24 protein synthesis = translation Flashcards

1
Q

what is the structure and function of the ribosome?

A

rRNA + protein. form a large complex with enzyme sites for protein synthesis

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2
Q

what is the function of tRNA?

A

adapters that convert DNA info to protein

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3
Q

what happens to the third base of a codon when binding to tRNA?

A

it can vary: it has “wobble” WOMP WOMP WOMP. advantage for speed and energy, fewer tRNA molecules than codons.

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4
Q

four fun facts about the triplet code:

A

degenerate, unambiguous, non-overlapping, universal

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5
Q

tell me about the open reading frame (ORF)

A

it’s the reading frame in which the codon triplets are read. any sequence of bases has 3 possible frames, the other two frames are usually non-functional and full of STOP codons

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6
Q

what’s the start codon?

A

AUG

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7
Q

what are the stop codons?

A

UAA, UAG, UGA

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8
Q

how big is the large subunit and what is it composed of?

A

50S, 36 proteins, 2 rRNA (5S, 23S)

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9
Q

how big is the small subunit and what is it composed of?

A

30S, 21 proteins, 1 rRNA (16S)

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10
Q

give me some fun facts about ribosomes.

A

15,000/cell, 1/4 of dry weight of cell, 20nm diameter

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11
Q

what does the ribosome do exactly?

A

it’s a ribozyme: rRNA has catalytic and structural function and forms major site of interaction b/w 50S and 30S

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12
Q

what sits at the interface between the two ribosomal subunits?

A

predominantly rRNA

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13
Q

what is splicing?

A

snRNA (small nuclear RNA) ribozyme activity catalyzes splicing of RNA to remove introns. in eukaryotes this is carried out by the splisosome

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14
Q

what does peptidyl transferase do?

A

rRNA ribozyme activity catalyzes peptide bond formation in protein synthesis. highly conserved base sequence.

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15
Q

how many different tRNAs do different species have?

A

40-60

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16
Q

how long are the different tRNAs usually?

A

73-93 nucleotides

17
Q

what are the four arms of the tRNA molecule?

A

D arm, anticodon arm, TψC arm, amino acid stem, variable or extra arm

18
Q

what is the 3’ end of the tRNA?

A

amino acid acceptor, modified to CCA

19
Q

what are the modified bases in tRNA?

A

D = dihydrouridine, T=ribothymidine, ψ=pseudouridine

20
Q

how does the tRNA fold?

A

a cloverleaf fold, forms a complex 3D structure

21
Q

what is the relationship between mRNA codons and tRNA anticodons?

A

they are anti-parallel and complementary

22
Q

what are the four steps of protein synthesis?

A

activation of AAs, initiation, elongation, termination

23
Q

what happens in activation of amino acids?

A

the amino acid joins to the tRNAs with the correct codon (using aminoacyl-tRNA synthetase). the amino acid is ‘charged’ with its tRNA so it can form a peptide bond

24
Q

what happens in initiaton?

A

assembly of ribosome with first AA-tRNA with initiation factor and GTP

25
Q

what happens in elongation?

A

formation of peptide bond and translocation (elongation factors and GTP)

26
Q

what happens in termination?

A

the polypeptide is released (using the stop codon, release factors)

27
Q

why does the AA activate with tRNA?

A

high energy bond between AA and corresponding tRNA - provides energy required for peptide bond formaiton. creates a relation b/w AA and codon. two step reaction.

28
Q

what’s the enzyme involved in activation?

A

step 1: aminoacyl-tRNA synthetase. step 2: 20 enzymes = one for each AA

29
Q

what is the first step in AA activation?

A

ATP -> PPi is used. AA converted to enzyme bound-aminoacyl~AMP

30
Q

what is the second step in AA activation?

A

enzymebound-aminoacyl~AMP + tRNA(AA) -> aminoacyl~tRNA

31
Q

how are AAs linked?

A

through their carboxyl groups to the 3’OH of the ribose at the 3’ end of the tRNA

32
Q

what are the bases at the 3’ end of the tRNA?

A

CCA