18 - Pharmacogenomics Flashcards

1
Q

Pharmacogenomics

A
  • Study of how a person’s genetic make up affects their response to a drug
  • Example of precision medicine
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
2
Q

Genetic Variation

A

Genetic variation in coding regions of genes determines drug response

How well did you know this?
1
Not at all
2
3
4
5
Perfectly
3
Q

Examples of variability in drug response

A
  • Genetics
  • Gender
  • Obesity
  • Race
  • Pregnancy
  • Age
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
4
Q

Benefits of pharmacogenomics

A
  • Predicting drug over dose
  • Preventing adverse drug reactions
  • Improving efficacy
  • Predicting the activation of pro drugs
  • Developing targeted drugs for cancer therapy
  • Enabling drug discovery/development
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
5
Q

Four main processes involved in drug pharmacokinetics

A
  • Absorption
  • Distribution
  • Metabolism
  • Excretion
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
6
Q

Drug receptors

A
  • DNA variants determines the type of receptors, how many, and efficiency
  • As a results, a higher or lower amount of the drug is needed or a different drug
  • Many receptors = strong response, no receptors = no response
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
7
Q

Breast cancer and T-DM1

A
  • Some breast cancers make too many HER2 receptors, which helps the cancer develop and spread
  • T-DM1 (antibody-drug conjugate) used to treat these cancers and works by attaching to HER2 receptors on cancerous cells and killing them
  • Tumour tissue is tested to determine if T-DM1 is the right treatment
  • If there is high number of HER2, T-DM1 can be used
  • IF tumour is HER2 negative, T-DM1 will not work
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
8
Q

Drug uptake

A
  • Some drugs need to be actively taken into cells
  • DNA variants can affect uptake of certain drugs
  • DNA variants can affect how quickly some drugs are removed from the cells. If drugs are removed too quickly, they might not have time to act.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
9
Q

Statins and muscle problems

A
  • Statins act in liver to lower cholesterol
  • To work must first be taken into the liver cells.
  • Statins are transported by a protein made by the SLCO1B1 gene.
  • A DNA variant causes reduced simvastatin to be absorbed by cells.
  • When taken at high doses, simvastatin can build up causing muscle weakness and pain.
  • Genetic testing the SLCO1B1 gene can be done to determine if simvastatin is the best statin and what dose would work best.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
10
Q

Drug breakdown

A
  • DNA variants can affect the speed of drug breakdown
  • If the drug is metabolised more quickly than most people, a higher dose may be required (or different drug)
  • If drug is metabolised slower, smaller dose may be required
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
11
Q

Depression and amitriptyline

A
  • The breakdown of the antidepressant drug amitriptyline is influenced by two genes CYP2D6 and CYP2C19.
  • Genetic testing for these genes can help decide what dose of the drug is needed.
  • Fast metabolisers will need a higher dose, or a different drug.
  • Slow metabolizers will need a smaller dose or a different drug to avoid a bad
    reaction.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
12
Q

Cytochrome Oxidase P450 enzymes

A
  • 57 different genes, 17 different families
  • CYP1, CYP2, CYP3 are primarily involved in drug metabolism
  • 6 metabolise 90% of drugs. Two most significant enzymes are CYP3A4 and CYP2D6
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
13
Q

Drug dose

A
  • Determines both efficacy and safety of a drug
  • Genetic factors play a role
  • EG warfarin
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
14
Q

Warfarin drug dose

A
  • SNPs in CYP2C9 (enzyme metabolizing warfarin) & VKORC1 (enzyme inhibited by warfarin) determine the dose requirement.
  • Loss-of-function SNPs in either or both genes cause reduced enzyme activity and a lower warfarin doses is required, to avoid overexposure, and achieve therapeutic anticoagulation.
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
15
Q

Targeted Drug Development

A
  • Some diseases are due to specific mutations in a gene
  • The protein may not work correctly or may not be made at all
  • Drugs can be created based on how the mutation affects the protein (drug only works for specific mutation)
How well did you know this?
1
Not at all
2
3
4
5
Perfectly
16
Q

Example of targeted drug development

A

Ivacaftor, trialled in patients carrying G551D mutation, led to a 55% reduction in the pulmonary exacerbation rateof cystitic fibrosis

17
Q

Warfarin

A
  • Most common oral anticoagulant
  • 30-35% of the variability in warfarin response is due to genetic variants
  • Metabolism of warfarin is dependent on CYP2C92 and CYP2C93 have been associated with over-anticoagulation and an increased risk of bleeds
18
Q

TPMT

A
  • Maintenance dose of 6MP given
  • Severe sepsis (treated with antibotics)
  • Found homozygous for gene that has decreased TPMT activity
  • Decreased 6MP dose given
19
Q

Tamoxifen

A

Inhibits tumour growth and promotes apoptosis in ER positive tumours, resulting in reduced risk of recurrence and death from breast cancer

20
Q

Drug safety (Adverse Drug Reactions)

A

ADRs can be divided into type A and B reactions (both affected by genetic factors)

21
Q

Type A ADRs

A
  • An augmentation of the pharmacological actions of a drug and show typical dose dependency, with a reduction in dose leading to improvement
  • E.g. 6-MP and Tamoxifen
22
Q

Type B ADRs

A
  • No clear dose dependency and drug discontinuation stops the ADR
  • Many of these ADRs are immune mediated
  • HLA alleles predispose to these reactions
23
Q

Pharmacogenomics in clinical practice

A
  • Implementation into clinical practice has been slow and restricted to certain specialist centres
  • Due to lack of evidence, inability to access genotyping tests, lack of knowledge
24
Q

Example of why lack of diversity is a problem in pharmacogenomics

A

Most warfarin dosing algorithms have been based on CYP2C92 and CYP2C93 SNPs, which are prevalent in European populations but largely absent in African-ancestry populations.