18. Classification, Biodiversity & Conservation Flashcards
Define Species
A group of organisms with similar morphological and physiological features that able to breed together and produce fertile offspring
What is the Morphological species concept?
they are a group organisms that share physical features that distinguish them from other species
What does Morphological mean?
physical features
What is the Ecological species concept?
When there is a population of similar organisms living in the same area at the same time, they can be described as ecological species
Which system is used to name species?
the Binomial system
first part of name is - genus that the species belongs to - group of very similar organism
second part of name is specific and unique to a single group of organisms that are identified as species
The binomial name is always italicized in writing
For example: (names supposed to be written in italics)
- The most commonly known yeast is Saccharomyces cerevisiae
- It is common to abbreviate the genus name: S. cerevisiae
- Saccharomyces paradoxus is another species of that is a member of the same genus as cerevisiae
What are the 3 domains ?
BAE
Bacteria
Archaea
Eukarya
What is taxonomy ?
- is the practice of biological classification
- involves placing organisms into a series of categories/taxa
- by grouping - easier to understand/remember
- several different ranks within hierarchical classification system
What is the highest rank in the classification system
Domain
What has a major role in the classification of organisms into the 3 domains?
Cell type
- Prokaryotic cells are easily distinguishable in that they lack a nucleus
- Eukaryotic cells have compartmentalised structures, with at least their genetic material segregated from the rest of the cells in a nucleus
Based upon molecular analysis of RNA genes in particular, scientists have realised that using cell type to classify organisms is insufficient as… ?
Prokaryotes could be divided into 2 separate groups (domains)
What are the 3 domains - labelled with Prokaryote / Eukaryote
Bacteria (prokaryotes)
Archaea (prokaryotes)
Eukarya (eukaryotes)
Archaea
- referred to as extremophile prokaryotes
- 1st discovered living in extreme environments - not all archaea do
- have no nucleus - SO PROKARYOTIC
unique properties of Archaea for them being separated from being classified as bacteria
- unique lipids being found in membrane of their cells
- no peptidoglycan in cell walls
- ribosomal structure - more similar to eukaryotic ribosome than bacteria
- similar size range to bacteria
- DNA transcription more similar to that of eukaryotes
EG: Halobacterium salinarum are a species of the archaea domain that can be found in environments with high salt concentrations like the Dead Sea
Bacteria
- have prokaryotic cells - contain no nucleus
- vary in size over wide range
- divide by binary fission
- EG: Staphylococcus pneumoniae is a bacteria species that causes pneumonia
Eukarya
- have nuclei and membrane-bound organelles
- vary massively in size from single-celled organisms
- divide by mitosis
- reproduce sexually/asexually
- EG: Canis lupus also known as wolves
What are the main differences between Archaea and Bacteria?
- Membrane lipids:
The membrane lipids of Archaea consist of branched hydrocarbon chains bonded to glycerol by ether linkages
The membrane lipids of Bacteria consist of unbranched hydrocarbon chains bonded to glycerol by ester linkages
- Ribsomal RNA:
Both have 70s ribosomes
Archaea has smaller 70s subunit - more similar to subunit in Eukaryotic ribosomes than Bacteria
base sequence of rRNA in Archaea more similar to rRNA of Eukarya than bacteria
primary structure of ribosome proteins in Archaea show more similarity to ribosome proteins in Eukarya than bacteria
- Cell wall composition
CELL WALL ALWAYS PRESENT FOR BOTH
Bacteria - cell wall peptidoglycan
Archaea- do not contain peptidoglycan
Order of the hierarchical classification system
Kings Play Chess On Fancy Gold Squares
Kingdom Phylum Class Order Family Genus Species
EG
A wolf belongs to the following taxonomic groups:
Domain: Eukarya
Kingdom: Animalia
Phylum: Chordata
Class: Mammalia
Order: Carnivora
Family: Canidae
Genus: Canis
Species: lupus
The domain Eukarya can be divided into what 4 kingdoms ?
FAPP
Fungi
Animalia
Plantae
Protoctista
- organisms from each of 4 kingdoms have distinct characteristics and features - have cells with membrane-bound nuclei separating genetic material from the cytoplasm, and compartmentalisation within their cells as a result of the presence of other organelles
Kingdom Protoctista
Eukaryotic
- can exists as single-celled organims or as a group of similar cells
what is a group of protoctista known as?
protozoa possess cells similar to animal cells
- cells have no cell wall
what is the name of another group of Protoctista known as?
Algae
- possess cells similar to plant
- cells have cellulose cell walls and chloroplast
Stentor roseli is a protoctist that has flagella all over its body which help it feed and move
Kingdom Fungi
All Eukaryotic
- non-cellulose cell walls - made of polysaccharides chitin and glucans
- no cilia
- are heterotrophs - use organic compounds made by other organisms as their source of energy and molecules for metabolism
- they obtain this energy and carbon by digesting dead/decaying matter extracellularly or from being parasites on living organisms
- reproduce using spores that disperse onto ground nearby
- have a simple body form:
- can be unicellular
- some consist of long threads-hyphae that grow from main fungus body
- larger fungi possess fruiting bodies that release large numbers of spores
- mould on bread - fungus
Kingdom Plantae
- multicellular eukaryotic organisms
- all have cell walls - cellulose
- large usually permanent vacuoles - provide structural support
- able to differentiate into specialised cells to form tissues and organs
- possess chloroplast - enable photosynthesis
- sometimes flagella
- are autotrophs - can synthesize their organic compounds and molecules for energy use and building biomass from inorganic compounds
- have complex body forms - have branching systems above and below the ground.
