greater than 80 degrees
A

Archaea: yes
Bacteria: yes
Eukarya: no

51
Q

Do Archaea, Bacteria, and Eukarya have this characteristic?

  • histone proteins present in cell
A

Archaea: yes
Bacteria: no
Eukarya: yes

52
Q

Do Archaea, Bacteria, and Eukarya have this characteristic?

  • operons present in DNA
A

Archaea: yes
Bacteria: yes
Eukarya: no

53
Q

Do Archaea, Bacteria, and Eukarya have this characteristic?

  • introns present in most genes
A

Archaea: no
Bacteria: no
Eukarya: yes

54
Q

Do Archaea, Bacteria, and Eukarya have this characteristic?

  • capable of methanogenesis
A

Archaea: yes
Bacteria: yes
Eukarya: no

55
Q

Do Archaea, Bacteria, and Eukarya have this characteristic?

  • sensitive to the antibiotics chloramphenicol, kanamycin, and streptomycin
A

Archaea: no
Bacteria: yes
Eukarya: no

56
Q

Do Archaea, Bacteria, and Eukarya have this characteristic?

  • capable of nitrogen fixation
A

Archaea: yes
Bacteria: yes
Eukarya: no

57
Q

Do Archaea, Bacteria, and Eukarya have this characteristic?

  • capable of chemoautotrophy
A

Archaea: yes
Bacteria: yes
Eukarya: no