Bristlecone pines are found in the USA, it is estimated that some of them could be 3000 years old
Kingdom Animalia
- multicellular eukaryotic organisms
- able to differentiate into many different specialised cell types that can form tissues and organs
- have small temporary vacuoles eg lysosome
- no cell wall
- sometimes cilia
- are heterotrophs - have a wide range of feeding mechanisms
- have a wide range of body forms - communication with their complex body forms takes place through nervous system and chemical signalling.
Blue whales are the largest living animal species
Viruses
- microorganisms only seen using e microscope
- no cellular structure - acellular + no metabolism
- hijack DNA replication machinery in host cells
- energy for replication provided by respiration in host cell
Why do viruses sit outside of the three-domain classification system?
they possess none of the characteristics features used for classifying organisms.
how are viruses classified?
it’s classified according to the type of nucleic acid (RNA/DNA) their genome is made from - where it is single-stranded or double-stranded
in cellular organisms eg animals and plants which one is single stranded and which one is double stranded DNA or RNA ?
DNA- ALWAYS double-stranded
RNA- USUALLY ALWAYS single-stranded
However in viruses DNA and RNA can either be …?
- single-stranded or double-stranded
As a result 4 groups of viruses exist:
- DNA single-stranded viruses
- DNA double-stranded viruses
- RNA single-stranded viruses (this is the type of genome of SARS-CoV-2, the virus responsible for the COVID-19 pandemic)
- RNA double-stranded viruses
Define ecosystem
an ecosystem is a relatively self-contained, interacting community of organisms, and the environment in which they live with which they interact
- There are both living (biotic) components and non-living (abiotic)components within an ecosystem
- Ecosystems vary greatly in size and scale
Both a small pond in a back garden and the open ocean could be described as ecosystems
A human being could also be described as an ecosystem; there are thousands of species of bacteria living on and in every person
Ecosystems vary in complexity:
A desert is a relatively simple ecosystem
A tropical rainforest is a very complex ecosystem
No ecosystem is completely self-contained as organisms from one ecosystem are often linked to organisms from another
For example, birds are able to fly long distances to feed from multiple ecosystem
Define habitat
a habitat describes the place where a
species lives within an ecosystem
Define niche
a niche is the role of an organism in an
ecosystem
It encompasses where in the environment the organism is, how it gets its energy and how it interacts with other species and its physical environment
This is how an organism fits into the ecosystem
Define biodiversity
A study of all the variation that exists within and between all forms of live
- looks at the range and variety of genes, species and habitats within a particular region.
Biodiversity can be assessed at 3 different levels
- The number and range of different ecosystems and habitats
- The number of species and their relative abundance
- The genetic variation within each species
Why is Biodiversity important?
for the resilience of ecosystem, in that it allows them to resist changes in the environment.
Ecosystem/habitat diversity
- is the range of different ecosystems/habitats within a particular area/region
-if there is a large number of different habitats within the area it has high biodiversity
EG: coral reef. They are very complex with lots of microhabitats and niches to be exploited
- if only 1/2 different habitats then area has low biodiversity
EG: Large sandy deserts typically have very low biodiversity as the conditions are basically the same throughout the whole area
Species Diversity
- looks at the number of different species in an ecosystem + also the evenness of abundance across the different species present
- the greater the number of species in an ecosystem, and the more evenly distributed the number of organisms are amongst each species, then the greater the species diversity
EG: an ecosystem can have a large number of different species but for some species, there may only be 3 or 4 individuals. As a result, this ecosystem does not necessarily have high species diversity. - Ecosystems with high species diversity are usually more stable than those with lower species diversity as they are more resilient to environmental changes.
EG: in the Pine forests of Florida, the ecosystem is dominated by one or two tree species. If a pathogen comes along that targets one of the two dominant species of trees, then the whole population could be wiped out and the ecosystem it is a part of could collapse
Define species richness
the number of species within an ecosystem
An ecosystem - tropical rainforests has very high number of different species so species rich
Define genetic diversity
- the diversity of alleles and genes in the genome of species
- species not necessarily have same alleles for each gene
- measured by working out the proportion of genes that have more than one form (allele) and how many possible alleles each gene has
- there can be genetic differences/diversity between populations of the same species - this may be due to 2 populations occupying slightly different ranges in their habitat and so are subject to slightly different selection pressures that affect the allele frequencies in their populations
genetic diversity within a single population has also been observed
- this diversity in a species is important as it can help the population adapt to, and survive, changes in the environment
- changes could be in biotic factors - new predators, pathogens and competition with other species
- or abiotic factors - temp, humidity and rainfall
define sampling
method of investigated the abundance and distribution of species and populations
what are the 2 types of sampling
Random and Systematic
random sampling
- the positions of the sampling points are completely random or due to chance
- This method is beneficial because it means there will be no bias by the person that is carrying out the sampling that may affect the results
systematic sampling
- the positions of the sampling points are chosen by the person carrying out the sampling
- There is a possibility that the person choosing could show bias towards or against certain areas
- Individuals may deliberately place the quadrats in areas with the least species as these will be easier and quicker to count
- This is unrepresentative of the whole area